assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	1	130685-130790	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	GTGGGTGCCGACCGTTGGTCGGCAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA,NA|105aa|down_2|NZ_CP040440.1_132967_133282_+,NA|296aa|down_9|NZ_CP040440.1_140695_141583_-	NA|264aa|up_9|NZ_CP040440.1_119903_120695_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|345aa|up_8|NZ_CP040440.1_120702_121737_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|690aa|up_7|NZ_CP040440.1_121793_123863_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|204aa|up_6|NZ_CP040440.1_123873_124485_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|159aa|up_5|NZ_CP040440.1_124569_125046_-	COG3187, HslJ, Heat shock protein [Posttranslational modification, protein turnover, chaperones]	NA|276aa|up_4|NZ_CP040440.1_125188_126016_-	pfam14302, DUF4377, Domain of unknown function (DUF4377)	NA|265aa|up_3|NZ_CP040440.1_126089_126884_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|470aa|up_2|NZ_CP040440.1_127107_128517_+	PRK09469, glnA, glutamate--ammonia ligase	NA|113aa|up_1|NZ_CP040440.1_128864_129203_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|477aa|up_0|NZ_CP040440.1_129224_130655_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|249aa|down_0|NZ_CP040440.1_130878_131625_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|389aa|down_1|NZ_CP040440.1_131692_132859_+	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]	NA|105aa|down_2|NZ_CP040440.1_132967_133282_+	NA	NA|682aa|down_3|NZ_CP040440.1_133389_135435_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|354aa|down_4|NZ_CP040440.1_135605_136667_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|483aa|down_5|NZ_CP040440.1_136659_138108_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|190aa|down_6|NZ_CP040440.1_138201_138771_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|209aa|down_7|NZ_CP040440.1_138802_139429_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|356aa|down_8|NZ_CP040440.1_139529_140597_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|296aa|down_9|NZ_CP040440.1_140695_141583_-	NA
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	2	548411-548559	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	GCGGCCGACCTTGGTCGGCGCGGTGAATGCGTGTCGACCAGGGTCGACACCT	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA|163aa|up_8|NZ_CP040440.1_541483_541972_-,NA|59aa|up_3|NZ_CP040440.1_545117_545294_+,NA|88aa|down_3|NZ_CP040440.1_551782_552046_-	NA|92aa|up_9|NZ_CP040440.1_541194_541470_-	pfam13223, DUF4031, Protein of unknown function (DUF4031)	NA|163aa|up_8|NZ_CP040440.1_541483_541972_-	NA	NA|313aa|up_7|NZ_CP040440.1_542099_543038_-	PRK09041, motB, motility protein MotB	NA|285aa|up_6|NZ_CP040440.1_543041_543896_-	PRK09110, PRK09110, flagellar motor stator protein MotA	NA|156aa|up_5|NZ_CP040440.1_543987_544455_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|126aa|up_4|NZ_CP040440.1_544595_544973_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|59aa|up_3|NZ_CP040440.1_545117_545294_+	NA	NA|160aa|up_2|NZ_CP040440.1_545404_545884_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_1|NZ_CP040440.1_546033_547338_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_0|NZ_CP040440.1_547316_548384_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|188aa|down_0|NZ_CP040440.1_548569_549133_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|down_1|NZ_CP040440.1_549377_551366_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|down_2|NZ_CP040440.1_551409_551700_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|down_3|NZ_CP040440.1_551782_552046_-	NA	NA|355aa|down_4|NZ_CP040440.1_552202_553267_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|down_5|NZ_CP040440.1_553263_553965_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|down_6|NZ_CP040440.1_553961_554645_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_7|NZ_CP040440.1_554759_555968_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_8|NZ_CP040440.1_555967_556483_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|365aa|down_9|NZ_CP040440.1_556673_557768_+	PRK02406, PRK02406, DNA polymerase IV; Validated
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	3	554648-554750	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	GGTAGGTGCCGACCGTTGGTCGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA|88aa|up_3|NZ_CP040440.1_551782_552046_-,NA	NA|160aa|up_9|NZ_CP040440.1_545404_545884_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_8|NZ_CP040440.1_546033_547338_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_7|NZ_CP040440.1_547316_548384_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|188aa|up_6|NZ_CP040440.1_548569_549133_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|up_5|NZ_CP040440.1_549377_551366_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|up_4|NZ_CP040440.1_551409_551700_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|up_3|NZ_CP040440.1_551782_552046_-	NA	NA|355aa|up_2|NZ_CP040440.1_552202_553267_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|up_1|NZ_CP040440.1_553263_553965_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|up_0|NZ_CP040440.1_553961_554645_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_0|NZ_CP040440.1_554759_555968_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NZ_CP040440.1_555967_556483_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|365aa|down_2|NZ_CP040440.1_556673_557768_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_3|NZ_CP040440.1_558047_558959_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|213aa|down_4|NZ_CP040440.1_559120_559759_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|310aa|down_5|NZ_CP040440.1_559867_560797_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|264aa|down_6|NZ_CP040440.1_560793_561585_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|219aa|down_7|NZ_CP040440.1_561649_562306_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|614aa|down_8|NZ_CP040440.1_562447_564289_-	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|193aa|down_9|NZ_CP040440.1_564770_565349_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	4	782184-782283	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	TCATCCACGCATGGCGTGGATCT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA|617aa|up_4|NZ_CP040440.1_775288_777139_-,NA|144aa|up_1|NZ_CP040440.1_779444_779876_-,NA|309aa|down_5|NZ_CP040440.1_789309_790236_+	NA|404aa|up_9|NZ_CP040440.1_768979_770191_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|up_8|NZ_CP040440.1_770513_772229_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|up_7|NZ_CP040440.1_772225_773026_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|353aa|up_6|NZ_CP040440.1_773164_774223_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|337aa|up_5|NZ_CP040440.1_774281_775292_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|617aa|up_4|NZ_CP040440.1_775288_777139_-	NA	NA|276aa|up_3|NZ_CP040440.1_777277_778105_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|up_2|NZ_CP040440.1_778162_779158_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|up_1|NZ_CP040440.1_779444_779876_-	NA	NA|306aa|up_0|NZ_CP040440.1_779985_780903_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|433aa|down_0|NZ_CP040440.1_783272_784571_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|324aa|down_1|NZ_CP040440.1_784764_785736_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|65aa|down_2|NZ_CP040440.1_786040_786235_+	pfam10636, hemP, Hemin uptake protein hemP	NA|736aa|down_3|NZ_CP040440.1_786424_788632_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|200aa|down_4|NZ_CP040440.1_788636_789236_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|309aa|down_5|NZ_CP040440.1_789309_790236_+	NA	NA|839aa|down_6|NZ_CP040440.1_790343_792860_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|216aa|down_7|NZ_CP040440.1_792856_793504_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|215aa|down_8|NZ_CP040440.1_793579_794224_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|249aa|down_9|NZ_CP040440.1_794278_795025_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	5	2362300-2362552	1	PILER-CR	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	GCGTGGCCCATGCACGGATAGGTAGAGCCGGCCGCTGGCCGGCTGCCGGGTCC	53	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA,NA|249aa|down_6|NZ_CP040440.1_2366718_2367465_+	NA|314aa|up_9|NZ_CP040440.1_2353722_2354664_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|456aa|up_8|NZ_CP040440.1_2354729_2356097_-	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|233aa|up_7|NZ_CP040440.1_2356093_2356792_-	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|295aa|up_6|NZ_CP040440.1_2356837_2357722_-	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|126aa|up_5|NZ_CP040440.1_2357732_2358110_-	pfam04234, CopC, CopC domain	NA|108aa|up_4|NZ_CP040440.1_2358236_2358560_-	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|313aa|up_3|NZ_CP040440.1_2358556_2359495_-	pfam04199, Cyclase, Putative cyclase	NA|316aa|up_2|NZ_CP040440.1_2359514_2360462_-	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family	NA|268aa|up_1|NZ_CP040440.1_2360473_2361277_-	PRK11172, dkgB, 2,5-didehydrogluconate reductase DkgB	NA|301aa|up_0|NZ_CP040440.1_2361395_2362298_+	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain	NA|158aa|down_0|NZ_CP040440.1_2362577_2363051_-	pfam03203, MerC, MerC mercury resistance protein	NA|178aa|down_1|NZ_CP040440.1_2363083_2363617_+	pfam10986, DUF2796, Protein of unknown function (DUF2796)	NA|232aa|down_2|NZ_CP040440.1_2363613_2364309_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|418aa|down_3|NZ_CP040440.1_2364301_2365555_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|184aa|down_4|NZ_CP040440.1_2365557_2366109_+	pfam11736, DUF3299, Protein of unknown function (DUF3299)	NA|207aa|down_5|NZ_CP040440.1_2366098_2366719_+	pfam11736, DUF3299, Protein of unknown function (DUF3299)	NA|249aa|down_6|NZ_CP040440.1_2366718_2367465_+	NA	NA|511aa|down_7|NZ_CP040440.1_2367616_2369149_+	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|186aa|down_8|NZ_CP040440.1_2369153_2369711_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|299aa|down_9|NZ_CP040440.1_2369880_2370777_-	pfam12852, Cupin_6, Cupin
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	6	3606597-3606700	5	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	CGGTAGTGCCGGCCGCTGGCCGGCAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA|180aa|up_6|NZ_CP040440.1_3599390_3599930_+,NA|97aa|up_5|NZ_CP040440.1_3599944_3600235_+,NA|221aa|up_1|NZ_CP040440.1_3604263_3604926_-,NA	NA|697aa|up_9|NZ_CP040440.1_3595898_3597989_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|163aa|up_8|NZ_CP040440.1_3598011_3598500_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|247aa|up_7|NZ_CP040440.1_3598509_3599250_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|180aa|up_6|NZ_CP040440.1_3599390_3599930_+	NA	NA|97aa|up_5|NZ_CP040440.1_3599944_3600235_+	NA	NA|709aa|up_4|NZ_CP040440.1_3600324_3602451_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|321aa|up_3|NZ_CP040440.1_3602683_3603646_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|226aa|up_2|NZ_CP040440.1_3603650_3604328_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|221aa|up_1|NZ_CP040440.1_3604263_3604926_-	NA	NA|431aa|up_0|NZ_CP040440.1_3605043_3606336_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|62aa|down_0|NZ_CP040440.1_3606735_3606921_-	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown]	NA|288aa|down_1|NZ_CP040440.1_3606988_3607852_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|378aa|down_2|NZ_CP040440.1_3607848_3608982_-	TIGR01933, Protein_HflK, HflK protein	NA|332aa|down_3|NZ_CP040440.1_3609135_3610131_+	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|124aa|down_4|NZ_CP040440.1_3610219_3610591_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|298aa|down_5|NZ_CP040440.1_3610679_3611573_-	PRK10266, PRK10266, curved DNA-binding protein	NA|161aa|down_6|NZ_CP040440.1_3611833_3612316_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|192aa|down_7|NZ_CP040440.1_3612345_3612921_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|794aa|down_8|NZ_CP040440.1_3612993_3615375_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|1636aa|down_9|NZ_CP040440.1_3615439_3620347_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	7	3877496-3877609	6	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	TTGGGTAGGTGCGGACCGTTGGTCCGCAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA,NA	NA|430aa|up_9|NZ_CP040440.1_3862554_3863844_+	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|267aa|up_8|NZ_CP040440.1_3863984_3864785_+	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane]	NA|862aa|up_7|NZ_CP040440.1_3864857_3867443_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|274aa|up_6|NZ_CP040440.1_3867624_3868446_-	pfam11219, DUF3014, Protein of unknown function (DUF3014)	NA|237aa|up_5|NZ_CP040440.1_3868615_3869326_+	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain	NA|535aa|up_4|NZ_CP040440.1_3869405_3871010_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|573aa|up_3|NZ_CP040440.1_3871614_3873333_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|286aa|up_2|NZ_CP040440.1_3873462_3874320_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|161aa|up_1|NZ_CP040440.1_3874356_3874839_-	pfam12098, DUF3574, Protein of unknown function (DUF3574)	NA|812aa|up_0|NZ_CP040440.1_3875054_3877490_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|253aa|down_0|NZ_CP040440.1_3877726_3878485_+	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|594aa|down_1|NZ_CP040440.1_3878526_3880308_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|455aa|down_2|NZ_CP040440.1_3880304_3881669_+	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]	NA|146aa|down_3|NZ_CP040440.1_3881741_3882179_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|169aa|down_4|NZ_CP040440.1_3882153_3882660_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|257aa|down_5|NZ_CP040440.1_3882680_3883451_-	PRK10723, PRK10723, polyphenol oxidase	NA|330aa|down_6|NZ_CP040440.1_3883450_3884440_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|296aa|down_7|NZ_CP040440.1_3884553_3885441_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|401aa|down_8|NZ_CP040440.1_3885631_3886834_+	pfam03583, LIP, Secretory lipase	NA|545aa|down_9|NZ_CP040440.1_3887321_3888956_-	PRK13981, PRK13981, NAD synthetase; Provisional
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	8	3990359-3990471	7	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA|215aa|up_7|NZ_CP040440.1_3977412_3978057_+,NA|248aa|up_6|NZ_CP040440.1_3978233_3978977_-,NA	NA|353aa|up_9|NZ_CP040440.1_3973381_3974440_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_8|NZ_CP040440.1_3974659_3977083_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|up_7|NZ_CP040440.1_3977412_3978057_+	NA	NA|248aa|up_6|NZ_CP040440.1_3978233_3978977_-	NA	NA|1459aa|up_5|NZ_CP040440.1_3979046_3983423_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|up_4|NZ_CP040440.1_3983491_3984199_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|380aa|up_3|NZ_CP040440.1_3984215_3985355_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|909aa|up_2|NZ_CP040440.1_3985351_3988078_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|170aa|up_1|NZ_CP040440.1_3988128_3988638_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|363aa|up_0|NZ_CP040440.1_3989156_3990245_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|426aa|down_0|NZ_CP040440.1_3990610_3991888_-	PRK05614, gltA, citrate synthase	NA|81aa|down_1|NZ_CP040440.1_3992184_3992427_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|313aa|down_2|NZ_CP040440.1_3992515_3993454_-	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	NA|704aa|down_3|NZ_CP040440.1_3993923_3996035_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|129aa|down_4|NZ_CP040440.1_3996042_3996429_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|721aa|down_5|NZ_CP040440.1_3996612_3998775_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|100aa|down_6|NZ_CP040440.1_3998880_3999180_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|222aa|down_7|NZ_CP040440.1_3999290_3999956_-	PRK00300, gmk, guanylate kinase; Provisional	NA|1023aa|down_8|NZ_CP040440.1_4000247_4003316_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|306aa|down_9|NZ_CP040440.1_4003326_4004244_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	9	4216613-4216713	8	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	GCTCGCTGTAAGCGAGGGGCTGAGGGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA|414aa|up_5|NZ_CP040440.1_4208653_4209895_-,NA	NA|606aa|up_9|NZ_CP040440.1_4203804_4205622_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_8|NZ_CP040440.1_4205856_4206240_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_7|NZ_CP040440.1_4206410_4207454_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_6|NZ_CP040440.1_4207743_4208649_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|414aa|up_5|NZ_CP040440.1_4208653_4209895_-	NA	NA|197aa|up_4|NZ_CP040440.1_4209912_4210503_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_3|NZ_CP040440.1_4210751_4212929_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|337aa|up_2|NZ_CP040440.1_4213208_4214219_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|237aa|up_1|NZ_CP040440.1_4214236_4214947_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_0|NZ_CP040440.1_4214934_4215213_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|406aa|down_0|NZ_CP040440.1_4216924_4218142_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|426aa|down_1|NZ_CP040440.1_4218242_4219520_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|down_2|NZ_CP040440.1_4219516_4220662_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|down_3|NZ_CP040440.1_4221653_4222748_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|down_4|NZ_CP040440.1_4222884_4223997_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|down_5|NZ_CP040440.1_4223993_4226069_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|down_6|NZ_CP040440.1_4226072_4226558_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|422aa|down_7|NZ_CP040440.1_4226554_4227820_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|349aa|down_8|NZ_CP040440.1_4227941_4228988_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_9|NZ_CP040440.1_4229271_4230210_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A
GCF_009676605.1_ASM967660v1	NZ_CP040440	Stenotrophomonas maltophilia strain ICU331 chromosome, complete genome	10	4642709-4642812	9	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	Orphan	GTGTGCCAACCAAGGTTGGCACCTA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK,Cas9_archaeal,DinG,RT	NA|163aa|up_9|NZ_CP040440.1_4629289_4629778_-,NA|268aa|up_8|NZ_CP040440.1_4630575_4631379_+,NA|268aa|up_7|NZ_CP040440.1_4631434_4632238_-,NA|129aa|up_1|NZ_CP040440.1_4639598_4639985_-,NA|193aa|down_5|NZ_CP040440.1_4648916_4649495_+	NA|163aa|up_9|NZ_CP040440.1_4629289_4629778_-	NA	NA|268aa|up_8|NZ_CP040440.1_4630575_4631379_+	NA	NA|268aa|up_7|NZ_CP040440.1_4631434_4632238_-	NA	NA|345aa|up_6|NZ_CP040440.1_4632905_4633940_-	pfam06527, TniQ, TniQ	NA|391aa|up_5|NZ_CP040440.1_4634030_4635202_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|305aa|up_4|NZ_CP040440.1_4635152_4636067_-	pfam05621, TniB, Bacterial TniB protein	NA|635aa|up_3|NZ_CP040440.1_4636066_4637971_-	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|190aa|up_2|NZ_CP040440.1_4637974_4638544_-	NF033179, TnsA_like_Actin, TnsA-like heteromeric transposase endonuclease subunit	NA|129aa|up_1|NZ_CP040440.1_4639598_4639985_-	NA	NA|773aa|up_0|NZ_CP040440.1_4640093_4642412_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|278aa|down_0|NZ_CP040440.1_4642858_4643692_-	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|217aa|down_1|NZ_CP040440.1_4643841_4644492_+	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|437aa|down_2|NZ_CP040440.1_4644639_4645950_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|147aa|down_3|NZ_CP040440.1_4645942_4646383_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|589aa|down_4|NZ_CP040440.1_4647150_4648917_+	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases	NA|193aa|down_5|NZ_CP040440.1_4648916_4649495_+	NA	NA|227aa|down_6|NZ_CP040440.1_4649598_4650279_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|111aa|down_7|NZ_CP040440.1_4650290_4650623_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|212aa|down_8|NZ_CP040440.1_4650624_4651260_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|659aa|down_9|NZ_CP040440.1_4651256_4653233_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I
