assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676525.1_ASM967652v1	NZ_CP040435	Stenotrophomonas maltophilia strain PEG-42 chromosome, complete genome	1	151152-151251	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	Orphan	GTGGGTGCCGACCGTTGGTTGGCAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	NA,NA|105aa|down_3|NZ_CP040435.1_154084_154399_+,NA|77aa|down_7|NZ_CP040435.1_160286_160517_+	NA|145aa|up_9|NZ_CP040435.1_140366_140801_+	PRK10293, PRK10293, 1,4-dihydroxy-2-naphthoyl-CoA hydrolase	NA|264aa|up_8|NZ_CP040435.1_140922_141714_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|345aa|up_7|NZ_CP040435.1_141721_142756_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|690aa|up_6|NZ_CP040435.1_142812_144882_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|204aa|up_5|NZ_CP040435.1_144892_145504_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|275aa|up_4|NZ_CP040435.1_145656_146481_-	pfam14302, DUF4377, Domain of unknown function (DUF4377)	NA|265aa|up_3|NZ_CP040435.1_146554_147349_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|470aa|up_2|NZ_CP040435.1_147573_148983_+	PRK09469, glnA, glutamate--ammonia ligase	NA|113aa|up_1|NZ_CP040435.1_149330_149669_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|477aa|up_0|NZ_CP040435.1_149691_151122_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|249aa|down_0|NZ_CP040435.1_151364_152111_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|165aa|down_1|NZ_CP040435.1_152274_152769_+	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|385aa|down_2|NZ_CP040435.1_152820_153975_+	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]	NA|105aa|down_3|NZ_CP040435.1_154084_154399_+	NA	NA|193aa|down_4|NZ_CP040435.1_154714_155293_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|807aa|down_5|NZ_CP040435.1_156854_159275_+	pfam00665, rve, Integrase core domain	NA|334aa|down_6|NZ_CP040435.1_159274_160276_+	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	NA|77aa|down_7|NZ_CP040435.1_160286_160517_+	NA	NA|340aa|down_8|NZ_CP040435.1_160516_161536_+	pfam13191, AAA_16, AAA ATPase domain	NA|478aa|down_9|NZ_CP040435.1_161444_162878_+	pfam06527, TniQ, TniQ
GCF_009676525.1_ASM967652v1	NZ_CP040435	Stenotrophomonas maltophilia strain PEG-42 chromosome, complete genome	2	2823320-2823468	1	PILER-CR	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	Orphan	GCTGCCGACCGAACCGACCGTGCCGTTGAGCGCACCACCCACGGTACCGC	50	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	NA|101aa|up_1|NZ_CP040435.1_2818037_2818340_-,NA	NA|118aa|up_9|NZ_CP040435.1_2809414_2809768_-	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ	NA|284aa|up_8|NZ_CP040435.1_2809928_2810780_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|307aa|up_7|NZ_CP040435.1_2810854_2811775_-	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34)	NA|694aa|up_6|NZ_CP040435.1_2811906_2813988_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|605aa|up_5|NZ_CP040435.1_2814008_2815823_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|239aa|up_4|NZ_CP040435.1_2815924_2816641_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|136aa|up_3|NZ_CP040435.1_2816656_2817064_-	cd04781, HTH_MerR-like_sg6, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|276aa|up_2|NZ_CP040435.1_2817127_2817955_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|101aa|up_1|NZ_CP040435.1_2818037_2818340_-	NA	NA|279aa|up_0|NZ_CP040435.1_2818449_2819286_-	PRK10808, PRK10808, outer membrane protein A; Reviewed	NA|327aa|down_0|NZ_CP040435.1_2825030_2826011_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|64aa|down_1|NZ_CP040435.1_2826706_2826898_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|182aa|down_2|NZ_CP040435.1_2826965_2827511_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|159aa|down_3|NZ_CP040435.1_2827507_2827984_+	pfam07811, TadE, TadE-like protein	NA|345aa|down_4|NZ_CP040435.1_2828007_2829042_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|453aa|down_5|NZ_CP040435.1_2829059_2830418_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|419aa|down_6|NZ_CP040435.1_2830445_2831702_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|450aa|down_7|NZ_CP040435.1_2831686_2833036_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|319aa|down_8|NZ_CP040435.1_2833038_2833995_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|313aa|down_9|NZ_CP040435.1_2834023_2834962_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_009676525.1_ASM967652v1	NZ_CP040435	Stenotrophomonas maltophilia strain PEG-42 chromosome, complete genome	3	3158857-3158958	2	CRISPRCasFinder	no	DEDDh,csa3	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	Type I-A	GCGCCAACCAAGGTTGGCGACTACC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	NA|100aa|up_9|NZ_CP040435.1_3150606_3150906_+,NA|105aa|up_8|NZ_CP040435.1_3150913_3151228_+,NA|88aa|down_6|NZ_CP040435.1_3171445_3171709_-	NA|100aa|up_9|NZ_CP040435.1_3150606_3150906_+	NA	NA|105aa|up_8|NZ_CP040435.1_3150913_3151228_+	NA	NA|213aa|up_7|NZ_CP040435.1_3151235_3151874_+	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|221aa|up_6|NZ_CP040435.1_3151946_3152609_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|174aa|up_5|NZ_CP040435.1_3152628_3153150_+	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|425aa|up_4|NZ_CP040435.1_3153386_3154661_+	TIGR01814, kynureninase, kynureninase	NA|456aa|up_3|NZ_CP040435.1_3154692_3156060_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	DEDDh|480aa|up_2|NZ_CP040435.1_3156059_3157499_+	PRK11779, sbcB, exonuclease I; Provisional	NA|229aa|up_1|NZ_CP040435.1_3157495_3158182_+	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	NA|184aa|up_0|NZ_CP040435.1_3158237_3158789_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|315aa|down_0|NZ_CP040435.1_3158963_3159908_-	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|258aa|down_1|NZ_CP040435.1_3159955_3160729_-	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|1659aa|down_2|NZ_CP040435.1_3161022_3165999_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|219aa|down_3|NZ_CP040435.1_3166249_3166906_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|423aa|down_4|NZ_CP040435.1_3166905_3168174_+	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1058aa|down_5|NZ_CP040435.1_3168189_3171363_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|88aa|down_6|NZ_CP040435.1_3171445_3171709_-	NA	NA|383aa|down_7|NZ_CP040435.1_3171866_3173015_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	csa3|310aa|down_8|NZ_CP040435.1_3173168_3174098_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|365aa|down_9|NZ_CP040435.1_3174111_3175206_+	PRK09490, metH, B12-dependent methionine synthase; Provisional
GCF_009676525.1_ASM967652v1	NZ_CP040435	Stenotrophomonas maltophilia strain PEG-42 chromosome, complete genome	4	3357060-3357181	3	CRISPRCasFinder	no	Cas9_archaeal	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	Type II-A, or Type II-C?, Type II-B	TAAAGGGGGCGCGCCGACAGGCGCGGGGATTAGGAAGAATGCG	43	0	0	NA	NA	NA	1	1	TypeII-A,orTypeII-C?,TypeII-B	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	NA|162aa|up_6|NZ_CP040435.1_3349620_3350106_+,NA|68aa|down_2|NZ_CP040435.1_3360050_3360254_-,NA|69aa|down_4|NZ_CP040435.1_3361125_3361332_-,NA|95aa|down_5|NZ_CP040435.1_3361735_3362020_+,NA|58aa|down_9|NZ_CP040435.1_3363293_3363467_-	NA|352aa|up_9|NZ_CP040435.1_3346171_3347227_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|298aa|up_8|NZ_CP040435.1_3347249_3348143_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|309aa|up_7|NZ_CP040435.1_3348132_3349059_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|162aa|up_6|NZ_CP040435.1_3349620_3350106_+	NA	NA|254aa|up_5|NZ_CP040435.1_3350112_3350874_-	PRK07478, PRK07478, short chain dehydrogenase; Provisional	NA|281aa|up_4|NZ_CP040435.1_3351006_3351849_+	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|342aa|up_3|NZ_CP040435.1_3351923_3352949_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|184aa|up_2|NZ_CP040435.1_3353647_3354199_+	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins	NA|159aa|up_1|NZ_CP040435.1_3354361_3354838_+	pfam03168, LEA_2, Late embryogenesis abundant protein	NA|597aa|up_0|NZ_CP040435.1_3354902_3356693_+	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional	Cas9_archaeal|222aa|down_0|NZ_CP040435.1_3357262_3357928_+	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|636aa|down_1|NZ_CP040435.1_3358033_3359941_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|68aa|down_2|NZ_CP040435.1_3360050_3360254_-	NA	NA|191aa|down_3|NZ_CP040435.1_3360421_3360994_-	pfam11218, DUF3011, Protein of unknown function (DUF3011)	NA|69aa|down_4|NZ_CP040435.1_3361125_3361332_-	NA	NA|95aa|down_5|NZ_CP040435.1_3361735_3362020_+	NA	NA|78aa|down_6|NZ_CP040435.1_3362032_3362266_+	pfam07866, DUF1653, Protein of unknown function (DUF1653)	NA|191aa|down_7|NZ_CP040435.1_3362352_3362925_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|111aa|down_8|NZ_CP040435.1_3362938_3363271_+	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|58aa|down_9|NZ_CP040435.1_3363293_3363467_-	NA
GCF_009676525.1_ASM967652v1	NZ_CP040435	Stenotrophomonas maltophilia strain PEG-42 chromosome, complete genome	5	4186433-4186528	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	Orphan	GTGCCAACCAAGGTTGGCACCTACCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG	NA,NA|135aa|down_1|NZ_CP040435.1_4188735_4189140_+	NA|201aa|up_9|NZ_CP040435.1_4176752_4177355_+	pfam08212, Lipocalin_2, Lipocalin-like domain	NA|230aa|up_8|NZ_CP040435.1_4177423_4178113_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|336aa|up_7|NZ_CP040435.1_4178109_4179117_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|299aa|up_6|NZ_CP040435.1_4179317_4180214_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|161aa|up_5|NZ_CP040435.1_4180432_4180915_+	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ	NA|366aa|up_4|NZ_CP040435.1_4180949_4182047_-	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|376aa|up_3|NZ_CP040435.1_4182207_4183335_-	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase	NA|489aa|up_2|NZ_CP040435.1_4183352_4184819_-	cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase II-like	NA|189aa|up_1|NZ_CP040435.1_4185012_4185579_+	pfam07209, DUF1415, Protein of unknown function (DUF1415)	NA|268aa|up_0|NZ_CP040435.1_4185575_4186379_+	cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs	NA|677aa|down_0|NZ_CP040435.1_4186534_4188565_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|135aa|down_1|NZ_CP040435.1_4188735_4189140_+	NA	NA|371aa|down_2|NZ_CP040435.1_4189278_4190391_-	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|172aa|down_3|NZ_CP040435.1_4190513_4191029_+	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor	NA|143aa|down_4|NZ_CP040435.1_4191119_4191548_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|144aa|down_5|NZ_CP040435.1_4191615_4192047_-	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes	NA|613aa|down_6|NZ_CP040435.1_4192494_4194333_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|426aa|down_7|NZ_CP040435.1_4194536_4195814_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|242aa|down_8|NZ_CP040435.1_4195849_4196575_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|433aa|down_9|NZ_CP040435.1_4196585_4197884_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease
