assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009697285.1_ASM969728v1	NZ_CP046077	Enterococcus faecium strain VRE chromosome, complete genome	1	1850638-1850754	1	CRISPRCasFinder	no		cas14j,cas3,RT,DEDDh,cas2,DinG,csa3	Orphan	GTCAGAATGAACCTCATTCTGGCTCAGATTTTTTG	35	1	19	1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719|1850673-1850719	NZ_CP046077.1_1047534-1047580|NZ_CP046077.1_1157851-1157897|NZ_CP046077.1_1328363-1328409|NZ_CP046077.1_1390516-1390562|NZ_CP046077.1_2134572-2134618|NZ_CP046077.1_85559-85513|NZ_CP046077.1_159553-159507|NZ_CP046077.1_208165-208119|NZ_CP046077.1_930800-930754|NZ_CP046077.1_1558676-1558630|NZ_CP046077.1_1595515-1595469|NZ_CP046077.1_1672513-1672467|NZ_CP046077.1_1706762-1706716|NZ_CP046077.1_1972540-1972494|NZ_CP046077.1_2087450-2087404|NZ_CP046077.1_2139098-2139052|NZ_CP046077.1_2273183-2273137|NZ_CP046077.1_2587727-2587681|NZ_CP046076.1_45313-45267	NA	1	1	Orphan	cas14j,cas3,RT,DEDDh,cas2,DinG,csa3	NA,NA|101aa|down_6|NZ_CP046077.1_1859285_1859588_+,NA|105aa|down_9|NZ_CP046077.1_1863588_1863903_-	NA|320aa|up_9|NZ_CP046077.1_1837120_1838080_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|488aa|up_8|NZ_CP046077.1_1839116_1840580_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|129aa|up_7|NZ_CP046077.1_1840803_1841190_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|449aa|up_6|NZ_CP046077.1_1841497_1842844_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|450aa|up_5|NZ_CP046077.1_1842955_1844305_-	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|418aa|up_4|NZ_CP046077.1_1844421_1845675_+	pfam03486, HI0933_like, HI0933-like protein	NA|162aa|up_3|NZ_CP046077.1_1845745_1846231_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|253aa|up_2|NZ_CP046077.1_1846253_1847012_-	PRK02412, aroD, type I 3-dehydroquinate dehydratase	NA|393aa|up_1|NZ_CP046077.1_1847027_1848206_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|707aa|up_0|NZ_CP046077.1_1848435_1850556_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|432aa|down_0|NZ_CP046077.1_1852194_1853490_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|170aa|down_1|NZ_CP046077.1_1854536_1855046_+	cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter	NA|483aa|down_2|NZ_CP046077.1_1855116_1856565_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|239aa|down_3|NZ_CP046077.1_1856564_1857281_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|117aa|down_4|NZ_CP046077.1_1857261_1857612_-	pfam13630, SdpI, SdpI/YfhL protein family	NA|258aa|down_5|NZ_CP046077.1_1857755_1858529_+	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|101aa|down_6|NZ_CP046077.1_1859285_1859588_+	NA	NA|432aa|down_7|NZ_CP046077.1_1859778_1861074_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|393aa|down_8|NZ_CP046077.1_1861302_1862481_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|105aa|down_9|NZ_CP046077.1_1863588_1863903_-	NA
GCF_009697285.1_ASM969728v1	NZ_CP046077	Enterococcus faecium strain VRE chromosome, complete genome	2	2508510-2508619	2	CRISPRCasFinder	no		cas14j,cas3,RT,DEDDh,cas2,DinG,csa3	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas3,RT,DEDDh,cas2,DinG,csa3	NA,NA	NA|720aa|up_9|NZ_CP046077.1_2496049_2498209_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP046077.1_2498258_2499224_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP046077.1_2499312_2500452_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP046077.1_2500760_2501474_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP046077.1_2501727_2502429_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP046077.1_2502662_2504195_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|303aa|up_3|NZ_CP046077.1_2504584_2505493_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|230aa|up_2|NZ_CP046077.1_2506717_2507407_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP046077.1_2507512_2507881_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP046077.1_2507933_2508437_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP046077.1_2508846_2509536_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP046077.1_2509639_2510062_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP046077.1_2510404_2511073_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP046077.1_2511085_2511958_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP046077.1_2512048_2513068_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP046077.1_2513240_2514128_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP046077.1_2514204_2514750_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP046077.1_2514850_2515021_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP046077.1_2515044_2515197_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP046077.1_2515358_2516003_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_009697285.1_ASM969728v1	NZ_CP046076	Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence	1	430-557	1	CRISPRCasFinder	no		RT	Orphan	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	Orphan	cas14j,cas3,RT,DEDDh,cas2,DinG,csa3	NA,NA|111aa|down_0|NZ_CP046076.1_1864_2197_+,NA|80aa|down_3|NZ_CP046076.1_5053_5293_+,NA|70aa|down_4|NZ_CP046076.1_5359_5569_+,NA|254aa|down_8|NZ_CP046076.1_9111_9873_+,NA|87aa|down_9|NZ_CP046076.1_9885_10146_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP046076.1_1864_2197_+	NA	NA|114aa|down_1|NZ_CP046076.1_2815_3157_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NZ_CP046076.1_3393_4644_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|80aa|down_3|NZ_CP046076.1_5053_5293_+	NA	NA|70aa|down_4|NZ_CP046076.1_5359_5569_+	NA	NA|224aa|down_5|NZ_CP046076.1_5628_6300_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|659aa|down_6|NZ_CP046076.1_6352_8329_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|251aa|down_7|NZ_CP046076.1_8343_9096_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|254aa|down_8|NZ_CP046076.1_9111_9873_+	NA	NA|87aa|down_9|NZ_CP046076.1_9885_10146_+	NA
GCF_009697285.1_ASM969728v1	NZ_CP046076	Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence	2	78649-78759	2	CRISPRCasFinder	no		RT	Orphan	GGCTCTTTGTCAATAAGGACTGATGGGTTGT	31	1	11	78680-78728|78680-78728|78680-78728|78680-78728|78680-78728|78680-78728|78680-78728|78680-78728|78680-78728|78680-78728|78680-78728	NZ_CP046077.1_316715-316763|NZ_CP046077.1_714194-714242|NZ_CP046077.1_1061821-1061869|NZ_CP046077.1_1230386-1230434|NZ_CP046077.1_1376288-1376336|NZ_CP046077.1_1850622-1850670|NZ_CP046077.1_659672-659624|NZ_CP046077.1_1959128-1959080|NZ_CP046077.1_1979814-1979766|NZ_CP046077.1_2735196-2735148|NZ_CP046077.1_2804369-2804321	NA	1	1	Orphan	cas14j,cas3,RT,DEDDh,cas2,DinG,csa3	NA,NA	NA|459aa|up_9|NZ_CP046076.1_67097_68474_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|400aa|up_8|NZ_CP046076.1_68603_69803_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|50aa|up_7|NZ_CP046076.1_71746_71896_+	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	NA|430aa|up_6|NZ_CP046076.1_72617_73907_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|294aa|up_5|NZ_CP046076.1_73982_74864_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|272aa|up_4|NZ_CP046076.1_74853_75669_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|375aa|up_3|NZ_CP046076.1_75684_76809_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|268aa|up_2|NZ_CP046076.1_76786_77590_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|91aa|up_1|NZ_CP046076.1_78040_78313_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|112aa|up_0|NZ_CP046076.1_78296_78632_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|425aa|down_0|NZ_CP046076.1_80225_81500_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|243aa|down_1|NZ_CP046076.1_81882_82611_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|525aa|down_2|NZ_CP046076.1_82588_84163_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|313aa|down_3|NZ_CP046076.1_84391_85330_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|304aa|down_4|NZ_CP046076.1_85341_86253_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|491aa|down_5|NZ_CP046076.1_86276_87749_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|204aa|down_6|NZ_CP046076.1_87799_88411_+	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|638aa|down_7|NZ_CP046076.1_88440_90354_+	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|994aa|down_8|NZ_CP046076.1_90481_93463_+	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|554aa|down_9|NZ_CP046076.1_93459_95121_+	pfam07555, NAGidase, beta-N-acetylglucosaminidase
