assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	1	124608-124687	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	CAGCTTACAATAAAGTGCAAGTTGG	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA|68aa|down_5|NZ_CP045472.1_133002_133206_+	NA|160aa|up_9|NZ_CP045472.1_116648_117128_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|280aa|up_8|NZ_CP045472.1_117142_117982_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|178aa|up_7|NZ_CP045472.1_118071_118605_+	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|143aa|up_6|NZ_CP045472.1_118597_119026_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|167aa|up_5|NZ_CP045472.1_119037_119538_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|74aa|up_4|NZ_CP045472.1_119537_119759_+	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|497aa|up_3|NZ_CP045472.1_119950_121441_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|170aa|up_2|NZ_CP045472.1_121840_122350_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|357aa|up_1|NZ_CP045472.1_122361_123432_+	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|205aa|up_0|NZ_CP045472.1_123448_124063_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|220aa|down_0|NZ_CP045472.1_125204_125864_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|452aa|down_1|NZ_CP045472.1_125860_127216_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|933aa|down_2|NZ_CP045472.1_127504_130303_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|423aa|down_3|NZ_CP045472.1_130316_131585_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|270aa|down_4|NZ_CP045472.1_132164_132974_+	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|68aa|down_5|NZ_CP045472.1_133002_133206_+	NA	NA|264aa|down_6|NZ_CP045472.1_133386_134178_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|629aa|down_7|NZ_CP045472.1_134191_136078_+	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|448aa|down_8|NZ_CP045472.1_136302_137646_+	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|379aa|down_9|NZ_CP045472.1_137719_138856_-	pfam05816, TelA, Toxic anion resistance protein (TelA)
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	2	332595-332687	2	CRISPRCasFinder	no	cas3	DinG,DEDDh,cas3,WYL,csa3	Unclear	AGTTATCAATTTATTGATTACTGTTTCTTA	30	0	0	NA	NA	NA	1	1	Unclear	DinG,DEDDh,cas3,WYL,csa3	NA,NA	NA|117aa|up_9|NZ_CP045472.1_322247_322598_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP045472.1_322700_323438_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP045472.1_323437_323941_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP045472.1_324128_324404_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP045472.1_324749_326117_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP045472.1_326142_326475_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP045472.1_326461_327712_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP045472.1_327711_331278_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP045472.1_331424_332156_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP045472.1_332271_332505_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP045472.1_332810_333545_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP045472.1_333537_334464_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP045472.1_334456_335443_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP045472.1_335447_336020_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|NZ_CP045472.1_336221_338282_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|NZ_CP045472.1_338471_340118_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|NZ_CP045472.1_340132_340507_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP045472.1_340949_341138_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|NZ_CP045472.1_341519_342161_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|NZ_CP045472.1_342167_342812_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	3	743000-743085	3	CRISPRCasFinder	no	cas3	DinG,DEDDh,cas3,WYL,csa3	Unclear	AGAGAAATTGGATTCCCAATTTCTACA	27	1	3	743027-743058|743027-743058|743027-743058	NZ_CP045472.1_2058768-2058737|NZ_CP045472.1_269945-269976|NZ_CP045472.1_1571747-1571778	NA	1	1	Unclear	DinG,DEDDh,cas3,WYL,csa3	NA,NA	NA|397aa|up_9|NZ_CP045472.1_729955_731146_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_8|NZ_CP045472.1_731284_732295_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_7|NZ_CP045472.1_732347_733361_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_6|NZ_CP045472.1_734251_734881_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_5|NZ_CP045472.1_735583_736486_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|545aa|up_4|NZ_CP045472.1_736819_738454_-	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|196aa|up_3|NZ_CP045472.1_738635_739223_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP045472.1_739792_740737_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP045472.1_740847_741843_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP045472.1_741839_742751_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP045472.1_743400_744336_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP045472.1_744402_745842_-	sd00006, TPR, Tetratricopeptide repeat	NA|162aa|down_2|NZ_CP045472.1_745849_746335_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP045472.1_746342_747182_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP045472.1_747187_748120_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP045472.1_748729_751576_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP045472.1_751583_753569_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP045472.1_753837_754074_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP045472.1_754070_754721_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP045472.1_754894_755734_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	4	789391-789475	4	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	TGTTGGGGCCCACCCCAACTCGCATTG	27	1	1	789418-789448	NZ_CP045472.1_748405-748375	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|52aa|up_8|NZ_CP045472.1_779524_779680_-,NA|34aa|up_1|NZ_CP045472.1_787844_787946_-,NA|69aa|down_8|NZ_CP045472.1_802423_802630_-	NA|324aa|up_9|NZ_CP045472.1_778514_779486_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|52aa|up_8|NZ_CP045472.1_779524_779680_-	NA	NA|324aa|up_7|NZ_CP045472.1_780179_781151_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|up_6|NZ_CP045472.1_781268_783374_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|up_5|NZ_CP045472.1_783336_783735_-	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|289aa|up_4|NZ_CP045472.1_784535_785402_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|up_3|NZ_CP045472.1_785421_785922_+	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|502aa|up_2|NZ_CP045472.1_786261_787767_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|34aa|up_1|NZ_CP045472.1_787844_787946_-	NA	NA|306aa|up_0|NZ_CP045472.1_788038_788956_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|181aa|down_0|NZ_CP045472.1_789563_790106_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|353aa|down_1|NZ_CP045472.1_790264_791323_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|505aa|down_2|NZ_CP045472.1_791562_793077_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|326aa|down_3|NZ_CP045472.1_793069_794047_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|594aa|down_4|NZ_CP045472.1_794268_796050_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|628aa|down_5|NZ_CP045472.1_796061_797945_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|647aa|down_6|NZ_CP045472.1_798215_800156_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|335aa|down_7|NZ_CP045472.1_800629_801634_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|69aa|down_8|NZ_CP045472.1_802423_802630_-	NA	NA|203aa|down_9|NZ_CP045472.1_802695_803304_-	pfam01063, Aminotran_4, Amino-transferase class IV
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	5	906829-906922	5	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	TGCGCAAGCAAACCAACTGTATTC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|239aa|up_6|NZ_CP045472.1_900016_900733_-,NA|169aa|up_5|NZ_CP045472.1_900894_901401_-,NA|39aa|down_8|NZ_CP045472.1_916022_916139_-	NA|310aa|up_9|NZ_CP045472.1_896556_897486_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_8|NZ_CP045472.1_898433_898808_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_7|NZ_CP045472.1_899060_899849_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_6|NZ_CP045472.1_900016_900733_-	NA	NA|169aa|up_5|NZ_CP045472.1_900894_901401_-	NA	NA|267aa|up_4|NZ_CP045472.1_901536_902337_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_3|NZ_CP045472.1_902320_903040_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|162aa|up_2|NZ_CP045472.1_903713_904199_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|276aa|up_1|NZ_CP045472.1_904937_905765_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|up_0|NZ_CP045472.1_906134_906770_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_0|NZ_CP045472.1_907035_908697_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_1|NZ_CP045472.1_908693_909077_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_2|NZ_CP045472.1_909384_910395_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_3|NZ_CP045472.1_910893_911415_-	pfam08741, YwhD, YwhD family	NA|432aa|down_4|NZ_CP045472.1_911442_912738_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_5|NZ_CP045472.1_912777_913254_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_6|NZ_CP045472.1_913423_913960_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_7|NZ_CP045472.1_914169_915108_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|39aa|down_8|NZ_CP045472.1_916022_916139_-	NA	NA|210aa|down_9|NZ_CP045472.1_916195_916825_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	6	1571791-1571876	6	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	12	1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846|1571821-1571846	NZ_CP045472.1_270020-270045|NZ_CP045472.1_407003-406978|NZ_CP045472.1_943012-942987|NZ_CP045472.1_733990-734015|NZ_CP045472.1_2175406-2175431|NZ_CP045472.1_2350602-2350627|NZ_CP045472.1_779958-779933|NZ_CP045472.1_780014-779989|NZ_CP045472.1_2058695-2058670|NZ_CP045472.1_2533582-2533557|NZ_CP045472.1_2254432-2254407|NZ_CP045472.1_2254770-2254745	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA|64aa|down_4|NZ_CP045472.1_1574454_1574646_-,NA|166aa|down_5|NZ_CP045472.1_1575102_1575600_+,NA|64aa|down_6|NZ_CP045472.1_1576206_1576398_-,NA|47aa|down_9|NZ_CP045472.1_1579917_1580058_-	NA|79aa|up_9|NZ_CP045472.1_1560938_1561175_-	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA	NA|162aa|up_8|NZ_CP045472.1_1561632_1562118_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|378aa|up_7|NZ_CP045472.1_1562308_1563442_-	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|454aa|up_6|NZ_CP045472.1_1563719_1565081_-	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|46aa|up_5|NZ_CP045472.1_1565810_1565948_+	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|118aa|up_4|NZ_CP045472.1_1566068_1566422_+	PRK00499, rnpA, ribonuclease P; Reviewed	NA|460aa|up_3|NZ_CP045472.1_1566565_1567945_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|626aa|up_2|NZ_CP045472.1_1568011_1569889_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|240aa|up_1|NZ_CP045472.1_1569888_1570608_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|280aa|up_0|NZ_CP045472.1_1570650_1571490_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|118aa|down_0|NZ_CP045472.1_1572099_1572453_+	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|132aa|down_1|NZ_CP045472.1_1572520_1572916_+	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|190aa|down_2|NZ_CP045472.1_1573166_1573736_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|67aa|down_3|NZ_CP045472.1_1573862_1574063_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|64aa|down_4|NZ_CP045472.1_1574454_1574646_-	NA	NA|166aa|down_5|NZ_CP045472.1_1575102_1575600_+	NA	NA|64aa|down_6|NZ_CP045472.1_1576206_1576398_-	NA	NA|253aa|down_7|NZ_CP045472.1_1578360_1579119_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|171aa|down_8|NZ_CP045472.1_1579408_1579921_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|47aa|down_9|NZ_CP045472.1_1579917_1580058_-	NA
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	7	1838122-1838255	1	PILER-CR	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|68aa|up_8|NZ_CP045472.1_1826350_1826554_+,NA|62aa|up_0|NZ_CP045472.1_1835210_1835396_+,NA|78aa|down_6|NZ_CP045472.1_1851782_1852016_+,NA|103aa|down_7|NZ_CP045472.1_1852123_1852432_-,NA|89aa|down_8|NZ_CP045472.1_1852575_1852842_-	NA|426aa|up_9|NZ_CP045472.1_1824876_1826154_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|68aa|up_8|NZ_CP045472.1_1826350_1826554_+	NA	NA|608aa|up_7|NZ_CP045472.1_1827065_1828889_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP045472.1_1829015_1829432_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP045472.1_1829662_1830355_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP045472.1_1830519_1831284_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP045472.1_1831437_1832118_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP045472.1_1832141_1833695_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP045472.1_1833811_1835170_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|62aa|up_0|NZ_CP045472.1_1835210_1835396_+	NA	NA|955aa|down_0|NZ_CP045472.1_1839491_1842356_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP045472.1_1842542_1843409_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP045472.1_1843619_1844363_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP045472.1_1844686_1845043_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1628aa|down_4|NZ_CP045472.1_1845348_1850232_+	pfam18483, Bact_lectin, Bacterial lectin	NA|392aa|down_5|NZ_CP045472.1_1850613_1851789_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|NZ_CP045472.1_1851782_1852016_+	NA	NA|103aa|down_7|NZ_CP045472.1_1852123_1852432_-	NA	NA|89aa|down_8|NZ_CP045472.1_1852575_1852842_-	NA	NA|546aa|down_9|NZ_CP045472.1_1853125_1854763_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	8	1841796-1841928	2	PILER-CR	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	ATTGAAGAAGATACAA	16	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|68aa|up_9|NZ_CP045472.1_1826350_1826554_+,NA|62aa|up_1|NZ_CP045472.1_1835210_1835396_+,NA|78aa|down_5|NZ_CP045472.1_1851782_1852016_+,NA|103aa|down_6|NZ_CP045472.1_1852123_1852432_-,NA|89aa|down_7|NZ_CP045472.1_1852575_1852842_-	NA|68aa|up_9|NZ_CP045472.1_1826350_1826554_+	NA	NA|608aa|up_8|NZ_CP045472.1_1827065_1828889_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP045472.1_1829015_1829432_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP045472.1_1829662_1830355_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP045472.1_1830519_1831284_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP045472.1_1831437_1832118_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP045472.1_1832141_1833695_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP045472.1_1833811_1835170_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|62aa|up_1|NZ_CP045472.1_1835210_1835396_+	NA	NA|1057aa|up_0|NZ_CP045472.1_1835638_1838809_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP045472.1_1842542_1843409_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP045472.1_1843619_1844363_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP045472.1_1844686_1845043_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1628aa|down_3|NZ_CP045472.1_1845348_1850232_+	pfam18483, Bact_lectin, Bacterial lectin	NA|392aa|down_4|NZ_CP045472.1_1850613_1851789_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP045472.1_1851782_1852016_+	NA	NA|103aa|down_6|NZ_CP045472.1_1852123_1852432_-	NA	NA|89aa|down_7|NZ_CP045472.1_1852575_1852842_-	NA	NA|546aa|down_8|NZ_CP045472.1_1853125_1854763_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP045472.1_1855049_1855442_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	9	1938458-1938550	7	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	CTTTCTAACAAATAAATTTGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|32aa|up_0|NZ_CP045472.1_1938157_1938253_+,NA|35aa|down_2|NZ_CP045472.1_1940791_1940896_-	NA|453aa|up_9|NZ_CP045472.1_1928144_1929503_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP045472.1_1929504_1930512_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP045472.1_1930489_1931605_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP045472.1_1931615_1932308_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP045472.1_1932318_1932786_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP045472.1_1932837_1933815_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP045472.1_1933816_1934764_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP045472.1_1935331_1936261_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|437aa|up_1|NZ_CP045472.1_1936752_1938063_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|32aa|up_0|NZ_CP045472.1_1938157_1938253_+	NA	NA|289aa|down_0|NZ_CP045472.1_1938759_1939626_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP045472.1_1939951_1940638_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP045472.1_1940791_1940896_-	NA	NA|480aa|down_3|NZ_CP045472.1_1941069_1942509_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP045472.1_1942629_1943409_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP045472.1_1943389_1944109_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP045472.1_1944105_1944837_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP045472.1_1944933_1946184_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP045472.1_1946438_1946801_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP045472.1_1946819_1947419_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	10	2092972-2093056	8	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	2093002-2093026|2093002-2093026|2093002-2093026|2093002-2093026	NZ_CP045472.1_2092946-2092970|NZ_CP045472.1_2504712-2504736|NZ_CP045472.1_407117-407093|NZ_CP045472.1_407173-407149	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA,NA|57aa|down_0|NZ_CP045472.1_2093134_2093305_-,NA|84aa|down_5|NZ_CP045472.1_2096445_2096697_-,NA|106aa|down_8|NZ_CP045472.1_2101821_2102139_-,NA|55aa|down_9|NZ_CP045472.1_2102383_2102548_-	NA|202aa|up_9|NZ_CP045472.1_2085831_2086437_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP045472.1_2086605_2087610_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP045472.1_2087640_2088147_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP045472.1_2088148_2088643_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP045472.1_2088705_2089965_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP045472.1_2089961_2090447_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP045472.1_2090460_2090907_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP045472.1_2090912_2091146_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP045472.1_2091152_2091752_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP045472.1_2091771_2092794_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP045472.1_2093134_2093305_-	NA	NA|117aa|down_1|NZ_CP045472.1_2093430_2093781_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP045472.1_2093882_2095094_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP045472.1_2095086_2095527_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP045472.1_2095689_2096454_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP045472.1_2096445_2096697_-	NA	NA|422aa|down_6|NZ_CP045472.1_2097085_2098351_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP045472.1_2098467_2101635_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP045472.1_2101821_2102139_-	NA	NA|55aa|down_9|NZ_CP045472.1_2102383_2102548_-	NA
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	11	2400271-2400352	9	CRISPRCasFinder	no	DEDDh	DinG,DEDDh,cas3,WYL,csa3	Unclear	AATGCAAGTTGGCGGGGCCCCAACA	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|31aa|up_6|NZ_CP045472.1_2394936_2395029_+,NA|37aa|up_2|NZ_CP045472.1_2398034_2398145_+,NA|138aa|up_1|NZ_CP045472.1_2398173_2398587_+,NA|129aa|down_1|NZ_CP045472.1_2401509_2401896_+,NA|92aa|down_6|NZ_CP045472.1_2405878_2406154_-	NA|177aa|up_9|NZ_CP045472.1_2392251_2392782_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP045472.1_2393028_2394099_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP045472.1_2394165_2394720_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP045472.1_2394936_2395029_+	NA	NA|167aa|up_5|NZ_CP045472.1_2395110_2395611_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP045472.1_2395902_2397216_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP045472.1_2397217_2397949_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP045472.1_2398034_2398145_+	NA	NA|138aa|up_1|NZ_CP045472.1_2398173_2398587_+	NA	NA|329aa|up_0|NZ_CP045472.1_2399019_2400006_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP045472.1_2400534_2401293_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP045472.1_2401509_2401896_+	NA	NA|234aa|down_2|NZ_CP045472.1_2401910_2402612_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP045472.1_2402608_2403652_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP045472.1_2403641_2404271_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP045472.1_2404383_2405601_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP045472.1_2405878_2406154_-	NA	NA|155aa|down_7|NZ_CP045472.1_2406160_2406625_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP045472.1_2406771_2406972_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP045472.1_2406974_2408231_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_009684655.1_ASM968465v1	NZ_CP045472	Staphylococcus aureus strain ZY05 chromosome, complete genome	12	2592963-2593042	10	CRISPRCasFinder	no		DinG,DEDDh,cas3,WYL,csa3	Orphan	TGTAGAATTTCTTTTCGAAATTCT	24	1	1	2592987-2593018	NZ_CP045472.1_411236-411267	NA	1	1	Orphan	DinG,DEDDh,cas3,WYL,csa3	NA|38aa|up_4|NZ_CP045472.1_2588479_2588593_+,NA	NA|165aa|up_9|NZ_CP045472.1_2583496_2583991_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP045472.1_2584113_2585061_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP045472.1_2585148_2586351_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP045472.1_2586596_2587097_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP045472.1_2587237_2588356_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|38aa|up_4|NZ_CP045472.1_2588479_2588593_+	NA	NA|352aa|up_3|NZ_CP045472.1_2588671_2589727_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP045472.1_2589901_2590591_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP045472.1_2590978_2591392_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP045472.1_2591596_2592895_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP045472.1_2593344_2594286_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_1|NZ_CP045472.1_2594306_2597504_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_2|NZ_CP045472.1_2597953_2599183_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_3|NZ_CP045472.1_2599377_2600235_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_4|NZ_CP045472.1_2600234_2601179_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_5|NZ_CP045472.1_2601447_2602416_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_6|NZ_CP045472.1_2602437_2604195_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_7|NZ_CP045472.1_2604541_2605903_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_8|NZ_CP045472.1_2606250_2607372_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_9|NZ_CP045472.1_2607420_2608689_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed
