assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	1	534370-534471	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GGTAGGTGCCGACCGTTGGTCGGCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|88aa|up_3|NZ_CP040430.1_531504_531768_-,NA	NA|160aa|up_9|NZ_CP040430.1_525030_525510_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_8|NZ_CP040430.1_525659_526964_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_7|NZ_CP040430.1_526942_528010_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|188aa|up_6|NZ_CP040430.1_528291_528855_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|up_5|NZ_CP040430.1_529099_531088_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|up_4|NZ_CP040430.1_531131_531422_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|up_3|NZ_CP040430.1_531504_531768_-	NA	NA|355aa|up_2|NZ_CP040430.1_531924_532989_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|up_1|NZ_CP040430.1_532985_533687_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|up_0|NZ_CP040430.1_533683_534367_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_0|NZ_CP040430.1_534482_535691_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NZ_CP040430.1_535690_536206_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|365aa|down_2|NZ_CP040430.1_536396_537491_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_3|NZ_CP040430.1_537884_538796_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|213aa|down_4|NZ_CP040430.1_538934_539573_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|310aa|down_5|NZ_CP040430.1_539681_540611_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|264aa|down_6|NZ_CP040430.1_540607_541399_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|219aa|down_7|NZ_CP040430.1_541463_542120_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|614aa|down_8|NZ_CP040430.1_542220_544062_-	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|193aa|down_9|NZ_CP040430.1_544543_545122_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	2	574402-574616	1	PILER-CR	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CGACGCCAAGCTCGCCCGCCAGGAAGCCGAGC	32	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|122aa|up_0|NZ_CP040430.1_573701_574067_+,NA	NA|121aa|up_9|NZ_CP040430.1_559193_559556_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|880aa|up_8|NZ_CP040430.1_559748_562388_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|865aa|up_7|NZ_CP040430.1_562462_565057_+	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|471aa|up_6|NZ_CP040430.1_565605_567018_-	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|330aa|up_5|NZ_CP040430.1_567876_568866_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|223aa|up_4|NZ_CP040430.1_568880_569549_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|487aa|up_3|NZ_CP040430.1_569597_571058_-	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain	NA|428aa|up_2|NZ_CP040430.1_571038_572322_-	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein	NA|376aa|up_1|NZ_CP040430.1_572452_573580_-	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|122aa|up_0|NZ_CP040430.1_573701_574067_+	NA	NA|79aa|down_0|NZ_CP040430.1_575272_575509_+	pfam04325, DUF465, Protein of unknown function (DUF465)	NA|457aa|down_1|NZ_CP040430.1_575809_577180_+	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|392aa|down_2|NZ_CP040430.1_577303_578479_+	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme	NA|465aa|down_3|NZ_CP040430.1_578497_579892_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|262aa|down_4|NZ_CP040430.1_579897_580683_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|417aa|down_5|NZ_CP040430.1_580694_581945_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|491aa|down_6|NZ_CP040430.1_581941_583414_+	pfam05050, Methyltransf_21, Methyltransferase FkbM domain	NA|960aa|down_7|NZ_CP040430.1_583414_586294_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|346aa|down_8|NZ_CP040430.1_586559_587597_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|302aa|down_9|NZ_CP040430.1_587580_588486_+	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	3	1854297-1854443	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	TGCCGGCCAGCGGCCGGCACTACC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|166aa|up_2|NZ_CP040430.1_1851808_1852306_+,NA	NA|172aa|up_9|NZ_CP040430.1_1845124_1845640_+	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|108aa|up_8|NZ_CP040430.1_1845825_1846149_-	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|475aa|up_7|NZ_CP040430.1_1846341_1847766_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|460aa|up_6|NZ_CP040430.1_1848187_1849567_+	PRK11623, pcnB, poly(A) polymerase I; Provisional	NA|162aa|up_5|NZ_CP040430.1_1849570_1850056_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|272aa|up_4|NZ_CP040430.1_1850090_1850906_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|280aa|up_3|NZ_CP040430.1_1850902_1851742_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|166aa|up_2|NZ_CP040430.1_1851808_1852306_+	NA	NA|127aa|up_1|NZ_CP040430.1_1852393_1852774_+	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|505aa|up_0|NZ_CP040430.1_1852770_1854285_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|188aa|down_0|NZ_CP040430.1_1854460_1855024_-	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]	NA|409aa|down_1|NZ_CP040430.1_1855020_1856247_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|422aa|down_2|NZ_CP040430.1_1856361_1857627_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|250aa|down_3|NZ_CP040430.1_1857607_1858357_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|216aa|down_4|NZ_CP040430.1_1858557_1859205_+	PRK09483, PRK09483, response regulator; Provisional	NA|220aa|down_5|NZ_CP040430.1_1859535_1860195_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|639aa|down_6|NZ_CP040430.1_1860399_1862316_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|241aa|down_7|NZ_CP040430.1_1862374_1863097_-	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate	NA|336aa|down_8|NZ_CP040430.1_1863093_1864101_-	PRK00292, glk, glucokinase; Provisional	NA|479aa|down_9|NZ_CP040430.1_1864097_1865534_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	4	2286958-2287065	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	ATCCACGCATGCCGTGGATCTACC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|113aa|up_4|NZ_CP040430.1_2277667_2278006_+,NA|72aa|down_0|NZ_CP040430.1_2287704_2287920_-,NA|157aa|down_5|NZ_CP040430.1_2291641_2292112_-,NA|128aa|down_9|NZ_CP040430.1_2296019_2296403_-	NA|136aa|up_9|NZ_CP040430.1_2274494_2274902_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NZ_CP040430.1_2274905_2275301_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NZ_CP040430.1_2275438_2276383_-	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|219aa|up_6|NZ_CP040430.1_2276633_2277290_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NZ_CP040430.1_2277365_2277671_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NZ_CP040430.1_2277667_2278006_+	NA	NA|406aa|up_3|NZ_CP040430.1_2278097_2279315_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|591aa|up_2|NZ_CP040430.1_2280146_2281919_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NZ_CP040430.1_2281923_2284026_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_0|NZ_CP040430.1_2284157_2286917_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|72aa|down_0|NZ_CP040430.1_2287704_2287920_-	NA	NA|397aa|down_1|NZ_CP040430.1_2288018_2289209_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_2|NZ_CP040430.1_2289428_2290043_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_3|NZ_CP040430.1_2290039_2291182_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_4|NZ_CP040430.1_2291178_2291640_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|157aa|down_5|NZ_CP040430.1_2291641_2292112_-	NA	NA|109aa|down_6|NZ_CP040430.1_2292224_2292551_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_7|NZ_CP040430.1_2292704_2293517_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_8|NZ_CP040430.1_2293655_2295941_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|128aa|down_9|NZ_CP040430.1_2296019_2296403_-	NA
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	5	2553465-2553568	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GTAGTGCCGGCCGCTGGCAGGCAACCTC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|280aa|up_5|NZ_CP040430.1_2545483_2546323_+,NA|100aa|up_1|NZ_CP040430.1_2549576_2549876_+,NA|89aa|down_6|NZ_CP040430.1_2558069_2558336_-	NA|226aa|up_9|NZ_CP040430.1_2537782_2538460_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|214aa|up_8|NZ_CP040430.1_2538516_2539158_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|1133aa|up_7|NZ_CP040430.1_2539184_2542583_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|888aa|up_6|NZ_CP040430.1_2542588_2545252_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|280aa|up_5|NZ_CP040430.1_2545483_2546323_+	NA	NA|222aa|up_4|NZ_CP040430.1_2546339_2547005_-	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional	NA|320aa|up_3|NZ_CP040430.1_2547118_2548078_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|287aa|up_2|NZ_CP040430.1_2548188_2549049_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|100aa|up_1|NZ_CP040430.1_2549576_2549876_+	NA	NA|920aa|up_0|NZ_CP040430.1_2549939_2552699_+	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA	NA|352aa|down_0|NZ_CP040430.1_2553741_2554797_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|214aa|down_1|NZ_CP040430.1_2554789_2555431_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|172aa|down_2|NZ_CP040430.1_2555427_2555943_+	pfam08002, DUF1697, Protein of unknown function (DUF1697)	NA|131aa|down_3|NZ_CP040430.1_2555939_2556332_-	pfam11528, DUF3224, Protein of unknown function (DUF3224)	NA|145aa|down_4|NZ_CP040430.1_2556365_2556800_-	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|391aa|down_5|NZ_CP040430.1_2556887_2558060_-	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|89aa|down_6|NZ_CP040430.1_2558069_2558336_-	NA	NA|175aa|down_7|NZ_CP040430.1_2558540_2559065_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|284aa|down_8|NZ_CP040430.1_2559061_2559913_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|810aa|down_9|NZ_CP040430.1_2559984_2562414_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	6	2596471-2596593	5	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CGACCCACGGATTCCGGTAGACGCCCACCTTGGT	34	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA,NA|205aa|down_4|NZ_CP040430.1_2601926_2602541_-	NA|295aa|up_9|NZ_CP040430.1_2583804_2584689_+	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|233aa|up_8|NZ_CP040430.1_2584734_2585433_+	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|456aa|up_7|NZ_CP040430.1_2585429_2586797_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|314aa|up_6|NZ_CP040430.1_2586932_2587874_-	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|248aa|up_5|NZ_CP040430.1_2587980_2588724_+	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|1026aa|up_4|NZ_CP040430.1_2588824_2591902_-	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|391aa|up_3|NZ_CP040430.1_2591898_2593071_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|416aa|up_2|NZ_CP040430.1_2593067_2594315_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|225aa|up_1|NZ_CP040430.1_2594377_2595052_+	PRK10643, PRK10643, two-component system response regulator PmrA	NA|461aa|up_0|NZ_CP040430.1_2595044_2596427_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|784aa|down_0|NZ_CP040430.1_2596680_2599032_-	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|108aa|down_1|NZ_CP040430.1_2599128_2599452_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|139aa|down_2|NZ_CP040430.1_2599457_2599874_-	pfam10116, Host_attach, Protein required for attachment to host cells	NA|496aa|down_3|NZ_CP040430.1_2600354_2601842_+	PRK10642, PRK10642, proline/glycine betaine transporter ProP	NA|205aa|down_4|NZ_CP040430.1_2601926_2602541_-	NA	NA|209aa|down_5|NZ_CP040430.1_2602646_2603273_-	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|114aa|down_6|NZ_CP040430.1_2603276_2603618_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|532aa|down_7|NZ_CP040430.1_2603688_2605284_-	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|135aa|down_8|NZ_CP040430.1_2605293_2605698_-	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators	NA|485aa|down_9|NZ_CP040430.1_2605834_2607289_-	pfam04575, DUF560, Protein of unknown function (DUF560)
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	7	3027811-3027910	6	CRISPRCasFinder	no	DEDDh,csa3	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Type I-A	GGTAGATGCCCACCTTGGTGGGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|100aa|up_9|NZ_CP040430.1_3019668_3019968_+,NA|105aa|up_8|NZ_CP040430.1_3019975_3020290_+,NA|98aa|down_6|NZ_CP040430.1_3040410_3040704_-	NA|100aa|up_9|NZ_CP040430.1_3019668_3019968_+	NA	NA|105aa|up_8|NZ_CP040430.1_3019975_3020290_+	NA	NA|213aa|up_7|NZ_CP040430.1_3020297_3020936_+	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|221aa|up_6|NZ_CP040430.1_3021010_3021673_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|174aa|up_5|NZ_CP040430.1_3021693_3022215_+	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|425aa|up_4|NZ_CP040430.1_3022377_3023652_+	TIGR01814, kynureninase, kynureninase	NA|456aa|up_3|NZ_CP040430.1_3023683_3025051_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	DEDDh|480aa|up_2|NZ_CP040430.1_3025050_3026490_+	PRK11779, sbcB, exonuclease I; Provisional	NA|229aa|up_1|NZ_CP040430.1_3026486_3027173_+	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	NA|184aa|up_0|NZ_CP040430.1_3027228_3027780_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|315aa|down_0|NZ_CP040430.1_3027960_3028905_-	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|258aa|down_1|NZ_CP040430.1_3028952_3029726_-	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|1659aa|down_2|NZ_CP040430.1_3029916_3034893_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|219aa|down_3|NZ_CP040430.1_3035143_3035800_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|423aa|down_4|NZ_CP040430.1_3035799_3037068_+	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1058aa|down_5|NZ_CP040430.1_3037083_3040257_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|98aa|down_6|NZ_CP040430.1_3040410_3040704_-	NA	NA|306aa|down_7|NZ_CP040430.1_3040981_3041899_+	PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional	NA|383aa|down_8|NZ_CP040430.1_3041944_3043093_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	csa3|310aa|down_9|NZ_CP040430.1_3043246_3044176_+	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	8	3490052-3490155	7	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CGGTCGTGCCGGCCGCTGGCCGGCAA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|180aa|up_6|NZ_CP040430.1_3482873_3483413_+,NA|97aa|up_5|NZ_CP040430.1_3483427_3483718_+,NA|221aa|up_1|NZ_CP040430.1_3487746_3488409_-,NA	NA|697aa|up_9|NZ_CP040430.1_3479378_3481469_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|164aa|up_8|NZ_CP040430.1_3481491_3481983_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|247aa|up_7|NZ_CP040430.1_3481992_3482733_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|180aa|up_6|NZ_CP040430.1_3482873_3483413_+	NA	NA|97aa|up_5|NZ_CP040430.1_3483427_3483718_+	NA	NA|709aa|up_4|NZ_CP040430.1_3483807_3485934_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|321aa|up_3|NZ_CP040430.1_3486166_3487129_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|226aa|up_2|NZ_CP040430.1_3487133_3487811_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|221aa|up_1|NZ_CP040430.1_3487746_3488409_-	NA	NA|431aa|up_0|NZ_CP040430.1_3488526_3489819_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|62aa|down_0|NZ_CP040430.1_3490190_3490376_-	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown]	NA|288aa|down_1|NZ_CP040430.1_3490443_3491307_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|378aa|down_2|NZ_CP040430.1_3491303_3492437_-	TIGR01933, Protein_HflK, HflK protein	NA|332aa|down_3|NZ_CP040430.1_3492590_3493586_+	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|124aa|down_4|NZ_CP040430.1_3493674_3494046_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|298aa|down_5|NZ_CP040430.1_3494134_3495028_-	PRK10266, PRK10266, curved DNA-binding protein	NA|161aa|down_6|NZ_CP040430.1_3495288_3495771_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|192aa|down_7|NZ_CP040430.1_3495800_3496376_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|794aa|down_8|NZ_CP040430.1_3496450_3498832_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|1636aa|down_9|NZ_CP040430.1_3498896_3503804_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	9	3616095-3616173	8	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	TGCCTGGCGGGTCAGGGAGTGCGA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|113aa|up_1|NZ_CP040430.1_3614459_3614798_+,NA	NA|603aa|up_9|NZ_CP040430.1_3607106_3608915_+	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|342aa|up_8|NZ_CP040430.1_3608911_3609937_+	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|171aa|up_7|NZ_CP040430.1_3610018_3610531_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|103aa|up_6|NZ_CP040430.1_3610604_3610913_-	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|up_5|NZ_CP040430.1_3611062_3611830_+	pfam02517, Abi, CAAX protease self-immunity	NA|141aa|up_4|NZ_CP040430.1_3611922_3612345_+	pfam00072, Response_reg, Response regulator receiver domain	NA|313aa|up_3|NZ_CP040430.1_3612421_3613360_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|281aa|up_2|NZ_CP040430.1_3613442_3614285_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|113aa|up_1|NZ_CP040430.1_3614459_3614798_+	NA	NA|319aa|up_0|NZ_CP040430.1_3615127_3616084_+	pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268)	NA|222aa|down_0|NZ_CP040430.1_3616271_3616937_-	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|234aa|down_1|NZ_CP040430.1_3617015_3617717_-	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|273aa|down_2|NZ_CP040430.1_3617856_3618675_-	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]	NA|173aa|down_3|NZ_CP040430.1_3618678_3619197_-	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|440aa|down_4|NZ_CP040430.1_3619261_3620581_-	PRK04922, tolB, Tol-Pal system beta propeller repeat protein TolB	NA|352aa|down_5|NZ_CP040430.1_3620864_3621920_-	TIGR02794, Protein_TolA, TolA protein	NA|143aa|down_6|NZ_CP040430.1_3621909_3622338_-	TIGR02801, Protein_TolR, TolR protein	NA|260aa|down_7|NZ_CP040430.1_3622362_3623142_-	TIGR02796, Protein_TolQ, TolQ protein	NA|144aa|down_8|NZ_CP040430.1_3623152_3623584_-	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|347aa|down_9|NZ_CP040430.1_3623573_3624614_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	10	3756281-3756444	2	PILER-CR	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CACCTACCAAAGCGTTGGTGGGTGCCAACCTTGGTTGGCACC	42	1	8	3756400-3756418|3756400-3756418|3756400-3756418|3756400-3756418|3756400-3756418|3756400-3756418|3756400-3756418|3756400-3756418	NZ_CP040430.1_4015961-4015979|NZ_CP040430.1_4428759-4428741|NZ_CP040430.1_1897120-1897138|NZ_CP040430.1_4674324-4674306|NZ_CP040430.1_61237-61255|NZ_CP040430.1_528155-528137|NZ_CP040430.1_3118066-3118084|NZ_CP040430.1_4015937-4015919	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA,NA|215aa|down_0|NZ_CP040430.1_3756516_3757161_+,NA|248aa|down_1|NZ_CP040430.1_3757337_3758081_-	NA|335aa|up_9|NZ_CP040430.1_3744708_3745713_-	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|150aa|up_8|NZ_CP040430.1_3745709_3746159_-	pfam14316, DUF4381, Domain of unknown function (DUF4381)	NA|310aa|up_7|NZ_CP040430.1_3746155_3747085_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|342aa|up_6|NZ_CP040430.1_3747093_3748119_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|656aa|up_5|NZ_CP040430.1_3748317_3750285_-	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ	NA|168aa|up_4|NZ_CP040430.1_3750306_3750810_-	pfam04351, PilP, Pilus assembly protein, PilP	NA|219aa|up_3|NZ_CP040430.1_3750836_3751493_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|291aa|up_2|NZ_CP040430.1_3751489_3752362_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|353aa|up_1|NZ_CP040430.1_3752361_3753420_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_0|NZ_CP040430.1_3753639_3756063_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|down_0|NZ_CP040430.1_3756516_3757161_+	NA	NA|248aa|down_1|NZ_CP040430.1_3757337_3758081_-	NA	NA|1688aa|down_2|NZ_CP040430.1_3758150_3763214_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|down_3|NZ_CP040430.1_3763275_3763983_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|379aa|down_4|NZ_CP040430.1_3764001_3765138_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|910aa|down_5|NZ_CP040430.1_3765134_3767864_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|166aa|down_6|NZ_CP040430.1_3767924_3768422_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|336aa|down_7|NZ_CP040430.1_3768939_3769947_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|426aa|down_8|NZ_CP040430.1_3770384_3771662_-	PRK05614, gltA, citrate synthase	NA|81aa|down_9|NZ_CP040430.1_3771958_3772201_-	PRK01678, rpmE2, type B 50S ribosomal protein L31
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	11	3963277-3963410	9	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CGACCAAGGTCGGCACCCACCAGAGCGG	28	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|213aa|up_4|NZ_CP040430.1_3958801_3959440_+,NA|112aa|up_2|NZ_CP040430.1_3961001_3961337_-,NA|145aa|up_0|NZ_CP040430.1_3962788_3963223_+,NA	NA|954aa|up_9|NZ_CP040430.1_3950450_3953312_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|137aa|up_8|NZ_CP040430.1_3953582_3953993_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|662aa|up_7|NZ_CP040430.1_3954188_3956174_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|407aa|up_6|NZ_CP040430.1_3956378_3957599_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|145aa|up_5|NZ_CP040430.1_3957678_3958113_-	pfam07179, SseB, SseB protein N-terminal domain	NA|213aa|up_4|NZ_CP040430.1_3958801_3959440_+	NA	NA|495aa|up_3|NZ_CP040430.1_3959436_3960921_+	cd00519, Lipase_3, Lipase (class 3)	NA|112aa|up_2|NZ_CP040430.1_3961001_3961337_-	NA	NA|348aa|up_1|NZ_CP040430.1_3961333_3962377_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|145aa|up_0|NZ_CP040430.1_3962788_3963223_+	NA	NA|1010aa|down_0|NZ_CP040430.1_3963432_3966462_-	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|356aa|down_1|NZ_CP040430.1_3966761_3967829_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|down_2|NZ_CP040430.1_3967828_3968977_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|343aa|down_3|NZ_CP040430.1_3968976_3970005_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|356aa|down_4|NZ_CP040430.1_3970012_3971080_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|430aa|down_5|NZ_CP040430.1_3971119_3972409_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|down_6|NZ_CP040430.1_3972787_3973807_+	PRK12408, PRK12408, glucokinase; Provisional	NA|903aa|down_7|NZ_CP040430.1_3973950_3976659_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|786aa|down_8|NZ_CP040430.1_3976770_3979128_+	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|131aa|down_9|NZ_CP040430.1_3979233_3979626_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	12	3998680-3998780	10	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GCTCGCTGTAAGCGAGGGGCTGAGGGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|412aa|up_5|NZ_CP040430.1_3990753_3991989_-,NA	NA|606aa|up_9|NZ_CP040430.1_3985897_3987715_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_8|NZ_CP040430.1_3987949_3988333_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_7|NZ_CP040430.1_3988504_3989548_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_6|NZ_CP040430.1_3989837_3990743_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|412aa|up_5|NZ_CP040430.1_3990753_3991989_-	NA	NA|197aa|up_4|NZ_CP040430.1_3992006_3992597_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_3|NZ_CP040430.1_3992841_3995019_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|337aa|up_2|NZ_CP040430.1_3995275_3996286_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|237aa|up_1|NZ_CP040430.1_3996303_3997014_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_0|NZ_CP040430.1_3997001_3997280_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|406aa|down_0|NZ_CP040430.1_3998945_4000163_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|423aa|down_1|NZ_CP040430.1_4000263_4001532_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|down_2|NZ_CP040430.1_4001528_4002674_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|down_3|NZ_CP040430.1_4003665_4004760_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|down_4|NZ_CP040430.1_4004896_4006009_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|down_5|NZ_CP040430.1_4006005_4008081_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|down_6|NZ_CP040430.1_4008084_4008570_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|422aa|down_7|NZ_CP040430.1_4008566_4009832_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|349aa|down_8|NZ_CP040430.1_4009953_4011000_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_9|NZ_CP040430.1_4011283_4012222_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	13	4204888-4204972	11	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GTAGATCCACGTCATGCGTGGATGGAAGCC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|125aa|up_4|NZ_CP040430.1_4201153_4201528_-,NA|322aa|up_3|NZ_CP040430.1_4201524_4202490_-,NA|146aa|down_2|NZ_CP040430.1_4206614_4207052_-	NA|276aa|up_9|NZ_CP040430.1_4196588_4197416_-	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase	NA|243aa|up_8|NZ_CP040430.1_4197582_4198311_+	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family	NA|148aa|up_7|NZ_CP040430.1_4198695_4199139_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|160aa|up_6|NZ_CP040430.1_4199198_4199678_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_CP040430.1_4199688_4201056_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|125aa|up_4|NZ_CP040430.1_4201153_4201528_-	NA	NA|322aa|up_3|NZ_CP040430.1_4201524_4202490_-	NA	NA|307aa|up_2|NZ_CP040430.1_4202654_4203575_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|256aa|up_1|NZ_CP040430.1_4203617_4204385_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|92aa|up_0|NZ_CP040430.1_4204499_4204775_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|332aa|down_0|NZ_CP040430.1_4204979_4205975_-	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|210aa|down_1|NZ_CP040430.1_4205971_4206601_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|146aa|down_2|NZ_CP040430.1_4206614_4207052_-	NA	NA|443aa|down_3|NZ_CP040430.1_4207048_4208377_-	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|584aa|down_4|NZ_CP040430.1_4208376_4210128_-	pfam12147, Methyltransf_20, Putative methyltransferase	NA|206aa|down_5|NZ_CP040430.1_4210162_4210780_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|528aa|down_6|NZ_CP040430.1_4211003_4212587_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|428aa|down_7|NZ_CP040430.1_4212648_4213932_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|111aa|down_8|NZ_CP040430.1_4214010_4214343_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|130aa|down_9|NZ_CP040430.1_4214326_4214716_-	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	14	4345760-4345863	12	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	GTGTGCCAACCAAGGTTGGCACCTA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA|119aa|up_6|NZ_CP040430.1_4335329_4335686_+,NA|900aa|up_4|NZ_CP040430.1_4337132_4339832_+,NA|129aa|up_1|NZ_CP040430.1_4342648_4343035_-,NA|193aa|down_5|NZ_CP040430.1_4351510_4352089_+	NA|201aa|up_9|NZ_CP040430.1_4332825_4333428_-	pfam06197, DUF998, Protein of unknown function (DUF998)	NA|287aa|up_8|NZ_CP040430.1_4333833_4334694_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|98aa|up_7|NZ_CP040430.1_4334690_4334984_-	pfam01527, HTH_Tnp_1, Transposase	NA|119aa|up_6|NZ_CP040430.1_4335329_4335686_+	NA	NA|222aa|up_5|NZ_CP040430.1_4336425_4337091_+	pfam07791, DUF1629, Protein of unknown function (DUF1629)	NA|900aa|up_4|NZ_CP040430.1_4337132_4339832_+	NA	NA|253aa|up_3|NZ_CP040430.1_4339931_4340690_-	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|500aa|up_2|NZ_CP040430.1_4340952_4342452_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|129aa|up_1|NZ_CP040430.1_4342648_4343035_-	NA	NA|773aa|up_0|NZ_CP040430.1_4343143_4345462_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|278aa|down_0|NZ_CP040430.1_4345909_4346743_-	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|217aa|down_1|NZ_CP040430.1_4346892_4347543_+	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|437aa|down_2|NZ_CP040430.1_4347690_4349001_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|147aa|down_3|NZ_CP040430.1_4348993_4349434_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|589aa|down_4|NZ_CP040430.1_4349744_4351511_+	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases	NA|193aa|down_5|NZ_CP040430.1_4351510_4352089_+	NA	NA|227aa|down_6|NZ_CP040430.1_4352192_4352873_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|111aa|down_7|NZ_CP040430.1_4352884_4353217_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|212aa|down_8|NZ_CP040430.1_4353218_4353854_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|659aa|down_9|NZ_CP040430.1_4353850_4355827_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I
GCF_009676405.1_ASM967640v1	NZ_CP040430	Stenotrophomonas maltophilia strain Sm53 chromosome, complete genome	15	4633434-4633520	13	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	Orphan	CCCATGGGTAGTGCCGGCCGCTGGCCGGCAT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG,PD-DExK	NA,NA|133aa|down_9|NZ_CP040430.1_4645797_4646196_+	NA|544aa|up_9|NZ_CP040430.1_4610565_4612197_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|396aa|up_8|NZ_CP040430.1_4624147_4625335_+	pfam03594, BenE, Benzoate membrane transport protein	NA|258aa|up_7|NZ_CP040430.1_4625341_4626115_-	pfam14237, DUF4339, Domain of unknown function (DUF4339)	NA|289aa|up_6|NZ_CP040430.1_4626166_4627033_-	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|426aa|up_5|NZ_CP040430.1_4627073_4628351_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|325aa|up_4|NZ_CP040430.1_4628435_4629410_-	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase	NA|424aa|up_3|NZ_CP040430.1_4629406_4630678_-	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|427aa|up_2|NZ_CP040430.1_4630828_4632109_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|131aa|up_1|NZ_CP040430.1_4632112_4632505_-	PRK04233, PRK04233, hypothetical protein; Provisional	NA|260aa|up_0|NZ_CP040430.1_4632607_4633387_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|1127aa|down_0|NZ_CP040430.1_4633539_4636920_-	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]	NA|234aa|down_1|NZ_CP040430.1_4636936_4637638_-	pfam13835, DUF4194, Domain of unknown function (DUF4194)	NA|490aa|down_2|NZ_CP040430.1_4637624_4639094_-	pfam11855, DUF3375, Protein of unknown function (DUF3375)	NA|204aa|down_3|NZ_CP040430.1_4639206_4639818_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|152aa|down_4|NZ_CP040430.1_4640505_4640961_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|70aa|down_5|NZ_CP040430.1_4641070_4641280_+	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|310aa|down_6|NZ_CP040430.1_4641264_4642194_+	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|490aa|down_7|NZ_CP040430.1_4642190_4643660_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|680aa|down_8|NZ_CP040430.1_4643663_4645703_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|133aa|down_9|NZ_CP040430.1_4645797_4646196_+	NA
