assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009685195.1_ASM968519v1	NZ_CP044331	Methylocystis parvus strain BRCS2 chromosome, complete genome	1	686734-686832	1	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	Unclear	GCGCTGTCGCTTCTCGGCGCCGCGCTC	27	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|70aa|up_7|NZ_CP044331.1_675640_675850_-,NA|159aa|up_1|NZ_CP044331.1_684269_684746_+,NA|111aa|down_2|NZ_CP044331.1_690390_690723_-,NA|228aa|down_6|NZ_CP044331.1_694262_694946_-,NA|145aa|down_7|NZ_CP044331.1_695180_695615_+,NA|162aa|down_9|NZ_CP044331.1_696427_696913_-	NA|323aa|up_9|NZ_CP044331.1_673838_674807_+	COG1907, COG1907, Predicted archaeal sugar kinases [General function prediction only]	NA|291aa|up_8|NZ_CP044331.1_674790_675663_+	cd05350, SDR_c6, classical (c) SDR, subgroup 6	NA|70aa|up_7|NZ_CP044331.1_675640_675850_-	NA	NA|759aa|up_6|NZ_CP044331.1_675903_678180_-	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|225aa|up_5|NZ_CP044331.1_678227_678902_-	TIGR04123, hypothetical_protein, metallophosphoesterase, DNA ligase-associated	cas3|822aa|up_4|NZ_CP044331.1_678898_681364_-	TIGR04121, ATP-dependent_helicase, DEXH box helicase, DNA ligase-associated	NA|575aa|up_3|NZ_CP044331.1_681356_683081_-	PRK09247, PRK09247, ATP-dependent DNA ligase; Validated	NA|340aa|up_2|NZ_CP044331.1_683077_684097_-	TIGR04122, hypothetical_protein, putative exonuclease, DNA ligase-associated	NA|159aa|up_1|NZ_CP044331.1_684269_684746_+	NA	NA|247aa|up_0|NZ_CP044331.1_684820_685561_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|346aa|down_0|NZ_CP044331.1_688012_689050_+	COG5621, COG5621, Predicted secreted hydrolase [General function prediction only]	NA|432aa|down_1|NZ_CP044331.1_689104_690400_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|111aa|down_2|NZ_CP044331.1_690390_690723_-	NA	NA|336aa|down_3|NZ_CP044331.1_690680_691688_-	TIGR03466, HpnA, hopanoid-associated sugar epimerase	NA|252aa|down_4|NZ_CP044331.1_691868_692624_-	pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase	NA|359aa|down_5|NZ_CP044331.1_692823_693900_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|228aa|down_6|NZ_CP044331.1_694262_694946_-	NA	NA|145aa|down_7|NZ_CP044331.1_695180_695615_+	NA	NA|249aa|down_8|NZ_CP044331.1_695675_696422_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|162aa|down_9|NZ_CP044331.1_696427_696913_-	NA
GCF_009685195.1_ASM968519v1	NZ_CP044331	Methylocystis parvus strain BRCS2 chromosome, complete genome	2	1677017-1677108	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	ACGGGCGAATCCGCGCCTGTCGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|74aa|up_7|NZ_CP044331.1_1664199_1664421_+,NA|54aa|up_0|NZ_CP044331.1_1675691_1675853_+,NA|132aa|down_1|NZ_CP044331.1_1678932_1679328_-,NA|123aa|down_4|NZ_CP044331.1_1681959_1682328_+,NA|70aa|down_8|NZ_CP044331.1_1685968_1686178_-	NA|1043aa|up_9|NZ_CP044331.1_1659600_1662729_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|419aa|up_8|NZ_CP044331.1_1662725_1663982_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|74aa|up_7|NZ_CP044331.1_1664199_1664421_+	NA	NA|1063aa|up_6|NZ_CP044331.1_1664577_1667766_-	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional	NA|170aa|up_5|NZ_CP044331.1_1667890_1668400_-	pfam08714, Fae, Formaldehyde-activating enzyme (Fae)	NA|340aa|up_4|NZ_CP044331.1_1668752_1669772_-	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|596aa|up_3|NZ_CP044331.1_1669852_1671640_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|344aa|up_2|NZ_CP044331.1_1671676_1672708_-	cd01005, PBP2_CysP, Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|888aa|up_1|NZ_CP044331.1_1672806_1675470_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|54aa|up_0|NZ_CP044331.1_1675691_1675853_+	NA	NA|92aa|down_0|NZ_CP044331.1_1678630_1678906_+	PHA03102, PHA03102, Small T antigen; Reviewed	NA|132aa|down_1|NZ_CP044331.1_1678932_1679328_-	NA	NA|322aa|down_2|NZ_CP044331.1_1679329_1680295_-	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|505aa|down_3|NZ_CP044331.1_1680382_1681897_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|123aa|down_4|NZ_CP044331.1_1681959_1682328_+	NA	NA|212aa|down_5|NZ_CP044331.1_1682435_1683071_+	pfam12787, EcsC, EcsC protein family	NA|436aa|down_6|NZ_CP044331.1_1683093_1684401_+	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like	NA|405aa|down_7|NZ_CP044331.1_1684459_1685674_-	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|70aa|down_8|NZ_CP044331.1_1685968_1686178_-	NA	NA|183aa|down_9|NZ_CP044331.1_1686164_1686713_-	COG1522, Lrp, Transcriptional regulators [Transcription]
GCF_009685195.1_ASM968519v1	NZ_CP044331	Methylocystis parvus strain BRCS2 chromosome, complete genome	3	1713721-1717283	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	GTTTCGATCCACGCGCCCGCGAAGGGCACGAC,GTTTCGATCCACGCGCCCGCGAAGGGCACGAC,GTTTCGATCCACGCGCCCGCGAAGGGCACGAC	32,32,32	0	0	NA	NA	NA:NA:NA	53,53,53	53	Orphan	csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|106aa|up_4|NZ_CP044331.1_1709103_1709421_-,NA|79aa|down_8|NZ_CP044331.1_1727965_1728202_+,NA|120aa|down_9|NZ_CP044331.1_1728536_1728896_-	NA|433aa|up_9|NZ_CP044331.1_1703583_1704882_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|321aa|up_8|NZ_CP044331.1_1704878_1705841_+	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional	NA|321aa|up_7|NZ_CP044331.1_1705849_1706812_+	PRK13356, PRK13356, branched-chain amino acid aminotransferase	NA|460aa|up_6|NZ_CP044331.1_1706856_1708236_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|242aa|up_5|NZ_CP044331.1_1708228_1708954_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|106aa|up_4|NZ_CP044331.1_1709103_1709421_-	NA	NA|587aa|up_3|NZ_CP044331.1_1709681_1711442_-	cd16035, sulfatase_like, uncharacterized sulfatase subfamily	NA|98aa|up_2|NZ_CP044331.1_1711502_1711796_-	pfam06411, HdeA, HdeA/HdeB family	NA|99aa|up_1|NZ_CP044331.1_1711817_1712114_-	pfam06411, HdeA, HdeA/HdeB family	NA|370aa|up_0|NZ_CP044331.1_1712318_1713428_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|283aa|down_0|NZ_CP044331.1_1717530_1718379_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|107aa|down_1|NZ_CP044331.1_1718655_1718976_-	smart00938, P-II, Nitrogen regulatory protein P-II	NA|242aa|down_2|NZ_CP044331.1_1718981_1719707_-	pfam07556, DUF1538, Protein of unknown function (DUF1538)	NA|232aa|down_3|NZ_CP044331.1_1719703_1720399_-	pfam07556, DUF1538, Protein of unknown function (DUF1538)	NA|428aa|down_4|NZ_CP044331.1_1722234_1723518_+	pfam13433, Peripla_BP_5, Periplasmic binding protein domain	NA|124aa|down_5|NZ_CP044331.1_1724821_1725193_+	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain	NA|292aa|down_6|NZ_CP044331.1_1725531_1726407_-	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]	NA|136aa|down_7|NZ_CP044331.1_1727431_1727839_+	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain	NA|79aa|down_8|NZ_CP044331.1_1727965_1728202_+	NA	NA|120aa|down_9|NZ_CP044331.1_1728536_1728896_-	NA
GCF_009685195.1_ASM968519v1	NZ_CP044331	Methylocystis parvus strain BRCS2 chromosome, complete genome	4	2480762-2486628	2,2,4,3	CRT,PILER-CR,CRISPRCasFinder,PILER-CR	no	csa3,cas2,cas1,cas4,cas7b,cas8c,cas5,cas3	csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	 or Type I-U?,Type I-U,Type I-A,Type I-C, Type I-C	NNGTTTCGATCCACGCGCCCGTGAAGGCGCGAC,GTTTCGATCCACGCGCCCGTGAA-GGCGCGAC,GTTTCGATCCACGCGCCCGTGAAGGCGCGAC,GTTTCGATCCACGCGCCCGTGAA-GGCGCGAC	33,32,31,32	0	0	NA	NA	NA:NA:NA:NA	89,85,87,85	89	orTypeI-U?,TypeI-U,TypeI-A,TypeI-C,TypeI-C	csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|68aa|up_6|NZ_CP044331.1_2474397_2474601_+,NA|68aa|up_5|NZ_CP044331.1_2474622_2474826_+,NA|72aa|up_4|NZ_CP044331.1_2474862_2475078_+,NA|102aa|up_3|NZ_CP044331.1_2475088_2475394_+,NA	csa3|114aa|up_9|NZ_CP044331.1_2471224_2471566_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|622aa|up_8|NZ_CP044331.1_2471694_2473560_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|134aa|up_7|NZ_CP044331.1_2473964_2474366_+	pfam00477, LEA_5, Small hydrophilic plant seed protein	NA|68aa|up_6|NZ_CP044331.1_2474397_2474601_+	NA	NA|68aa|up_5|NZ_CP044331.1_2474622_2474826_+	NA	NA|72aa|up_4|NZ_CP044331.1_2474862_2475078_+	NA	NA|102aa|up_3|NZ_CP044331.1_2475088_2475394_+	NA	NA|644aa|up_2|NZ_CP044331.1_2475704_2477636_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|369aa|up_1|NZ_CP044331.1_2477771_2478878_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|382aa|up_0|NZ_CP044331.1_2479367_2480513_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	cas2|97aa|down_0|NZ_CP044331.1_2486858_2487149_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_1|NZ_CP044331.1_2487153_2488188_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|214aa|down_2|NZ_CP044331.1_2488191_2488833_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7b|317aa|down_3|NZ_CP044331.1_2488848_2489799_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|596aa|down_4|NZ_CP044331.1_2489798_2491586_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|231aa|down_5|NZ_CP044331.1_2491582_2492275_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|748aa|down_6|NZ_CP044331.1_2492326_2494570_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|344aa|down_7|NZ_CP044331.1_2494766_2495798_-	TIGR03123, one_C_unchar_1, probable H4MPT-linked C1 transfer pathway protein	NA|170aa|down_8|NZ_CP044331.1_2496048_2496558_-	pfam08714, Fae, Formaldehyde-activating enzyme (Fae)	NA|297aa|down_9|NZ_CP044331.1_2496730_2497621_-	pfam09176, Mpt_N, Methylene-tetrahydromethanopterin dehydrogenase, N-terminal
GCF_009685195.1_ASM968519v1	NZ_CP044331	Methylocystis parvus strain BRCS2 chromosome, complete genome	5	3929679-3929779	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	Orphan	GCCGATCCCGACAATGACGGCACGCTGGA	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7b,cas8c,cas5	NA|72aa|up_9|NZ_CP044331.1_3916988_3917204_-,NA|287aa|down_4|NZ_CP044331.1_3934065_3934926_-	NA|72aa|up_9|NZ_CP044331.1_3916988_3917204_-	NA	NA|270aa|up_8|NZ_CP044331.1_3917326_3918136_-	TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit C	NA|303aa|up_7|NZ_CP044331.1_3918132_3919041_-	PRK02114, PRK02114, formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional	NA|545aa|up_6|NZ_CP044331.1_3919028_3920663_-	TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A	NA|371aa|up_5|NZ_CP044331.1_3920656_3921769_-	cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins	NA|26aa|up_4|NZ_CP044331.1_3922164_3922242_+	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA	NA|343aa|up_3|NZ_CP044331.1_3922389_3923418_+	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|207aa|up_2|NZ_CP044331.1_3923497_3924118_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|439aa|up_1|NZ_CP044331.1_3924304_3925621_+	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB	NA|1161aa|up_0|NZ_CP044331.1_3925814_3929297_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|393aa|down_0|NZ_CP044331.1_3929897_3931076_+	TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system	NA|360aa|down_1|NZ_CP044331.1_3931072_3932152_+	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|251aa|down_2|NZ_CP044331.1_3932300_3933053_+	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	NA|289aa|down_3|NZ_CP044331.1_3933110_3933977_+	TIGR03861, ABC_efflux_transporter_permease_protein, alcohol ABC transporter, permease protein	NA|287aa|down_4|NZ_CP044331.1_3934065_3934926_-	NA	NA|176aa|down_5|NZ_CP044331.1_3935038_3935566_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|292aa|down_6|NZ_CP044331.1_3935738_3936614_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|75aa|down_7|NZ_CP044331.1_3936610_3936835_-	pfam09723, Zn-ribbon_8, Zinc ribbon domain	NA|575aa|down_8|NZ_CP044331.1_3936965_3938690_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|487aa|down_9|NZ_CP044331.1_3938715_3940176_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed
