assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	1	580148-580249	1	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GGTAGGTGCCGACCGTTGGTCGGCA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|88aa|up_3|NZ_CP040431.1_577282_577546_-,NA	NA|160aa|up_9|NZ_CP040431.1_570907_571387_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_8|NZ_CP040431.1_571536_572841_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_7|NZ_CP040431.1_572819_573887_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|188aa|up_6|NZ_CP040431.1_574069_574633_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|up_5|NZ_CP040431.1_574877_576866_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|up_4|NZ_CP040431.1_576909_577200_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|up_3|NZ_CP040431.1_577282_577546_-	NA	NA|355aa|up_2|NZ_CP040431.1_577702_578767_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|up_1|NZ_CP040431.1_578763_579465_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|up_0|NZ_CP040431.1_579461_580145_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_0|NZ_CP040431.1_580261_581470_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NZ_CP040431.1_581469_581985_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|357aa|down_2|NZ_CP040431.1_582175_583246_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_3|NZ_CP040431.1_583596_584508_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|213aa|down_4|NZ_CP040431.1_584646_585285_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|310aa|down_5|NZ_CP040431.1_585393_586323_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|264aa|down_6|NZ_CP040431.1_586319_587111_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|219aa|down_7|NZ_CP040431.1_587175_587832_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|614aa|down_8|NZ_CP040431.1_587954_589796_-	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|193aa|down_9|NZ_CP040431.1_590278_590857_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	2	620481-620695	1	PILER-CR	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CGACGCCAAGCTCGCCCGCCAGGAAGCCGAGC	32	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|122aa|up_0|NZ_CP040431.1_619780_620146_+,NA|765aa|down_9|NZ_CP040431.1_631799_634094_+	NA|121aa|up_9|NZ_CP040431.1_605263_605626_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|880aa|up_8|NZ_CP040431.1_605818_608458_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|865aa|up_7|NZ_CP040431.1_608532_611127_+	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|472aa|up_6|NZ_CP040431.1_611686_613102_-	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|330aa|up_5|NZ_CP040431.1_613960_614950_+	pfam18288, FAA_hydro_N_2, Fumarylacetoacetase N-terminal domain 2	NA|223aa|up_4|NZ_CP040431.1_614964_615633_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|487aa|up_3|NZ_CP040431.1_615677_617138_-	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain	NA|428aa|up_2|NZ_CP040431.1_617118_618402_-	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein	NA|376aa|up_1|NZ_CP040431.1_618531_619659_-	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|122aa|up_0|NZ_CP040431.1_619780_620146_+	NA	NA|79aa|down_0|NZ_CP040431.1_621351_621588_+	pfam04325, DUF465, Protein of unknown function (DUF465)	NA|457aa|down_1|NZ_CP040431.1_621888_623259_+	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|394aa|down_2|NZ_CP040431.1_623382_624564_+	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme	NA|277aa|down_3|NZ_CP040431.1_624569_625400_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|465aa|down_4|NZ_CP040431.1_625389_626784_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|196aa|down_5|NZ_CP040431.1_626780_627368_+	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|341aa|down_6|NZ_CP040431.1_627402_628425_+	pfam13578, Methyltransf_24, Methyltransferase domain	NA|437aa|down_7|NZ_CP040431.1_628572_629883_+	cd11579, Glyco_tran_WbsX, Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases	NA|567aa|down_8|NZ_CP040431.1_629879_631580_+	pfam05045, RgpF, Rhamnan synthesis protein F	NA|765aa|down_9|NZ_CP040431.1_631799_634094_+	NA
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	3	822905-823004	2	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	TCATCCACGCATGGCGTGGATCT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|617aa|up_4|NZ_CP040431.1_816148_817999_-,NA|144aa|up_1|NZ_CP040431.1_820165_820597_-,NA|309aa|down_5|NZ_CP040431.1_830060_830987_+,NA|139aa|down_6|NZ_CP040431.1_831516_831933_+	NA|404aa|up_9|NZ_CP040431.1_809837_811049_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|up_8|NZ_CP040431.1_811372_813088_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|up_7|NZ_CP040431.1_813084_813885_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|353aa|up_6|NZ_CP040431.1_814024_815083_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|337aa|up_5|NZ_CP040431.1_815141_816152_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|617aa|up_4|NZ_CP040431.1_816148_817999_-	NA	NA|276aa|up_3|NZ_CP040431.1_818137_818965_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|up_2|NZ_CP040431.1_819022_820018_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|up_1|NZ_CP040431.1_820165_820597_-	NA	NA|306aa|up_0|NZ_CP040431.1_820706_821624_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|433aa|down_0|NZ_CP040431.1_823993_825292_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|324aa|down_1|NZ_CP040431.1_825485_826457_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|65aa|down_2|NZ_CP040431.1_826773_826968_+	pfam10636, hemP, Hemin uptake protein hemP	NA|742aa|down_3|NZ_CP040431.1_827157_829383_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|200aa|down_4|NZ_CP040431.1_829387_829987_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|309aa|down_5|NZ_CP040431.1_830060_830987_+	NA	NA|139aa|down_6|NZ_CP040431.1_831516_831933_+	NA	NA|839aa|down_7|NZ_CP040431.1_832011_834528_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|216aa|down_8|NZ_CP040431.1_834524_835172_-	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|215aa|down_9|NZ_CP040431.1_835247_835892_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	4	2258511-2258617	3	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	ATCCACGCATGGCGTGGATCTACC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|113aa|up_4|NZ_CP040431.1_2249112_2249451_+,NA|72aa|down_0|NZ_CP040431.1_2259256_2259472_-,NA|157aa|down_5|NZ_CP040431.1_2263137_2263608_-,NA|128aa|down_9|NZ_CP040431.1_2267499_2267883_-	NA|136aa|up_9|NZ_CP040431.1_2245924_2246332_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NZ_CP040431.1_2246335_2246731_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NZ_CP040431.1_2246868_2247813_-	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|219aa|up_6|NZ_CP040431.1_2248078_2248735_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NZ_CP040431.1_2248810_2249116_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NZ_CP040431.1_2249112_2249451_+	NA	NA|406aa|up_3|NZ_CP040431.1_2249542_2250760_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|591aa|up_2|NZ_CP040431.1_2251699_2253472_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NZ_CP040431.1_2253476_2255579_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_0|NZ_CP040431.1_2255710_2258470_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|72aa|down_0|NZ_CP040431.1_2259256_2259472_-	NA	NA|397aa|down_1|NZ_CP040431.1_2259570_2260761_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_2|NZ_CP040431.1_2260924_2261539_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_3|NZ_CP040431.1_2261535_2262678_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_4|NZ_CP040431.1_2262674_2263136_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|157aa|down_5|NZ_CP040431.1_2263137_2263608_-	NA	NA|109aa|down_6|NZ_CP040431.1_2263720_2264047_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_7|NZ_CP040431.1_2264184_2264997_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_8|NZ_CP040431.1_2265135_2267421_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|128aa|down_9|NZ_CP040431.1_2267499_2267883_-	NA
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	5	2569799-2570038	2	PILER-CR	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CTGAGGCTGGCCCAGCCATCCACGCATGGCGTGGATCTACTGCCGAGCGGCTTCTACTGCCCG	63	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|112aa|up_4|NZ_CP040431.1_2567332_2567668_+,NA|150aa|up_3|NZ_CP040431.1_2567798_2568248_-,NA|195aa|down_9|NZ_CP040431.1_2592672_2593257_-	NA|582aa|up_9|NZ_CP040431.1_2560774_2562520_-	pfam16930, Porin_5, Putative porin	NA|222aa|up_8|NZ_CP040431.1_2562562_2563228_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|138aa|up_7|NZ_CP040431.1_2563267_2563681_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|595aa|up_6|NZ_CP040431.1_2563691_2565476_-	COG5306, COG5306, Uncharacterized conserved protein [Function unknown]	NA|539aa|up_5|NZ_CP040431.1_2565514_2567131_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|112aa|up_4|NZ_CP040431.1_2567332_2567668_+	NA	NA|150aa|up_3|NZ_CP040431.1_2567798_2568248_-	NA	NA|149aa|up_2|NZ_CP040431.1_2568363_2568810_+	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|121aa|up_1|NZ_CP040431.1_2568806_2569169_+	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|205aa|up_0|NZ_CP040431.1_2569165_2569780_+	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|4128aa|down_0|NZ_CP040431.1_2570338_2582722_-	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein	NA|392aa|down_1|NZ_CP040431.1_2582921_2584097_-	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|400aa|down_2|NZ_CP040431.1_2584563_2585763_-	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|478aa|down_3|NZ_CP040431.1_2585770_2587204_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|794aa|down_4|NZ_CP040431.1_2587200_2589582_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|176aa|down_5|NZ_CP040431.1_2589578_2590106_-	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|388aa|down_6|NZ_CP040431.1_2590102_2591266_-	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|302aa|down_7|NZ_CP040431.1_2591262_2592168_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|146aa|down_8|NZ_CP040431.1_2592177_2592615_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|195aa|down_9|NZ_CP040431.1_2592672_2593257_-	NA
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	6	3021601-3021700	4	CRISPRCasFinder	no	DEDDh,csa3	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Type I-A	GGTAGATGCCCACCTTGGTGGGC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|100aa|up_9|NZ_CP040431.1_3013458_3013758_+,NA|105aa|up_8|NZ_CP040431.1_3013765_3014080_+,NA|98aa|down_6|NZ_CP040431.1_3034783_3035077_-	NA|100aa|up_9|NZ_CP040431.1_3013458_3013758_+	NA	NA|105aa|up_8|NZ_CP040431.1_3013765_3014080_+	NA	NA|213aa|up_7|NZ_CP040431.1_3014087_3014726_+	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|221aa|up_6|NZ_CP040431.1_3014800_3015463_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|174aa|up_5|NZ_CP040431.1_3015483_3016005_+	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|425aa|up_4|NZ_CP040431.1_3016167_3017442_+	TIGR01814, kynureninase, kynureninase	NA|456aa|up_3|NZ_CP040431.1_3017473_3018841_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	DEDDh|480aa|up_2|NZ_CP040431.1_3018840_3020280_+	PRK11779, sbcB, exonuclease I; Provisional	NA|229aa|up_1|NZ_CP040431.1_3020276_3020963_+	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	NA|184aa|up_0|NZ_CP040431.1_3021018_3021570_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|315aa|down_0|NZ_CP040431.1_3021750_3022695_-	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|258aa|down_1|NZ_CP040431.1_3022742_3023516_-	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|1659aa|down_2|NZ_CP040431.1_3024289_3029266_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|219aa|down_3|NZ_CP040431.1_3029516_3030173_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|423aa|down_4|NZ_CP040431.1_3030172_3031441_+	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1058aa|down_5|NZ_CP040431.1_3031456_3034630_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|98aa|down_6|NZ_CP040431.1_3034783_3035077_-	NA	NA|306aa|down_7|NZ_CP040431.1_3035354_3036272_+	PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional	NA|383aa|down_8|NZ_CP040431.1_3036317_3037466_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	csa3|310aa|down_9|NZ_CP040431.1_3037619_3038549_+	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	7	3747556-3747668	5	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	41	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|215aa|up_8|NZ_CP040431.1_3734586_3735231_+,NA|248aa|up_7|NZ_CP040431.1_3735407_3736151_-,NA	NA|808aa|up_9|NZ_CP040431.1_3731952_3734376_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|up_8|NZ_CP040431.1_3734586_3735231_+	NA	NA|248aa|up_7|NZ_CP040431.1_3735407_3736151_-	NA	NA|344aa|up_6|NZ_CP040431.1_3736220_3737252_-	pfam03895, YadA_anchor, YadA-like membrane anchor domain	NA|835aa|up_5|NZ_CP040431.1_3738121_3740626_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|up_4|NZ_CP040431.1_3740694_3741402_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|378aa|up_3|NZ_CP040431.1_3741418_3742552_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|909aa|up_2|NZ_CP040431.1_3742548_3745275_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|170aa|up_1|NZ_CP040431.1_3745325_3745835_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|363aa|up_0|NZ_CP040431.1_3746353_3747442_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|426aa|down_0|NZ_CP040431.1_3747807_3749085_-	PRK05614, gltA, citrate synthase	NA|81aa|down_1|NZ_CP040431.1_3749381_3749624_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|313aa|down_2|NZ_CP040431.1_3749712_3750651_-	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	NA|704aa|down_3|NZ_CP040431.1_3751051_3753163_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|129aa|down_4|NZ_CP040431.1_3753170_3753557_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|721aa|down_5|NZ_CP040431.1_3753739_3755902_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|100aa|down_6|NZ_CP040431.1_3756007_3756307_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|222aa|down_7|NZ_CP040431.1_3756417_3757083_-	PRK00300, gmk, guanylate kinase; Provisional	NA|1023aa|down_8|NZ_CP040431.1_3757374_3760443_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|306aa|down_9|NZ_CP040431.1_3760453_3761371_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	8	3839480-3839588	6	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	32	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA,NA	NA|579aa|up_9|NZ_CP040431.1_3828913_3830650_+	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed	NA|84aa|up_8|NZ_CP040431.1_3830633_3830885_+	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]	NA|364aa|up_7|NZ_CP040431.1_3830981_3832073_+	PRK08813, PRK08813, threonine dehydratase; Provisional	NA|529aa|up_6|NZ_CP040431.1_3832069_3833656_+	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated	NA|260aa|up_5|NZ_CP040431.1_3833666_3834446_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|473aa|up_4|NZ_CP040431.1_3834506_3835925_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|193aa|up_3|NZ_CP040431.1_3835924_3836503_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|354aa|up_2|NZ_CP040431.1_3836492_3837554_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|258aa|up_1|NZ_CP040431.1_3837655_3838429_-	PRK12744, PRK12744, SDR family oxidoreductase	NA|302aa|up_0|NZ_CP040431.1_3838546_3839452_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|1054aa|down_0|NZ_CP040431.1_3839610_3842772_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|377aa|down_1|NZ_CP040431.1_3842776_3843907_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|227aa|down_2|NZ_CP040431.1_3844024_3844705_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|216aa|down_3|NZ_CP040431.1_3844841_3845489_+	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|453aa|down_4|NZ_CP040431.1_3845505_3846864_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|406aa|down_5|NZ_CP040431.1_3846951_3848169_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|433aa|down_6|NZ_CP040431.1_3848385_3849684_-	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|306aa|down_7|NZ_CP040431.1_3849744_3850662_+	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA|444aa|down_8|NZ_CP040431.1_3851218_3852550_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|372aa|down_9|NZ_CP040431.1_3852530_3853646_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	9	3940119-3940249	7	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GTGCCGACCGAGGTCGGCACCTACCAG	27	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|296aa|up_9|NZ_CP040431.1_3929526_3930414_+,NA|213aa|up_4|NZ_CP040431.1_3935641_3936280_+,NA|112aa|up_2|NZ_CP040431.1_3937841_3938177_-,NA|145aa|up_0|NZ_CP040431.1_3939634_3940069_+,NA	NA|296aa|up_9|NZ_CP040431.1_3929526_3930414_+	NA	NA|136aa|up_8|NZ_CP040431.1_3930470_3930878_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|662aa|up_7|NZ_CP040431.1_3931028_3933014_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|407aa|up_6|NZ_CP040431.1_3933218_3934439_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|145aa|up_5|NZ_CP040431.1_3934518_3934953_-	pfam07179, SseB, SseB protein N-terminal domain	NA|213aa|up_4|NZ_CP040431.1_3935641_3936280_+	NA	NA|495aa|up_3|NZ_CP040431.1_3936276_3937761_+	cd00519, Lipase_3, Lipase (class 3)	NA|112aa|up_2|NZ_CP040431.1_3937841_3938177_-	NA	NA|346aa|up_1|NZ_CP040431.1_3938180_3939218_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|145aa|up_0|NZ_CP040431.1_3939634_3940069_+	NA	NA|1010aa|down_0|NZ_CP040431.1_3940276_3943306_-	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|356aa|down_1|NZ_CP040431.1_3943604_3944672_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|down_2|NZ_CP040431.1_3944671_3945820_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|343aa|down_3|NZ_CP040431.1_3945819_3946848_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|356aa|down_4|NZ_CP040431.1_3946855_3947923_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|430aa|down_5|NZ_CP040431.1_3947962_3949252_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|down_6|NZ_CP040431.1_3949630_3950650_+	PRK12408, PRK12408, glucokinase; Provisional	NA|903aa|down_7|NZ_CP040431.1_3950793_3953502_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|786aa|down_8|NZ_CP040431.1_3953613_3955971_+	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|131aa|down_9|NZ_CP040431.1_3956076_3956469_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]
GCF_009676425.1_ASM967642v1	NZ_CP040431	Stenotrophomonas maltophilia strain sm454 chromosome, complete genome	10	4346021-4346124	8	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GTGTGCCAACCAAGGTTGGCACCTA	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|129aa|up_7|NZ_CP040431.1_4324421_4324808_-,NA|273aa|up_6|NZ_CP040431.1_4332589_4333408_-,NA|222aa|up_2|NZ_CP040431.1_4342176_4342842_+,NA|129aa|up_1|NZ_CP040431.1_4342912_4343299_-,NA|143aa|down_4|NZ_CP040431.1_4349803_4350232_-,NA|193aa|down_6|NZ_CP040431.1_4352229_4352808_+	NA|883aa|up_9|NZ_CP040431.1_4318958_4321607_-	pfam05593, RHS_repeat, RHS Repeat	NA|500aa|up_8|NZ_CP040431.1_4322021_4323521_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|129aa|up_7|NZ_CP040431.1_4324421_4324808_-	NA	NA|273aa|up_6|NZ_CP040431.1_4332589_4333408_-	NA	NA|1316aa|up_5|NZ_CP040431.1_4333420_4337368_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|883aa|up_4|NZ_CP040431.1_4337450_4340099_-	pfam05593, RHS_repeat, RHS Repeat	NA|500aa|up_3|NZ_CP040431.1_4340513_4342013_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|222aa|up_2|NZ_CP040431.1_4342176_4342842_+	NA	NA|129aa|up_1|NZ_CP040431.1_4342912_4343299_-	NA	NA|773aa|up_0|NZ_CP040431.1_4343407_4345726_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|278aa|down_0|NZ_CP040431.1_4346170_4347004_-	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|217aa|down_1|NZ_CP040431.1_4347153_4347804_+	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|437aa|down_2|NZ_CP040431.1_4347951_4349262_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|147aa|down_3|NZ_CP040431.1_4349254_4349695_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|143aa|down_4|NZ_CP040431.1_4349803_4350232_-	NA	NA|589aa|down_5|NZ_CP040431.1_4350463_4352230_+	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases	NA|193aa|down_6|NZ_CP040431.1_4352229_4352808_+	NA	NA|227aa|down_7|NZ_CP040431.1_4352910_4353591_-	COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]	NA|111aa|down_8|NZ_CP040431.1_4353602_4353935_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|212aa|down_9|NZ_CP040431.1_4353936_4354572_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III
