The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	5007582	596515	603952	5007582		Enterobacteria_phage(42.86%)	7	NA	NA
WP_004141804.1|596515_597571_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.8	1.7e-80
WP_004141805.1|597585_598473_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.5	1.7e-97
WP_004141806.1|598469_599027_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.1	1.2e-45
WP_154354606.1|599023_599917_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	36.9	3.7e-28
WP_004141875.1|599999_601403_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	27.9	5.0e-40
WP_004141878.1|601414_602761_-	phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.3	6.5e-29
WP_012509987.1|602995_603952_+	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	48.1	1.5e-88
>prophage 2
NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	5007582	1082157	1088933	5007582		Acinetobacter_phage(50.0%)	8	NA	NA
WP_004146768.1|1082157_1083183_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	49.6	6.8e-79
WP_004146769.1|1083213_1083792_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	38.0	2.1e-29
WP_004146770.1|1083818_1084394_+	TerD family protein	NA	A0A2I7QY15	Vibrio_phage	33.5	5.4e-17
WP_141650943.1|1084464_1085181_+	TIGR00266 family protein	NA	NA	NA	NA	NA
WP_032969047.1|1085248_1085833_+	TerD family protein	NA	A0A2P1N0C0	Streptomyces_phage	31.4	3.3e-09
WP_154354631.1|1085945_1086992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004146827.1|1086988_1088200_+	hypothetical protein	NA	A0A172Q0Y1	Acinetobacter_phage	29.4	1.2e-18
WP_141650944.1|1088180_1088933_+	haloacid dehalogenase	NA	A0A172Q0Q4	Acinetobacter_phage	26.7	4.3e-14
>prophage 3
NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	5007582	1834569	1874078	5007582	integrase,portal,terminase	Stenotrophomonas_phage(91.18%)	45	1834361:1834408	1875001:1875048
1834361:1834408	attL	CGGATTGCAAATCCGTTTACAGCGGTTCGATTCCGCTTGAGGCCTCCA	NA	NA	NA	NA
WP_004152583.1|1834569_1835685_+|integrase	site-specific integrase	integrase	A0A1L7DQ84	Ralstonia_phage	28.6	1.6e-20
WP_004152584.1|1835672_1836023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141650990.1|1836408_1836738_-	hypothetical protein	NA	A0A1I9KFB7	Aeromonas_phage	47.1	2.7e-13
WP_004152585.1|1836730_1836964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152587.1|1838008_1838248_-	hypothetical protein	NA	B7SYG4	Stenotrophomonas_phage	97.5	4.4e-37
WP_154354672.1|1838247_1840203_-	DNA methyltransferase	NA	Q5QF27	Pseudomonas_virus	51.8	1.4e-165
WP_004152663.1|1840195_1840894_-	hypothetical protein	NA	B7SYG5	Stenotrophomonas_phage	92.9	1.6e-119
WP_004152665.1|1840890_1841283_-	hypothetical protein	NA	B7SYG6	Stenotrophomonas_phage	90.8	6.5e-62
WP_004152666.1|1841290_1841779_-	hypothetical protein	NA	B7SYG7	Stenotrophomonas_phage	95.7	3.4e-84
WP_032969466.1|1841775_1842015_-	hypothetical protein	NA	B7SYG8	Stenotrophomonas_phage	83.5	1.7e-33
WP_004152667.1|1842011_1842338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141650991.1|1842334_1842571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152669.1|1842621_1842942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152670.1|1843090_1843456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032969469.1|1843452_1843677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154354673.1|1843923_1844463_+	DUF4124 domain-containing protein	NA	B7SYH2	Stenotrophomonas_phage	89.4	2.3e-78
WP_032969471.1|1844496_1844874_-	hypothetical protein	NA	B7SYH3	Stenotrophomonas_phage	91.0	1.5e-60
WP_004152723.1|1844788_1845448_-	hypothetical protein	NA	B7SYH4	Stenotrophomonas_phage	87.2	1.3e-99
WP_154354674.1|1845568_1845799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152724.1|1845867_1846398_+	hypothetical protein	NA	B7SYH6	Stenotrophomonas_phage	90.9	1.6e-87
WP_004152725.1|1846806_1849221_+	toprim domain-containing protein	NA	B7SYD0	Stenotrophomonas_phage	97.1	0.0e+00
WP_004152726.1|1849563_1850214_+	hypothetical protein	NA	B7SYD2	Stenotrophomonas_phage	92.6	4.2e-90
WP_004152727.1|1850210_1852136_+|terminase	phage terminase large subunit family protein	terminase	B7SYD3	Stenotrophomonas_phage	98.1	0.0e+00
WP_049442272.1|1852129_1852450_+	hypothetical protein	NA	B7SYD4	Stenotrophomonas_phage	97.1	1.8e-49
WP_015994693.1|1852529_1852745_+	hypothetical protein	NA	B7SYD5	Stenotrophomonas_phage	100.0	7.2e-31
WP_004152728.1|1852746_1854237_+|portal	phage portal protein	portal	B7SYD6	Stenotrophomonas_phage	98.6	6.3e-283
WP_032969476.1|1854233_1856216_+	peptidase S14	NA	B7SYD7	Stenotrophomonas_phage	99.7	0.0e+00
WP_004152730.1|1856238_1856604_+	DUF2190 family protein	NA	B7SYD8	Stenotrophomonas_phage	93.4	4.6e-54
WP_032969477.1|1856683_1856983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004152731.1|1856972_1857548_+	glycoside hydrolase family protein	NA	NA	NA	NA	NA
WP_004152732.1|1857544_1858036_+	hypothetical protein	NA	B7SYE1	Stenotrophomonas_phage	60.7	7.4e-39
WP_004152733.1|1858032_1858356_+	hypothetical protein	NA	B7SYE3	Stenotrophomonas_phage	90.7	2.0e-48
WP_141650995.1|1858411_1858831_+	hypothetical protein	NA	B7SYE4	Stenotrophomonas_phage	95.7	7.9e-66
WP_004152735.1|1858844_1859645_+	hypothetical protein	NA	B7SYE5	Stenotrophomonas_phage	96.2	1.1e-143
WP_141650992.1|1859697_1860366_+	hypothetical protein	NA	B7SYE6	Stenotrophomonas_phage	93.7	1.7e-115
WP_141650996.1|1860730_1864462_+	Laminin subunit alpha-2	NA	B7SYE7	Stenotrophomonas_phage	78.9	0.0e+00
WP_004152738.1|1864458_1864875_+	hypothetical protein	NA	B7SYE8	Stenotrophomonas_phage	73.2	6.9e-54
WP_004152739.1|1864878_1868484_+	hypothetical protein	NA	B7SYE9	Stenotrophomonas_phage	79.2	0.0e+00
WP_004152740.1|1868480_1869470_+	hypothetical protein	NA	B7SYF0	Stenotrophomonas_phage	32.7	1.6e-37
WP_141650993.1|1869474_1869795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141650994.1|1870580_1871606_+	hypothetical protein	NA	B7SYF1	Stenotrophomonas_phage	82.7	1.6e-160
WP_004152742.1|1871595_1871829_+	hypothetical protein	NA	B7SYF2	Stenotrophomonas_phage	87.0	2.9e-33
WP_004152743.1|1871976_1872768_+	DNA adenine methylase	NA	B7SYF3	Stenotrophomonas_phage	98.9	3.5e-155
WP_004152744.1|1872771_1873437_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	95.9	1.0e-120
WP_032969481.1|1873547_1874078_+	hypothetical protein	NA	B7SYF7	Stenotrophomonas_phage	47.9	5.7e-37
1875001:1875048	attR	CGGATTGCAAATCCGTTTACAGCGGTTCGATTCCGCTTGAGGCCTCCA	NA	NA	NA	NA
>prophage 4
NZ_CP040432	Stenotrophomonas maltophilia strain sm-RA9 chromosome, complete genome	5007582	3704787	3773055	5007582	transposase,protease	Thermus_phage(15.38%)	55	NA	NA
WP_012511810.1|3704787_3706323_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	27.9	2.6e-26
WP_154354797.1|3706398_3707280_-	anti-sigma factor	NA	NA	NA	NA	NA
WP_006383094.1|3707276_3707897_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	27.0	1.4e-05
WP_006383095.1|3708131_3710195_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_006383170.1|3710825_3711689_+	pirin family protein	NA	NA	NA	NA	NA
WP_006383172.1|3711810_3712530_+	aquaporin Z	NA	NA	NA	NA	NA
WP_012511813.1|3712726_3713185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006383176.1|3713301_3714153_-	pirin family protein	NA	NA	NA	NA	NA
WP_006383178.1|3714368_3716450_+	carbon starvation protein A	NA	NA	NA	NA	NA
WP_006383180.1|3716449_3716674_+	putative selenoprotein	NA	NA	NA	NA	NA
WP_012510657.1|3717275_3718241_+|transposase	IS110-like element ISStma4 family transposase	transposase	A0A1S7J231	Thermus_phage	35.0	8.5e-31
WP_006383182.1|3718324_3719575_-	DUF819 family protein	NA	NA	NA	NA	NA
WP_154354798.1|3719708_3720098_+	VOC family protein	NA	NA	NA	NA	NA
WP_006383239.1|3720128_3721418_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012511817.1|3721404_3722118_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.9	1.1e-22
WP_154354799.1|3722248_3723952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100435094.1|3724063_3724831_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_006383315.1|3724827_3726477_+	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_006405543.1|3726765_3727980_-|transposase	IS4 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	35.8	5.7e-56
WP_012511821.1|3728435_3730400_+	M2 family metallopeptidase	NA	NA	NA	NA	NA
WP_006383371.1|3730519_3730912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006383411.1|3730981_3731878_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_012511824.1|3732020_3733247_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_012511825.1|3733710_3736578_+	aminomethyl-transferring glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	52.1	3.9e-265
WP_005418291.1|3736678_3737089_-	VOC family protein	NA	NA	NA	NA	NA
WP_006383524.1|3737195_3738563_-	amino acid permease	NA	NA	NA	NA	NA
WP_012511827.1|3738645_3739368_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_006383526.1|3739475_3739862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006383527.1|3739871_3740573_-	BioH protein	NA	NA	NA	NA	NA
WP_006383528.1|3740705_3740993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006383611.1|3741079_3743203_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	68.8	1.3e-07
WP_006383614.1|3743438_3744401_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_006383616.1|3744405_3745080_+	M23 family metallopeptidase	NA	A0A7K9	Microcystis_virus	38.5	6.8e-11
WP_032972091.1|3745015_3745684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006383668.1|3745801_3747094_-	adenylosuccinate synthase	NA	A0A2R8FF47	Brazilian_cedratvirus	38.4	2.0e-75
WP_005410640.1|3747478_3747664_-	DUF2065 family protein	NA	NA	NA	NA	NA
WP_006383787.1|3747731_3748595_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_006383788.1|3748591_3749725_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_006383789.1|3749878_3750874_+	YhdH/YhfP family quinone oxidoreductase	NA	NA	NA	NA	NA
WP_005410644.1|3750962_3751334_+	response regulator	NA	W8CYM9	Bacillus_phage	32.1	6.0e-09
WP_006383827.1|3751497_3752385_-	DnaJ domain-containing protein	NA	F2Y2Y5	Organic_Lake_phycodnavirus	45.2	2.3e-06
WP_006383828.1|3752646_3753129_+	peroxiredoxin	NA	A0A1D8KSL1	Synechococcus_phage	40.0	2.7e-25
WP_006383829.1|3753158_3753734_+	bacterioferritin	NA	NA	NA	NA	NA
WP_100469279.1|3753847_3756229_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_006384029.1|3756293_3761201_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_006384082.1|3761405_3762866_-	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA	NA
WP_006384130.1|3763018_3764197_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA	NA
WP_006384132.1|3764220_3764547_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_006384133.1|3764533_3764791_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_032972125.1|3764891_3767510_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA	NA
WP_006384137.1|3767607_3768765_-	2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_012511842.1|3768801_3769695_-	methylisocitrate lyase	NA	NA	NA	NA	NA
WP_006384210.1|3769848_3771432_+	propionate catabolism operon regulatory protein PrpR	NA	NA	NA	NA	NA
WP_006384211.1|3771506_3771968_-	DoxX family protein	NA	NA	NA	NA	NA
WP_154354800.1|3772089_3773055_-|transposase	IS110-like element ISStma4 family transposase	transposase	A0A1S7J231	Thermus_phage	35.0	1.5e-30
