assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708775.1_ASM970877v1	NZ_CP038937	Piscirickettsia salmonis strain Psal-026 chromosome, complete genome	1	363106-363235	1	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	56	363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189	NZ_CP038938.1_59302-59265|NZ_CP038938.1_94958-94995|NZ_CP038937.1_155095-155058|NZ_CP038937.1_256591-256554|NZ_CP038937.1_966283-966246|NZ_CP038937.1_1055830-1055793|NZ_CP038937.1_1064700-1064663|NZ_CP038937.1_1096579-1096542|NZ_CP038937.1_1178469-1178432|NZ_CP038937.1_1187770-1187733|NZ_CP038937.1_1486751-1486714|NZ_CP038937.1_1486885-1486848|NZ_CP038937.1_1757717-1757680|NZ_CP038937.1_2289730-2289693|NZ_CP038937.1_2393302-2393265|NZ_CP038937.1_2430080-2430043|NZ_CP038937.1_2621551-2621514|NZ_CP038937.1_2741062-2741025|NZ_CP038937.1_46479-46516|NZ_CP038937.1_157365-157402|NZ_CP038937.1_178807-178844|NZ_CP038937.1_183189-183226|NZ_CP038937.1_225981-226018|NZ_CP038937.1_461899-461936|NZ_CP038937.1_607723-607760|NZ_CP038937.1_969496-969533|NZ_CP038937.1_1257190-1257227|NZ_CP038937.1_1367748-1367785|NZ_CP038937.1_1525320-1525357|NZ_CP038937.1_1570142-1570179|NZ_CP038937.1_1602205-1602242|NZ_CP038937.1_1616569-1616606|NZ_CP038937.1_1707132-1707169|NZ_CP038937.1_1712707-1712744|NZ_CP038937.1_2026922-2026959|NZ_CP038937.1_2030428-2030465|NZ_CP038937.1_2064756-2064793|NZ_CP038937.1_2088904-2088941|NZ_CP038937.1_2202478-2202515|NZ_CP038937.1_2260968-2261005|NZ_CP038937.1_2294026-2294063|NZ_CP038937.1_2320623-2320660|NZ_CP038937.1_2321740-2321777|NZ_CP038937.1_2376651-2376688|NZ_CP038937.1_2420277-2420314|NZ_CP038937.1_2518173-2518210|NZ_CP038937.1_2520325-2520362|NZ_CP038937.1_2575983-2576020|NZ_CP038937.1_2802552-2802589|NZ_CP038937.1_2806378-2806415|NZ_CP038937.1_3008689-3008726|NZ_CP038937.1_1064566-1064529|NZ_CP038937.1_2212657-2212620|NZ_CP038937.1_352899-352936|NZ_CP038937.1_2202612-2202649|NZ_CP038939.1_5737-5774	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|73aa|up_9|NZ_CP038937.1_353608_353827_-,NA|65aa|up_5|NZ_CP038937.1_357808_358003_-,NA|141aa|up_3|NZ_CP038937.1_359325_359748_+,NA|105aa|up_0|NZ_CP038937.1_361884_362199_-,NA|97aa|down_0|NZ_CP038937.1_363764_364055_+,NA|233aa|down_1|NZ_CP038937.1_364092_364791_+,NA|99aa|down_2|NZ_CP038937.1_364807_365104_+,NA|382aa|down_3|NZ_CP038937.1_365227_366373_+,NA|192aa|down_4|NZ_CP038937.1_366645_367221_+	NA|73aa|up_9|NZ_CP038937.1_353608_353827_-	NA	NA|325aa|up_8|NZ_CP038937.1_354194_355169_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|85aa|up_7|NZ_CP038937.1_355707_355962_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP038937.1_356684_357671_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP038937.1_357808_358003_-	NA	NA|216aa|up_4|NZ_CP038937.1_358685_359333_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|141aa|up_3|NZ_CP038937.1_359325_359748_+	NA	NA|468aa|up_2|NZ_CP038937.1_359909_361313_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038937.1_361363_361939_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038937.1_361884_362199_-	NA	NA|97aa|down_0|NZ_CP038937.1_363764_364055_+	NA	NA|233aa|down_1|NZ_CP038937.1_364092_364791_+	NA	NA|99aa|down_2|NZ_CP038937.1_364807_365104_+	NA	NA|382aa|down_3|NZ_CP038937.1_365227_366373_+	NA	NA|192aa|down_4|NZ_CP038937.1_366645_367221_+	NA	NA|278aa|down_5|NZ_CP038937.1_367278_368112_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_6|NZ_CP038937.1_368227_369412_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_7|NZ_CP038937.1_369430_370375_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_8|NZ_CP038937.1_370679_371465_+	TIGR03545, TIGR03545, TIGR03545 family protein	NA|123aa|down_9|NZ_CP038937.1_371582_371951_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]
GCF_009708775.1_ASM970877v1	NZ_CP038937	Piscirickettsia salmonis strain Psal-026 chromosome, complete genome	2	689312-689432	2	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	AGCTTATCAATGGTTAGTAGCCCTTGGACTTAATCAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|61aa|up_1|NZ_CP038937.1_686352_686535_+,NA|141aa|down_0|NZ_CP038937.1_689588_690011_+,NA|137aa|down_1|NZ_CP038937.1_690254_690665_-,NA|88aa|down_2|NZ_CP038937.1_690933_691197_-,NA|172aa|down_3|NZ_CP038937.1_691429_691945_-,NA|158aa|down_7|NZ_CP038937.1_697332_697806_+	NA|340aa|up_9|NZ_CP038937.1_677833_678853_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|204aa|up_8|NZ_CP038937.1_678899_679511_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|229aa|up_7|NZ_CP038937.1_679514_680201_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|181aa|up_6|NZ_CP038937.1_680197_680740_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|396aa|up_5|NZ_CP038937.1_682552_683740_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|242aa|up_4|NZ_CP038937.1_683985_684711_+	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|265aa|up_3|NZ_CP038937.1_684889_685684_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|132aa|up_2|NZ_CP038937.1_685680_686076_-	pfam17775, UPF0225, UPF0225 domain	NA|61aa|up_1|NZ_CP038937.1_686352_686535_+	NA	NA|155aa|up_0|NZ_CP038937.1_687469_687934_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|141aa|down_0|NZ_CP038937.1_689588_690011_+	NA	NA|137aa|down_1|NZ_CP038937.1_690254_690665_-	NA	NA|88aa|down_2|NZ_CP038937.1_690933_691197_-	NA	NA|172aa|down_3|NZ_CP038937.1_691429_691945_-	NA	NA|337aa|down_4|NZ_CP038937.1_692089_693100_-	cd00180, PKc, Catalytic domain of Protein Kinases	NA|694aa|down_5|NZ_CP038937.1_693403_695485_-	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|420aa|down_6|NZ_CP038937.1_695940_697200_-	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|158aa|down_7|NZ_CP038937.1_697332_697806_+	NA	NA|461aa|down_8|NZ_CP038937.1_697814_699197_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|205aa|down_9|NZ_CP038937.1_699189_699804_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated
GCF_009708775.1_ASM970877v1	NZ_CP038937	Piscirickettsia salmonis strain Psal-026 chromosome, complete genome	3	1621590-1621696	3	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|154aa|up_9|NZ_CP038937.1_1610659_1611121_+,NA|62aa|up_7|NZ_CP038937.1_1614054_1614240_+,NA|105aa|up_2|NZ_CP038937.1_1618687_1619002_-,NA|87aa|up_1|NZ_CP038937.1_1619258_1619519_+,NA|86aa|down_0|NZ_CP038937.1_1622400_1622658_+,NA|204aa|down_4|NZ_CP038937.1_1626660_1627272_+,NA|87aa|down_5|NZ_CP038937.1_1627456_1627717_+,NA|67aa|down_7|NZ_CP038937.1_1629558_1629759_-	NA|154aa|up_9|NZ_CP038937.1_1610659_1611121_+	NA	NA|652aa|up_8|NZ_CP038937.1_1611419_1613375_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_7|NZ_CP038937.1_1614054_1614240_+	NA	NA|330aa|up_6|NZ_CP038937.1_1614573_1615563_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|192aa|up_5|NZ_CP038937.1_1615656_1616232_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|up_4|NZ_CP038937.1_1616177_1616543_-	pfam13384, HTH_23, Homeodomain-like domain	NA|541aa|up_3|NZ_CP038937.1_1616974_1618597_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|105aa|up_2|NZ_CP038937.1_1618687_1619002_-	NA	NA|87aa|up_1|NZ_CP038937.1_1619258_1619519_+	NA	NA|163aa|up_0|NZ_CP038937.1_1619538_1620027_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP038937.1_1622400_1622658_+	NA	NA|313aa|down_1|NZ_CP038937.1_1622727_1623666_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP038937.1_1623691_1625257_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP038937.1_1625466_1626294_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP038937.1_1626660_1627272_+	NA	NA|87aa|down_5|NZ_CP038937.1_1627456_1627717_+	NA	NA|318aa|down_6|NZ_CP038937.1_1628178_1629132_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP038937.1_1629558_1629759_-	NA	NA|269aa|down_8|NZ_CP038937.1_1630133_1630940_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP038937.1_1631045_1632017_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708775.1_ASM970877v1	NZ_CP038938	Piscirickettsia salmonis strain Psal-026 plasmid unnamed1, complete sequence	1	1232-1455	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,RT,DinG,cas3	NA,NA|563aa|down_2|NZ_CP038938.1_3589_5278_-,NA|160aa|down_4|NZ_CP038938.1_6830_7310_+,NA|67aa|down_7|NZ_CP038938.1_9356_9557_+,NA|327aa|down_8|NZ_CP038938.1_10013_10994_+,NA|60aa|down_9|NZ_CP038938.1_12170_12350_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|340aa|up_0|NZ_CP038938.1_0_1020_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|56aa|down_0|NZ_CP038938.1_2669_2837_-	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|243aa|down_1|NZ_CP038938.1_2892_3621_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|563aa|down_2|NZ_CP038938.1_3589_5278_-	NA	NA|325aa|down_3|NZ_CP038938.1_5621_6596_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|160aa|down_4|NZ_CP038938.1_6830_7310_+	NA	NA|327aa|down_5|NZ_CP038938.1_7539_8520_-	pfam04986, Y2_Tnp, Putative transposase	NA|105aa|down_6|NZ_CP038938.1_8429_8744_-	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|67aa|down_7|NZ_CP038938.1_9356_9557_+	NA	NA|327aa|down_8|NZ_CP038938.1_10013_10994_+	NA	NA|60aa|down_9|NZ_CP038938.1_12170_12350_+	NA
