The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040433	Stenotrophomonas maltophilia strain SKK55 chromosome, complete genome	4675446	575777	585472	4675446		Enterobacteria_phage(42.86%)	7	NA	NA
WP_154350198.1|575777_576833_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	45.6	1.6e-78
WP_061480209.1|576847_577735_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.2	1.4e-96
WP_154350199.1|577731_578289_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.1	1.2e-45
WP_154350200.1|578285_579179_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.8	1.1e-27
WP_154350201.1|579300_580704_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.1	4.2e-47
WP_154350202.1|580715_582062_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	25.9	3.2e-28
WP_154350203.1|582160_585472_-	helicase	NA	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	30.5	1.8e-48
>prophage 2
NZ_CP040433	Stenotrophomonas maltophilia strain SKK55 chromosome, complete genome	4675446	898317	978104	4675446	transposase,protease,integrase	Bacillus_phage(21.43%)	57	946708:946722	979792:979806
WP_154351695.1|898317_899520_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	54.1	5.7e-117
WP_061480603.1|899608_900304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154351696.1|900488_901511_-	L-threonine 3-dehydrogenase	NA	NA	NA	NA	NA
WP_061480604.1|902023_904186_+	S46 family peptidase	NA	NA	NA	NA	NA
WP_154350280.1|904312_904936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_134968340.1|905163_905808_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_154350281.1|905849_907121_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_154350282.1|907201_908248_+	sporulation protein	NA	NA	NA	NA	NA
WP_061479936.1|908294_909074_+	CvpA family protein	NA	NA	NA	NA	NA
WP_049414284.1|909104_910571_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	39.4	6.3e-86
WP_111200540.1|910580_911405_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_154350283.1|911470_912928_-	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
WP_061479939.1|913153_914407_+	peptidyl-Asp metalloendopeptidase	NA	NA	NA	NA	NA
WP_154350284.1|914461_915208_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_061479941.1|915300_915840_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_154350285.1|915820_916966_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_061479942.1|917136_920061_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.9	5.4e-28
WP_005415458.1|920382_921909_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_134968698.1|922047_924135_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_061479944.1|924139_925471_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	33.2	2.5e-28
WP_005408258.1|925577_926267_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	34.7	2.6e-34
WP_061479945.1|926383_928030_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_004154541.1|928172_928463_+	glutaredoxin 3	NA	A0A2L0UZG6	Agrobacterium_phage	43.2	2.0e-07
WP_004154542.1|928459_928852_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_012479261.1|929170_930175_+	isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_154350286.1|930381_931125_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_061479947.1|931178_932087_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154350287.1|932168_933032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061479949.1|934397_934706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_134968738.1|935120_936416_+	trigger factor	NA	NA	NA	NA	NA
WP_004146318.1|936492_937119_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.4	7.7e-57
WP_004154600.1|937245_938535_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.0	2.9e-135
WP_154350288.1|938678_941129_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	51.7	1.5e-220
WP_005408270.1|941348_941621_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	62.9	4.5e-22
WP_154350289.1|942498_944454_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_154350045.1|944557_945520_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_154350290.1|945834_947037_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
946708:946722	attL	CTTGCGCAGCTCTTC	NA	NA	NA	NA
WP_154350291.1|947033_947798_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_061479955.1|947809_948454_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_005408275.1|948466_948919_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	53.4	1.0e-42
WP_014036152.1|948923_949655_+	DNA polymerase III subunit epsilon	NA	A2I2Z6	Vibrio_virus	29.4	2.0e-08
WP_005415481.1|949717_950422_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_065427648.1|950757_952209_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_049397076.1|953830_955030_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_061479957.1|956305_956710_+	hypothetical protein	NA	A0A1C9C5K8	Heterosigma_akashiwo_virus	34.6	1.7e-17
WP_061479958.1|956728_957775_-	glycosyltransferase family 9 protein	NA	NA	NA	NA	NA
WP_061479959.1|957795_958545_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
WP_154350292.1|958544_959312_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005415486.1|959859_960177_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA	NA
WP_154350293.1|960536_971426_+	transporter	NA	NA	NA	NA	NA
WP_061480527.1|971483_971927_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_072168252.1|972090_972465_+	DUF3592 domain-containing protein	NA	NA	NA	NA	NA
WP_154350294.1|972917_973502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154350295.1|973498_974419_+	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
WP_154351697.1|974856_975594_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_154350296.1|975664_976606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154350297.1|976706_978104_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A059XK29	uncultured_phage	22.4	2.8e-06
979792:979806	attR	GAAGAGCTGCGCAAG	NA	NA	NA	NA
>prophage 3
NZ_CP040433	Stenotrophomonas maltophilia strain SKK55 chromosome, complete genome	4675446	2322707	2329878	4675446		Stenotrophomonas_phage(83.33%)	10	NA	NA
WP_099562425.1|2322707_2323088_+	hypothetical protein	NA	B1NI82	Stenotrophomonas_phage	88.1	5.0e-59
WP_154350800.1|2323650_2324337_-	conjugal transfer protein	NA	A0A1D6ZIU7	Xanthomonas_phage	54.2	1.8e-54
WP_154350801.1|2324333_2325518_-	zonular occludens toxin family protein	NA	B1NI81	Stenotrophomonas_phage	36.7	9.4e-56
WP_154350802.1|2325514_2325835_-	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
WP_154350803.1|2325834_2326878_-	hypothetical protein	NA	S0F309	Stenotrophomonas_phage	44.4	8.3e-48
WP_154350804.1|2327367_2327610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154350805.1|2327851_2328148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154350806.1|2328960_2329131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154350807.1|2329127_2329367_-	hypothetical protein	NA	S0F3S0	Stenotrophomonas_phage	51.9	2.6e-05
WP_154350808.1|2329500_2329878_+	helix-turn-helix domain-containing protein	NA	B1NI83	Stenotrophomonas_phage	44.4	1.7e-14
