assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676725.1_ASM967672v1	NZ_CP046041	Streptococcus equi subsp. zooepidemicus strain AZ-45470 chromosome, complete genome	1	453210-453280	1	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	TCCTGTGGCTTTTCAGAGATAGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|76aa|up_7|NZ_CP046041.1_446293_446521_-,NA|101aa|up_1|NZ_CP046041.1_451810_452113_-,NA|73aa|down_4|NZ_CP046041.1_457360_457579_-	NA|270aa|up_9|NZ_CP046041.1_444196_445006_-	PRK15065, PRK15065, mannose/fructose/sorbose family PTS transporter subunit IIC	NA|331aa|up_8|NZ_CP046041.1_445173_446166_-	PRK15088, PRK15088, PTS system mannose-specific transporter subunits IIAB; Provisional	NA|76aa|up_7|NZ_CP046041.1_446293_446521_-	NA	NA|271aa|up_6|NZ_CP046041.1_446517_447330_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|487aa|up_5|NZ_CP046041.1_447588_449049_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|148aa|up_4|NZ_CP046041.1_449417_449861_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|176aa|up_3|NZ_CP046041.1_449853_450381_+	PRK10140, PRK10140, N-acetyltransferase	NA|421aa|up_2|NZ_CP046041.1_450381_451644_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|101aa|up_1|NZ_CP046041.1_451810_452113_-	NA	NA|140aa|up_0|NZ_CP046041.1_452109_452529_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|242aa|down_0|NZ_CP046041.1_453915_454641_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|345aa|down_1|NZ_CP046041.1_454644_455679_+	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|264aa|down_2|NZ_CP046041.1_455741_456533_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|212aa|down_3|NZ_CP046041.1_456532_457168_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|73aa|down_4|NZ_CP046041.1_457360_457579_-	NA	NA|161aa|down_5|NZ_CP046041.1_458558_459041_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|385aa|down_6|NZ_CP046041.1_459150_460305_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|99aa|down_7|NZ_CP046041.1_460320_460617_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|101aa|down_8|NZ_CP046041.1_460609_460912_+	PRK07283, PRK07283, YlxQ-related RNA-binding protein	NA|959aa|down_9|NZ_CP046041.1_460931_463808_+	PRK05306, infB, translation initiation factor IF-2; Validated
GCF_009676725.1_ASM967672v1	NZ_CP046041	Streptococcus equi subsp. zooepidemicus strain AZ-45470 chromosome, complete genome	2	567720-570199	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	 Type I-U?,Type I-U,Type I-C	GTCTCGCCCCATACGGGCGAGTGGATTGAAAT,GTCTCGCCCCATACGGGCGAGTGGATTGAAAT,GTCTCGCCCCATACGGGCGAGTGGATTGAAAT,CGGGCGAGTGGATTGAAAT	32,32,32,19	0	0	NA	NA	I-C:I-C:I-C:NA	33,37,37,33	37	TypeI-U,TypeI-C,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|377aa|up_9|NZ_CP046041.1_556322_557453_+,NA|130aa|up_8|NZ_CP046041.1_557434_557824_+,NA	NA|377aa|up_9|NZ_CP046041.1_556322_557453_+	NA	NA|130aa|up_8|NZ_CP046041.1_557434_557824_+	NA	NA|108aa|up_7|NZ_CP046041.1_558475_558799_+	pfam15597, Imm59, Immunity protein 59	cas3|818aa|up_6|NZ_CP046041.1_559425_561879_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|240aa|up_5|NZ_CP046041.1_562120_562840_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|628aa|up_4|NZ_CP046041.1_562839_564723_+	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|283aa|up_3|NZ_CP046041.1_564723_565572_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_2|NZ_CP046041.1_565573_566245_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|NZ_CP046041.1_566241_567267_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP046041.1_567277_567571_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|237aa|down_0|NZ_CP046041.1_570602_571313_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|224aa|down_1|NZ_CP046041.1_571326_571998_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|371aa|down_2|NZ_CP046041.1_572015_573128_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|NZ_CP046041.1_573396_574137_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|573aa|down_4|NZ_CP046041.1_574133_575852_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|363aa|down_5|NZ_CP046041.1_575891_576980_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|235aa|down_6|NZ_CP046041.1_576994_577699_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|163aa|down_7|NZ_CP046041.1_577958_578447_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|158aa|down_8|NZ_CP046041.1_579007_579481_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_9|NZ_CP046041.1_579621_580302_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCF_009676725.1_ASM967672v1	NZ_CP046041	Streptococcus equi subsp. zooepidemicus strain AZ-45470 chromosome, complete genome	3	871574-871759	2	CRT	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	CCAAAACCNGAACCTAAG	18	3	28	871592-871609|871592-871609|871592-871609|871592-871609|871592-871609|871592-871609|871592-871609|871592-871609|871628-871657|871628-871657|871628-871657|871628-871657|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693|871676-871693	NZ_CP046041.1_522814-522831|NZ_CP046041.1_522838-522855|NZ_CP046041.1_522886-522903|NZ_CP046041.1_522910-522927|NZ_CP046041.1_522766-522783|NZ_CP046041.1_522790-522807|NZ_CP046041.1_522862-522879|NZ_CP046041.1_1529774-1529791|NZ_CP046041.1_522838-522867|NZ_CP046041.1_522910-522939|NZ_CP046041.1_522766-522795|NZ_CP046041.1_522730-522759|NZ_CP046041.1_522802-522819|NZ_CP046041.1_522826-522843|NZ_CP046041.1_522874-522891|NZ_CP046041.1_522898-522915|NZ_CP046041.1_504463-504446|NZ_CP046041.1_504577-504560|NZ_CP046041.1_352988-352971|NZ_CP046041.1_504295-504278|NZ_CP046041.1_504313-504296|NZ_CP046041.1_504445-504428|NZ_CP046041.1_505940-505923|NZ_CP046041.1_1574045-1574062|NZ_CP046041.1_1574075-1574092|NZ_CP046041.1_1574105-1574122|NZ_CP046041.1_1574177-1574194|NZ_CP046041.1_1574207-1574224	NA	4	4	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA,NA|179aa|down_5|NZ_CP046041.1_879943_880480_-,NA|94aa|down_6|NZ_CP046041.1_880490_880772_-,NA|152aa|down_7|NZ_CP046041.1_880771_881227_-	NA|469aa|up_9|NZ_CP046041.1_859238_860645_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|139aa|up_8|NZ_CP046041.1_860657_861074_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|79aa|up_7|NZ_CP046041.1_861207_861444_+	TIGR02327, conserved_hypothetical_protein, conserved hypothetical integral membrane protein	NA|424aa|up_6|NZ_CP046041.1_861507_862779_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|63aa|up_5|NZ_CP046041.1_862782_862971_+	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta	NA|293aa|up_4|NZ_CP046041.1_863002_863881_+	smart00892, Endonuclease_NS, DNA/RNA non-specific endonuclease	NA|348aa|up_3|NZ_CP046041.1_864792_865836_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|802aa|up_2|NZ_CP046041.1_866025_868431_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|359aa|up_1|NZ_CP046041.1_868667_869744_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|235aa|up_0|NZ_CP046041.1_869753_870458_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|655aa|down_0|NZ_CP046041.1_872732_874697_+	pfam05738, Cna_B, Cna protein B-type domain	NA|481aa|down_1|NZ_CP046041.1_874711_876154_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|down_2|NZ_CP046041.1_876234_877044_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|393aa|down_3|NZ_CP046041.1_877358_878537_+	pfam09028, Mac-1, Mac 1	NA|383aa|down_4|NZ_CP046041.1_878616_879765_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|179aa|down_5|NZ_CP046041.1_879943_880480_-	NA	NA|94aa|down_6|NZ_CP046041.1_880490_880772_-	NA	NA|152aa|down_7|NZ_CP046041.1_880771_881227_-	NA	NA|1239aa|down_8|NZ_CP046041.1_882334_886051_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_9|NZ_CP046041.1_886339_886879_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]
GCF_009676725.1_ASM967672v1	NZ_CP046041	Streptococcus equi subsp. zooepidemicus strain AZ-45470 chromosome, complete genome	4	886190-886299	3	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Orphan	CTGACTTGATGACAGCTTATACTAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA|179aa|up_3|NZ_CP046041.1_879943_880480_-,NA|94aa|up_2|NZ_CP046041.1_880490_880772_-,NA|152aa|up_1|NZ_CP046041.1_880771_881227_-,NA|714aa|down_5|NZ_CP046041.1_890463_892605_+	NA|371aa|up_9|NZ_CP046041.1_870796_871909_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|655aa|up_8|NZ_CP046041.1_872732_874697_+	pfam05738, Cna_B, Cna protein B-type domain	NA|481aa|up_7|NZ_CP046041.1_874711_876154_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|270aa|up_6|NZ_CP046041.1_876234_877044_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|393aa|up_5|NZ_CP046041.1_877358_878537_+	pfam09028, Mac-1, Mac 1	NA|383aa|up_4|NZ_CP046041.1_878616_879765_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|179aa|up_3|NZ_CP046041.1_879943_880480_-	NA	NA|94aa|up_2|NZ_CP046041.1_880490_880772_-	NA	NA|152aa|up_1|NZ_CP046041.1_880771_881227_-	NA	NA|1239aa|up_0|NZ_CP046041.1_882334_886051_+	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|180aa|down_0|NZ_CP046041.1_886339_886879_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|212aa|down_1|NZ_CP046041.1_886868_887504_+	pfam13490, zf-HC2, Putative zinc-finger	NA|232aa|down_2|NZ_CP046041.1_887631_888327_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_3|NZ_CP046041.1_888340_889018_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|478aa|down_4|NZ_CP046041.1_889023_890457_+	pfam08757, CotH, CotH kinase protein	NA|714aa|down_5|NZ_CP046041.1_890463_892605_+	NA	NA|465aa|down_6|NZ_CP046041.1_892751_894146_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|1074aa|down_7|NZ_CP046041.1_894356_897578_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1215aa|down_8|NZ_CP046041.1_897567_901212_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|375aa|down_9|NZ_CP046041.1_901475_902600_+	PRK07324, PRK07324, transaminase; Validated
GCF_009676725.1_ASM967672v1	NZ_CP046041	Streptococcus equi subsp. zooepidemicus strain AZ-45470 chromosome, complete genome	5	1413488-1413788	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC,GTTTTGGAACCATTCAATACAGCATAACTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	4,4,3	4	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,csm6,csn2,cas9	NA,NA	NA|434aa|up_9|NZ_CP046041.1_1399418_1400720_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|270aa|up_8|NZ_CP046041.1_1400944_1401754_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|405aa|up_7|NZ_CP046041.1_1401753_1402968_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|412aa|up_6|NZ_CP046041.1_1402967_1404203_+	pfam02388, FemAB, FemAB family	NA|253aa|up_5|NZ_CP046041.1_1404411_1405170_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|399aa|up_4|NZ_CP046041.1_1405435_1406632_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|1049aa|up_3|NZ_CP046041.1_1407580_1410727_+	pfam03272, Mucin_bdg, Putative mucin or carbohydrate-binding module	NA|363aa|up_2|NZ_CP046041.1_1411016_1412105_-	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal	NA|157aa|up_1|NZ_CP046041.1_1412088_1412559_-	TIGR02950, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma factor, SigM family	NA|70aa|up_0|NZ_CP046041.1_1412915_1413125_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csn2|225aa|down_0|NZ_CP046041.1_1414063_1414738_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP046041.1_1414730_1415075_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP046041.1_1415071_1415941_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1349aa|down_3|NZ_CP046041.1_1415940_1419987_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|108aa|down_4|NZ_CP046041.1_1420497_1420821_-	pfam15597, Imm59, Immunity protein 59	NA|183aa|down_5|NZ_CP046041.1_1420821_1421370_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|249aa|down_6|NZ_CP046041.1_1421513_1422260_-	pfam08929, DUF1911, Domain of unknown function (DUF1911)	NA|141aa|down_7|NZ_CP046041.1_1423234_1423657_-	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase	NA|135aa|down_8|NZ_CP046041.1_1423846_1424251_-	pfam15599, Imm63, Immunity protein 63	NA|392aa|down_9|NZ_CP046041.1_1424259_1425435_-	pfam14021, TNT, Tuberculosis necrotizing toxin
