assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	1	1163557-1163687	1,1	PILER-CR,CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	GGTGGGTGCCGACCGTTGGTCGGCACTGA,GGTGGGTGCCGACCGTTGGTCGGCAC	29,26	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA,NA|89aa|down_2|NZ_CP040432.1_1165277_1165544_-	NA|328aa|up_9|NZ_CP040432.1_1155434_1156418_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|300aa|up_8|NZ_CP040432.1_1156473_1157373_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|70aa|up_7|NZ_CP040432.1_1157466_1157676_+	pfam14117, DUF4287, Domain of unknown function (DUF4287)	NA|150aa|up_6|NZ_CP040432.1_1157772_1158222_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|236aa|up_5|NZ_CP040432.1_1158315_1159023_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_4|NZ_CP040432.1_1159108_1159654_-	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	NA|596aa|up_3|NZ_CP040432.1_1159650_1161438_-	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|189aa|up_2|NZ_CP040432.1_1161529_1162096_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|165aa|up_1|NZ_CP040432.1_1162088_1162583_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|317aa|up_0|NZ_CP040432.1_1162598_1163549_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|164aa|down_0|NZ_CP040432.1_1163797_1164289_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|266aa|down_1|NZ_CP040432.1_1164409_1165207_-	COG4099, COG4099, Predicted peptidase [General function prediction only]	NA|89aa|down_2|NZ_CP040432.1_1165277_1165544_-	NA	NA|454aa|down_3|NZ_CP040432.1_1165605_1166967_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|590aa|down_4|NZ_CP040432.1_1167147_1168917_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|90aa|down_5|NZ_CP040432.1_1168919_1169189_-	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family	NA|131aa|down_6|NZ_CP040432.1_1169181_1169574_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|295aa|down_7|NZ_CP040432.1_1170126_1171011_-	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|down_8|NZ_CP040432.1_1171039_1171990_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|151aa|down_9|NZ_CP040432.1_1171986_1172439_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	2	1538616-1538708	2	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	TTGCCGGCCAGCGGCTGGCACTACCGAC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|223aa|up_3|NZ_CP040432.1_1536438_1537107_+,NA|295aa|down_0|NZ_CP040432.1_1538747_1539632_-,NA|120aa|down_6|NZ_CP040432.1_1544693_1545053_-	NA|376aa|up_9|NZ_CP040432.1_1529860_1530988_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|396aa|up_8|NZ_CP040432.1_1530984_1532172_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|338aa|up_7|NZ_CP040432.1_1532156_1533170_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|467aa|up_6|NZ_CP040432.1_1533162_1534563_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|298aa|up_5|NZ_CP040432.1_1534641_1535535_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|207aa|up_4|NZ_CP040432.1_1535642_1536263_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|223aa|up_3|NZ_CP040432.1_1536438_1537107_+	NA	NA|263aa|up_2|NZ_CP040432.1_1537103_1537892_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|71aa|up_1|NZ_CP040432.1_1537896_1538109_-	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|120aa|up_0|NZ_CP040432.1_1538177_1538537_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|295aa|down_0|NZ_CP040432.1_1538747_1539632_-	NA	NA|355aa|down_1|NZ_CP040432.1_1539635_1540700_-	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NZ_CP040432.1_1540729_1542130_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|239aa|down_3|NZ_CP040432.1_1542194_1542911_-	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily	NA|401aa|down_4|NZ_CP040432.1_1543085_1544288_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|133aa|down_5|NZ_CP040432.1_1544298_1544697_-	pfam00892, EamA, EamA-like transporter family	NA|120aa|down_6|NZ_CP040432.1_1544693_1545053_-	NA	NA|279aa|down_7|NZ_CP040432.1_1545054_1545891_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|460aa|down_8|NZ_CP040432.1_1545971_1547351_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|228aa|down_9|NZ_CP040432.1_1547347_1548031_-	PRK10643, PRK10643, two-component system response regulator PmrA
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	3	2442770-2442891	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	GTGCTCGCGGTCATCCACGCACAGCGTGGATCTACTG	37	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|113aa|up_4|NZ_CP040432.1_2434168_2434507_+,NA|155aa|down_0|NZ_CP040432.1_2443525_2443990_-,NA|72aa|down_1|NZ_CP040432.1_2444145_2444361_-,NA|158aa|down_6|NZ_CP040432.1_2448033_2448507_-	NA|136aa|up_9|NZ_CP040432.1_2431022_2431430_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NZ_CP040432.1_2431433_2431829_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NZ_CP040432.1_2431978_2432923_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|219aa|up_6|NZ_CP040432.1_2433134_2433791_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NZ_CP040432.1_2433866_2434172_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NZ_CP040432.1_2434168_2434507_+	NA	NA|407aa|up_3|NZ_CP040432.1_2434598_2435819_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|591aa|up_2|NZ_CP040432.1_2435912_2437685_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NZ_CP040432.1_2437689_2439792_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_0|NZ_CP040432.1_2439923_2442683_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|155aa|down_0|NZ_CP040432.1_2443525_2443990_-	NA	NA|72aa|down_1|NZ_CP040432.1_2444145_2444361_-	NA	NA|397aa|down_2|NZ_CP040432.1_2444465_2445656_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_3|NZ_CP040432.1_2445820_2446435_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_4|NZ_CP040432.1_2446431_2447574_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_5|NZ_CP040432.1_2447570_2448032_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|158aa|down_6|NZ_CP040432.1_2448033_2448507_-	NA	NA|109aa|down_7|NZ_CP040432.1_2448619_2448946_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_8|NZ_CP040432.1_2449026_2449839_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_9|NZ_CP040432.1_2449977_2452263_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	4	2455759-2455833	4	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	ACCTTGGTTGGCACGCCTTTTGGCG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|158aa|up_8|NZ_CP040432.1_2448033_2448507_-,NA|128aa|up_4|NZ_CP040432.1_2452338_2452722_-,NA|91aa|up_3|NZ_CP040432.1_2452850_2453123_-,NA|423aa|up_0|NZ_CP040432.1_2454412_2455681_+,NA|391aa|down_6|NZ_CP040432.1_2465254_2466427_-,NA|54aa|down_8|NZ_CP040432.1_2468016_2468178_+	NA|154aa|up_9|NZ_CP040432.1_2447570_2448032_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|158aa|up_8|NZ_CP040432.1_2448033_2448507_-	NA	NA|109aa|up_7|NZ_CP040432.1_2448619_2448946_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|up_6|NZ_CP040432.1_2449026_2449839_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|up_5|NZ_CP040432.1_2449977_2452263_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|128aa|up_4|NZ_CP040432.1_2452338_2452722_-	NA	NA|91aa|up_3|NZ_CP040432.1_2452850_2453123_-	NA	NA|73aa|up_2|NZ_CP040432.1_2453294_2453513_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|247aa|up_1|NZ_CP040432.1_2453599_2454340_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|423aa|up_0|NZ_CP040432.1_2454412_2455681_+	NA	NA|375aa|down_0|NZ_CP040432.1_2455858_2456983_-	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition	NA|507aa|down_1|NZ_CP040432.1_2457151_2458672_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|324aa|down_2|NZ_CP040432.1_2458753_2459725_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|787aa|down_3|NZ_CP040432.1_2459957_2462318_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|648aa|down_4|NZ_CP040432.1_2462356_2464300_+	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857)	NA|213aa|down_5|NZ_CP040432.1_2464411_2465050_+	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|391aa|down_6|NZ_CP040432.1_2465254_2466427_-	NA	NA|454aa|down_7|NZ_CP040432.1_2466631_2467993_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|54aa|down_8|NZ_CP040432.1_2468016_2468178_+	NA	NA|121aa|down_9|NZ_CP040432.1_2468191_2468554_+	pfam05656, DUF805, Protein of unknown function (DUF805)
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	5	2465136-2465246	5	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	GGTGGGTGTCAACCTTGGTTGACACGCTTT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|91aa|up_9|NZ_CP040432.1_2452850_2453123_-,NA|423aa|up_6|NZ_CP040432.1_2454412_2455681_+,NA|391aa|down_0|NZ_CP040432.1_2465254_2466427_-,NA|54aa|down_2|NZ_CP040432.1_2468016_2468178_+,NA|125aa|down_4|NZ_CP040432.1_2468627_2469002_-	NA|91aa|up_9|NZ_CP040432.1_2452850_2453123_-	NA	NA|73aa|up_8|NZ_CP040432.1_2453294_2453513_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|247aa|up_7|NZ_CP040432.1_2453599_2454340_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|423aa|up_6|NZ_CP040432.1_2454412_2455681_+	NA	NA|375aa|up_5|NZ_CP040432.1_2455858_2456983_-	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition	NA|507aa|up_4|NZ_CP040432.1_2457151_2458672_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|324aa|up_3|NZ_CP040432.1_2458753_2459725_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|787aa|up_2|NZ_CP040432.1_2459957_2462318_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|648aa|up_1|NZ_CP040432.1_2462356_2464300_+	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857)	NA|213aa|up_0|NZ_CP040432.1_2464411_2465050_+	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|391aa|down_0|NZ_CP040432.1_2465254_2466427_-	NA	NA|454aa|down_1|NZ_CP040432.1_2466631_2467993_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|54aa|down_2|NZ_CP040432.1_2468016_2468178_+	NA	NA|121aa|down_3|NZ_CP040432.1_2468191_2468554_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|125aa|down_4|NZ_CP040432.1_2468627_2469002_-	NA	NA|343aa|down_5|NZ_CP040432.1_2469284_2470313_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|459aa|down_6|NZ_CP040432.1_2470435_2471812_+	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|349aa|down_7|NZ_CP040432.1_2471863_2472910_+	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|348aa|down_8|NZ_CP040432.1_2472906_2473950_+	pfam01032, FecCD, FecCD transport family	NA|254aa|down_9|NZ_CP040432.1_2473946_2474708_+	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	6	2676718-2676830	6	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	GGTAGATGCCCACCTTGGTGGGCACCGATG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|204aa|up_8|NZ_CP040432.1_2666639_2667251_+,NA|100aa|up_1|NZ_CP040432.1_2674540_2674840_+,NA	NA|394aa|up_9|NZ_CP040432.1_2665263_2666445_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|204aa|up_8|NZ_CP040432.1_2666639_2667251_+	NA	NA|260aa|up_7|NZ_CP040432.1_2667247_2668027_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|359aa|up_6|NZ_CP040432.1_2668030_2669107_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|309aa|up_5|NZ_CP040432.1_2669307_2670234_+	pfam13748, ABC_membrane_3, ABC transporter transmembrane region	NA|205aa|up_4|NZ_CP040432.1_2670494_2671109_-	PRK13756, PRK13756, TetR family transcriptional regulator	NA|279aa|up_3|NZ_CP040432.1_2671278_2672115_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|726aa|up_2|NZ_CP040432.1_2672310_2674488_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|100aa|up_1|NZ_CP040432.1_2674540_2674840_+	NA	NA|537aa|up_0|NZ_CP040432.1_2674836_2676447_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|363aa|down_0|NZ_CP040432.1_2676894_2677983_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|322aa|down_1|NZ_CP040432.1_2678042_2679008_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|238aa|down_2|NZ_CP040432.1_2679302_2680016_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|329aa|down_3|NZ_CP040432.1_2680047_2681034_-	pfam00419, Fimbrial, Fimbrial protein	NA|182aa|down_4|NZ_CP040432.1_2682165_2682711_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|262aa|down_5|NZ_CP040432.1_2682947_2683733_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|343aa|down_6|NZ_CP040432.1_2683861_2684890_-	pfam00419, Fimbrial, Fimbrial protein	NA|859aa|down_7|NZ_CP040432.1_2684906_2687483_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|248aa|down_8|NZ_CP040432.1_2687572_2688316_-	PRK09926, PRK09926, fimbrial chaperone	NA|189aa|down_9|NZ_CP040432.1_2688367_2688934_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	7	2712170-2712266	7	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	GTAGCGCCGGCCGCTGGCCGGCAAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|413aa|up_6|NZ_CP040432.1_2702240_2703479_-,NA|165aa|up_4|NZ_CP040432.1_2706076_2706571_-,NA|100aa|up_1|NZ_CP040432.1_2708282_2708582_+,NA|89aa|down_4|NZ_CP040432.1_2715819_2716086_-	NA|142aa|up_9|NZ_CP040432.1_2699910_2700336_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|222aa|up_8|NZ_CP040432.1_2700459_2701125_-	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional	NA|316aa|up_7|NZ_CP040432.1_2701239_2702187_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|413aa|up_6|NZ_CP040432.1_2702240_2703479_-	NA	NA|849aa|up_5|NZ_CP040432.1_2703460_2706007_-	pfam16967, TcfC, E-set like domain	NA|165aa|up_4|NZ_CP040432.1_2706076_2706571_-	NA	NA|245aa|up_3|NZ_CP040432.1_2706681_2707416_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|100aa|up_2|NZ_CP040432.1_2707689_2707989_+	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein	NA|100aa|up_1|NZ_CP040432.1_2708282_2708582_+	NA	NA|920aa|up_0|NZ_CP040432.1_2708644_2711404_+	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA	NA|352aa|down_0|NZ_CP040432.1_2712397_2713453_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|214aa|down_1|NZ_CP040432.1_2713445_2714087_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|182aa|down_2|NZ_CP040432.1_2714083_2714629_+	pfam08002, DUF1697, Protein of unknown function (DUF1697)	NA|391aa|down_3|NZ_CP040432.1_2714637_2715810_-	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|89aa|down_4|NZ_CP040432.1_2715819_2716086_-	NA	NA|175aa|down_5|NZ_CP040432.1_2716289_2716814_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|284aa|down_6|NZ_CP040432.1_2716810_2717662_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|810aa|down_7|NZ_CP040432.1_2717733_2720163_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|291aa|down_8|NZ_CP040432.1_2720258_2721131_+	cd16289, L1_POM-1-like_MBL-B3, Stenotrophomonas maltophilia L1, Pseudomonas otitidis POM-1 and related metallo-beta-lactamases, subclass B3; MBL-fold metallo-hydrolase domain	NA|180aa|down_9|NZ_CP040432.1_2721365_2721905_-	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	8	3179489-3179588	8	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	TGCCGACCAAGGTCGGCACCTACC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|118aa|up_9|NZ_CP040432.1_3170196_3170550_-,NA|244aa|up_8|NZ_CP040432.1_3170655_3171387_-,NA	NA|118aa|up_9|NZ_CP040432.1_3170196_3170550_-	NA	NA|244aa|up_8|NZ_CP040432.1_3170655_3171387_-	NA	NA|508aa|up_7|NZ_CP040432.1_3171386_3172910_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|357aa|up_6|NZ_CP040432.1_3173206_3174277_+	pfam14025, DUF4241, Protein of unknown function (DUF4241)	NA|331aa|up_5|NZ_CP040432.1_3174358_3175351_-	cd08473, PBP2_CrgA_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|196aa|up_4|NZ_CP040432.1_3175478_3176066_+	PRK00170, PRK00170, azoreductase; Reviewed	NA|119aa|up_3|NZ_CP040432.1_3176297_3176654_+	cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins	NA|427aa|up_2|NZ_CP040432.1_3176696_3177977_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|213aa|up_1|NZ_CP040432.1_3178090_3178729_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|191aa|up_0|NZ_CP040432.1_3178848_3179421_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|436aa|down_0|NZ_CP040432.1_3179713_3181021_-	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|400aa|down_1|NZ_CP040432.1_3181097_3182297_-	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|362aa|down_2|NZ_CP040432.1_3182348_3183434_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|269aa|down_3|NZ_CP040432.1_3183614_3184421_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|92aa|down_4|NZ_CP040432.1_3184546_3184822_+	pfam09650, PHA_gran_rgn, Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)	NA|164aa|down_5|NZ_CP040432.1_3184902_3185394_+	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin)	NA|337aa|down_6|NZ_CP040432.1_3185630_3186641_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|243aa|down_7|NZ_CP040432.1_3186798_3187527_-	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial	NA|457aa|down_8|NZ_CP040432.1_3187555_3188926_-	PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated	NA|408aa|down_9|NZ_CP040432.1_3188993_3190217_+	PRK09356, PRK09356, imidazolonepropionase; Validated
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	9	3510792-3510895	9	CRISPRCasFinder	no	csa3	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Type I-A	AGGACCAACGGTCCTCACCCACAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|99aa|up_4|NZ_CP040432.1_3506240_3506537_+,NA|88aa|up_3|NZ_CP040432.1_3506536_3506800_+,NA	NA|332aa|up_9|NZ_CP040432.1_3501277_3502273_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|120aa|up_8|NZ_CP040432.1_3502465_3502825_-	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|66aa|up_7|NZ_CP040432.1_3502836_3503034_-	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|181aa|up_6|NZ_CP040432.1_3503317_3503860_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|634aa|up_5|NZ_CP040432.1_3503909_3505811_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|99aa|up_4|NZ_CP040432.1_3506240_3506537_+	NA	NA|88aa|up_3|NZ_CP040432.1_3506536_3506800_+	NA	NA|520aa|up_2|NZ_CP040432.1_3506810_3508370_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|397aa|up_1|NZ_CP040432.1_3508406_3509597_-	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|345aa|up_0|NZ_CP040432.1_3509751_3510786_+	sd00006, TPR, Tetratricopeptide repeat	NA|703aa|down_0|NZ_CP040432.1_3510913_3513022_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|87aa|down_1|NZ_CP040432.1_3513173_3513434_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|303aa|down_2|NZ_CP040432.1_3513607_3514516_-	PRK04642, truB, tRNA pseudouridine synthase B; Provisional	NA|128aa|down_3|NZ_CP040432.1_3514625_3515009_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|884aa|down_4|NZ_CP040432.1_3515135_3517787_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|504aa|down_5|NZ_CP040432.1_3517879_3519391_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|197aa|down_6|NZ_CP040432.1_3519395_3519986_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|487aa|down_7|NZ_CP040432.1_3520750_3522211_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|503aa|down_8|NZ_CP040432.1_3522226_3523735_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|725aa|down_9|NZ_CP040432.1_3523758_3525933_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	10	3875845-3875943	10	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	GTGCGAACCAACGGTTCGCACCCACCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|113aa|up_1|NZ_CP040432.1_3874191_3874530_+,NA	NA|601aa|up_9|NZ_CP040432.1_3866759_3868562_+	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|342aa|up_8|NZ_CP040432.1_3868558_3869584_+	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|171aa|up_7|NZ_CP040432.1_3869665_3870178_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|107aa|up_6|NZ_CP040432.1_3870290_3870611_-	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|up_5|NZ_CP040432.1_3870760_3871528_+	pfam02517, Abi, CAAX protease self-immunity	NA|142aa|up_4|NZ_CP040432.1_3871622_3872048_+	pfam00072, Response_reg, Response regulator receiver domain	NA|313aa|up_3|NZ_CP040432.1_3872085_3873024_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|284aa|up_2|NZ_CP040432.1_3873108_3873960_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|113aa|up_1|NZ_CP040432.1_3874191_3874530_+	NA	NA|319aa|up_0|NZ_CP040432.1_3874859_3875816_+	pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268)	NA|222aa|down_0|NZ_CP040432.1_3875955_3876621_-	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|234aa|down_1|NZ_CP040432.1_3876698_3877400_-	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|273aa|down_2|NZ_CP040432.1_3877637_3878456_-	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]	NA|173aa|down_3|NZ_CP040432.1_3878459_3878978_-	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|440aa|down_4|NZ_CP040432.1_3879042_3880362_-	PRK04922, tolB, Tol-Pal system beta propeller repeat protein TolB	NA|352aa|down_5|NZ_CP040432.1_3880659_3881715_-	TIGR02794, Protein_TolA, TolA protein	NA|143aa|down_6|NZ_CP040432.1_3881704_3882133_-	TIGR02801, Protein_TolR, TolR protein	NA|260aa|down_7|NZ_CP040432.1_3882157_3882937_-	TIGR02796, Protein_TolQ, TolQ protein	NA|144aa|down_8|NZ_CP040432.1_3882947_3883379_-	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|347aa|down_9|NZ_CP040432.1_3883368_3884409_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	11	4033458-4033611	11	CRISPRCasFinder	no	cas3	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Unclear	TTGGTGGGTGCGGACCGTTGGTCCGCACGGTGTTTCAGAGATCCGGA	47	0	0	NA	NA	NA	1	1	Unclear	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|215aa|up_0|NZ_CP040432.1_4032798_4033443_+,NA|250aa|down_0|NZ_CP040432.1_4033669_4034419_-	NA|150aa|up_9|NZ_CP040432.1_4022098_4022548_-	pfam14316, DUF4381, Domain of unknown function (DUF4381)	NA|310aa|up_8|NZ_CP040432.1_4022544_4023474_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|342aa|up_7|NZ_CP040432.1_4023482_4024508_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|658aa|up_6|NZ_CP040432.1_4024698_4026672_-	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ	NA|168aa|up_5|NZ_CP040432.1_4026693_4027197_-	pfam04351, PilP, Pilus assembly protein, PilP	NA|219aa|up_4|NZ_CP040432.1_4027223_4027880_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|294aa|up_3|NZ_CP040432.1_4027876_4028758_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|353aa|up_2|NZ_CP040432.1_4028757_4029816_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_1|NZ_CP040432.1_4030035_4032459_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|up_0|NZ_CP040432.1_4032798_4033443_+	NA	NA|250aa|down_0|NZ_CP040432.1_4033669_4034419_-	NA	NA|1527aa|down_1|NZ_CP040432.1_4034488_4039069_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|down_2|NZ_CP040432.1_4039130_4039838_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|378aa|down_3|NZ_CP040432.1_4039856_4040990_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|911aa|down_4|NZ_CP040432.1_4040986_4043719_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|167aa|down_5|NZ_CP040432.1_4043780_4044281_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|255aa|down_6|NZ_CP040432.1_4044613_4045378_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|258aa|down_7|NZ_CP040432.1_4045471_4046245_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|426aa|down_8|NZ_CP040432.1_4046362_4047640_-	PRK05614, gltA, citrate synthase	NA|81aa|down_9|NZ_CP040432.1_4047936_4048179_-	PRK01678, rpmE2, type B 50S ribosomal protein L31
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	12	4239647-4239726	12	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	CGACCAAGGTCGACACCTACCAGAGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|201aa|up_7|NZ_CP040432.1_4232716_4233319_+,NA|79aa|up_4|NZ_CP040432.1_4235978_4236215_+,NA|112aa|up_1|NZ_CP040432.1_4238102_4238438_-,NA	NA|713aa|up_9|NZ_CP040432.1_4227466_4229605_+	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional	NA|954aa|up_8|NZ_CP040432.1_4229753_4232615_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|201aa|up_7|NZ_CP040432.1_4232716_4233319_+	NA	NA|136aa|up_6|NZ_CP040432.1_4233328_4233736_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|662aa|up_5|NZ_CP040432.1_4233887_4235873_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|79aa|up_4|NZ_CP040432.1_4235978_4236215_+	NA	NA|407aa|up_3|NZ_CP040432.1_4236328_4237549_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|145aa|up_2|NZ_CP040432.1_4237618_4238053_-	pfam07179, SseB, SseB protein N-terminal domain	NA|112aa|up_1|NZ_CP040432.1_4238102_4238438_-	NA	NA|388aa|up_0|NZ_CP040432.1_4238441_4239605_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|1010aa|down_0|NZ_CP040432.1_4239757_4242787_-	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|356aa|down_1|NZ_CP040432.1_4243096_4244164_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|down_2|NZ_CP040432.1_4244163_4245312_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|343aa|down_3|NZ_CP040432.1_4245311_4246340_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|356aa|down_4|NZ_CP040432.1_4246347_4247415_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|430aa|down_5|NZ_CP040432.1_4247454_4248744_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|down_6|NZ_CP040432.1_4249120_4250140_+	PRK12408, PRK12408, glucokinase; Provisional	NA|903aa|down_7|NZ_CP040432.1_4250283_4252992_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|786aa|down_8|NZ_CP040432.1_4253103_4255461_+	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|131aa|down_9|NZ_CP040432.1_4255673_4256066_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	13	4596719-4596829	13	CRISPRCasFinder	no	PD-DExK	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Unclear	GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|68aa|up_8|NZ_CP040432.1_4586814_4587018_+,NA|218aa|down_8|NZ_CP040432.1_4604896_4605550_-,NA|180aa|down_9|NZ_CP040432.1_4605675_4606215_+	NA|492aa|up_9|NZ_CP040432.1_4584677_4586153_-	PRK13565, PRK13565, anthranilate synthase component I; Provisional	NA|68aa|up_8|NZ_CP040432.1_4586814_4587018_+	NA	NA|715aa|up_7|NZ_CP040432.1_4587375_4589520_+	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|415aa|up_6|NZ_CP040432.1_4589516_4590761_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|374aa|up_5|NZ_CP040432.1_4591219_4592340_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|322aa|up_4|NZ_CP040432.1_4592782_4593748_-	PRK13054, PRK13054, lipid kinase; Reviewed	NA|161aa|up_3|NZ_CP040432.1_4594030_4594513_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_2|NZ_CP040432.1_4594571_4595246_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_1|NZ_CP040432.1_4595276_4595606_-	PRK09430, djlA, co-chaperone DjlA	NA|311aa|up_0|NZ_CP040432.1_4595741_4596674_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|down_0|NZ_CP040432.1_4596893_4597379_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|944aa|down_1|NZ_CP040432.1_4597712_4600544_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|down_2|NZ_CP040432.1_4600543_4600936_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|down_3|NZ_CP040432.1_4600932_4602468_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|down_4|NZ_CP040432.1_4602464_4602971_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|down_5|NZ_CP040432.1_4602967_4603252_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|down_6|NZ_CP040432.1_4603248_4603638_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|down_7|NZ_CP040432.1_4603857_4604823_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|218aa|down_8|NZ_CP040432.1_4604896_4605550_-	NA	NA|180aa|down_9|NZ_CP040432.1_4605675_4606215_+	NA
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	14	4603640-4603738	14	CRISPRCasFinder	no	PD-DExK,WYL	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Unclear	CCCGGTAGAGGCCGACCTTGGCCGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA,NA|218aa|down_1|NZ_CP040432.1_4604896_4605550_-,NA|180aa|down_2|NZ_CP040432.1_4605675_4606215_+,NA|380aa|down_7|NZ_CP040432.1_4610871_4612011_-	NA|225aa|up_9|NZ_CP040432.1_4594571_4595246_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_8|NZ_CP040432.1_4595276_4595606_-	PRK09430, djlA, co-chaperone DjlA	NA|311aa|up_7|NZ_CP040432.1_4595741_4596674_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|up_6|NZ_CP040432.1_4596893_4597379_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|944aa|up_5|NZ_CP040432.1_4597712_4600544_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|up_4|NZ_CP040432.1_4600543_4600936_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|up_3|NZ_CP040432.1_4600932_4602468_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|up_2|NZ_CP040432.1_4602464_4602971_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|up_1|NZ_CP040432.1_4602967_4603252_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|up_0|NZ_CP040432.1_4603248_4603638_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|down_0|NZ_CP040432.1_4603857_4604823_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|218aa|down_1|NZ_CP040432.1_4604896_4605550_-	NA	NA|180aa|down_2|NZ_CP040432.1_4605675_4606215_+	NA	NA|433aa|down_3|NZ_CP040432.1_4606297_4607596_-	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	NA|357aa|down_4|NZ_CP040432.1_4607681_4608752_-	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|186aa|down_5|NZ_CP040432.1_4608860_4609418_+	COG1846, MarR, Transcriptional regulators [Transcription]	PD-DExK|352aa|down_6|NZ_CP040432.1_4609797_4610853_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	NA|380aa|down_7|NZ_CP040432.1_4610871_4612011_-	NA	NA|200aa|down_8|NZ_CP040432.1_4612263_4612863_-	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|500aa|down_9|NZ_CP040432.1_4612882_4614382_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
GCF_009676445.1_ASM967644v1	NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	15	4934094-4934196	15	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,PD-DExK,DinG	Orphan	GTTGCCAACCTTGGTTGGCGCCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,PD-DExK,DinG	NA|304aa|up_7|NZ_CP040432.1_4926122_4927034_+,NA	NA|612aa|up_9|NZ_CP040432.1_4923517_4925353_+	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|249aa|up_8|NZ_CP040432.1_4925324_4926071_+	PRK09065, PRK09065, glutamine amidotransferase; Provisional	NA|304aa|up_7|NZ_CP040432.1_4926122_4927034_+	NA	NA|250aa|up_6|NZ_CP040432.1_4927125_4927875_-	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|166aa|up_5|NZ_CP040432.1_4927871_4928369_-	PRK04654, PRK04654, sec-independent translocase; Provisional	NA|76aa|up_4|NZ_CP040432.1_4928384_4928612_-	PRK04561, tatA, twin arginine translocase protein A; Provisional	NA|300aa|up_3|NZ_CP040432.1_4928687_4929587_-	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|321aa|up_2|NZ_CP040432.1_4929752_4930715_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|285aa|up_1|NZ_CP040432.1_4930711_4931566_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|702aa|up_0|NZ_CP040432.1_4931856_4933962_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|396aa|down_0|NZ_CP040432.1_4945901_4947089_+	pfam03594, BenE, Benzoate membrane transport protein	NA|258aa|down_1|NZ_CP040432.1_4947095_4947869_-	pfam14237, DUF4339, Domain of unknown function (DUF4339)	NA|289aa|down_2|NZ_CP040432.1_4947919_4948786_-	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|423aa|down_3|NZ_CP040432.1_4948826_4950095_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|325aa|down_4|NZ_CP040432.1_4950179_4951154_-	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase	NA|424aa|down_5|NZ_CP040432.1_4951150_4952422_-	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|427aa|down_6|NZ_CP040432.1_4952572_4953853_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|131aa|down_7|NZ_CP040432.1_4953856_4954249_-	PRK04233, PRK04233, hypothetical protein; Provisional	NA|260aa|down_8|NZ_CP040432.1_4954352_4955132_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|1127aa|down_9|NZ_CP040432.1_4955228_4958609_-	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]
