assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	1	1026427-1026821	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|47aa|up_1|NZ_CP046003.1_1025136_1025277_-,NA	NA|434aa|up_9|NZ_CP046003.1_1015833_1017135_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP046003.1_1017182_1019417_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP046003.1_1019494_1019743_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP046003.1_1019742_1020078_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP046003.1_1020148_1020940_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP046003.1_1021167_1022805_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP046003.1_1022892_1024191_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP046003.1_1024250_1025123_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP046003.1_1025136_1025277_-	NA	NA|224aa|up_0|NZ_CP046003.1_1025415_1026087_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP046003.1_1027459_1028938_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP046003.1_1028964_1030242_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP046003.1_1030560_1031346_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP046003.1_1031415_1032870_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP046003.1_1032963_1034301_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP046003.1_1034278_1035058_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP046003.1_1035054_1035915_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP046003.1_1036062_1036638_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP046003.1_1036654_1036915_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP046003.1_1036905_1038177_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	2	1047582-1048341	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	Unclear	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|192aa|up_9|NZ_CP046003.1_1036062_1036638_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_8|NZ_CP046003.1_1036654_1036915_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_7|NZ_CP046003.1_1036905_1038177_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_6|NZ_CP046003.1_1038254_1038620_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_5|NZ_CP046003.1_1038935_1040735_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_4|NZ_CP046003.1_1040734_1042447_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_3|NZ_CP046003.1_1042520_1043255_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_2|NZ_CP046003.1_1043519_1043672_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_1|NZ_CP046003.1_1043864_1044977_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas2|78aa|up_0|NZ_CP046003.1_1047251_1047485_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP046003.1_1048423_1049461_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP046003.1_1049712_1050621_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP046003.1_1050622_1052050_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP046003.1_1052049_1052655_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP046003.1_1052704_1053028_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP046003.1_1053221_1053533_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP046003.1_1053551_1054262_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP046003.1_1054261_1054741_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP046003.1_1054737_1055787_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP046003.1_1055767_1056529_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	3	1588694-1588811	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|62aa|up_9|NZ_CP046003.1_1577979_1578165_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP046003.1_1578177_1579077_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP046003.1_1579269_1580460_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP046003.1_1580456_1581716_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP046003.1_1581705_1583334_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP046003.1_1583606_1584965_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP046003.1_1584969_1586046_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP046003.1_1586508_1587159_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP046003.1_1587212_1587467_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP046003.1_1587466_1588597_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP046003.1_1588830_1591116_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP046003.1_1591811_1595564_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP046003.1_1595691_1596414_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP046003.1_1596560_1599188_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP046003.1_1599336_1601025_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP046003.1_1601021_1601645_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP046003.1_1604156_1605806_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP046003.1_1605810_1606587_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP046003.1_1606660_1607845_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP046003.1_1607875_1609198_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	4	2269248-2269371	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA|30aa|down_7|NZ_CP046003.1_2278267_2278357_+	NA|471aa|up_9|NZ_CP046003.1_2258702_2260115_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP046003.1_2260671_2260881_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP046003.1_2261335_2261962_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP046003.1_2261982_2264085_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP046003.1_2264088_2264736_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP046003.1_2264799_2265468_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP046003.1_2265464_2266250_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP046003.1_2266253_2267066_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP046003.1_2267077_2268682_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP046003.1_2268807_2269113_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP046003.1_2269685_2270942_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP046003.1_2270982_2272356_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP046003.1_2272570_2273212_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP046003.1_2273251_2274400_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP046003.1_2274690_2275902_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP046003.1_2276014_2276947_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP046003.1_2276943_2277969_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP046003.1_2278267_2278357_+	NA	NA|390aa|down_8|NZ_CP046003.1_2278522_2279692_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP046003.1_2279926_2280508_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	5	2908495-2908586	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|61aa|up_9|NZ_CP046003.1_2897573_2897756_-,NA	NA|61aa|up_9|NZ_CP046003.1_2897573_2897756_-	NA	NA|1321aa|up_8|NZ_CP046003.1_2897834_2901797_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP046003.1_2901836_2902475_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP046003.1_2902762_2903854_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP046003.1_2903853_2904546_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP046003.1_2904557_2904944_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP046003.1_2904951_2905752_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP046003.1_2905761_2906352_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP046003.1_2906362_2906857_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP046003.1_2906877_2908206_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP046003.1_2909009_2909606_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP046003.1_2909626_2909854_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP046003.1_2909891_2911133_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP046003.1_2911425_2912682_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP046003.1_2912942_2913863_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP046003.1_2913862_2914168_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP046003.1_2914319_2914919_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP046003.1_2914915_2917462_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP046003.1_2917461_2918634_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP046003.1_2918763_2919456_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	6	3170787-3170931	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|330aa|up_9|NZ_CP046003.1_3158685_3159675_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP046003.1_3160071_3160980_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP046003.1_3161171_3163193_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP046003.1_3163771_3164449_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP046003.1_3164441_3165197_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP046003.1_3165183_3166338_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP046003.1_3166334_3167375_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP046003.1_3167461_3168751_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP046003.1_3168809_3169286_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP046003.1_3169437_3170721_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP046003.1_3170954_3173216_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP046003.1_3173398_3174832_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP046003.1_3174907_3175960_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP046003.1_3176143_3177097_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP046003.1_3177137_3178133_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP046003.1_3178287_3179106_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP046003.1_3179106_3180165_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP046003.1_3180167_3180857_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP046003.1_3180856_3181630_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP046003.1_3181796_3181946_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	7	3391845-3391941	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|231aa|up_9|NZ_CP046003.1_3383640_3384333_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP046003.1_3384552_3385095_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP046003.1_3385565_3386432_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP046003.1_3386433_3386646_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP046003.1_3386753_3387275_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP046003.1_3387310_3388696_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP046003.1_3388869_3389364_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP046003.1_3389366_3390089_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP046003.1_3390206_3390716_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP046003.1_3390712_3391780_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP046003.1_3391974_3392868_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP046003.1_3392864_3393680_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|407aa|down_2|NZ_CP046003.1_3393729_3394950_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP046003.1_3394959_3396627_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP046003.1_3396943_3397993_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP046003.1_3398014_3399250_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP046003.1_3399260_3400046_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP046003.1_3400273_3401419_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP046003.1_3401440_3402742_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP046003.1_3402798_3404160_-	PRK08044, PRK08044, allantoinase AllB
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	8	3930099-3930233	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA	50	1	1	3930149-3930183	NZ_CP046003.1_3993326-3993292	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA|53aa|down_4|NZ_CP046003.1_3937517_3937676_-	NA|393aa|up_9|NZ_CP046003.1_3918082_3919261_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP046003.1_3919362_3919494_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP046003.1_3919582_3921238_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP046003.1_3921401_3922385_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP046003.1_3922360_3923971_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP046003.1_3923954_3924653_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP046003.1_3924766_3925531_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP046003.1_3925616_3926495_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP046003.1_3926833_3928534_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP046003.1_3928544_3930047_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP046003.1_3930246_3930942_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP046003.1_3931016_3933368_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP046003.1_3933532_3936439_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP046003.1_3936450_3937110_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|53aa|down_4|NZ_CP046003.1_3937517_3937676_-	NA	NA|272aa|down_5|NZ_CP046003.1_3938633_3939449_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|NZ_CP046003.1_3939703_3942058_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP046003.1_3942110_3943397_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP046003.1_3943396_3944386_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP046003.1_3944382_3945204_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	9	3954500-3954635	3	PILER-CR	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|126aa|up_9|NZ_CP046003.1_3945206_3945584_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP046003.1_3945590_3946433_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP046003.1_3946510_3946990_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP046003.1_3947181_3949044_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP046003.1_3949036_3949567_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP046003.1_3949674_3951006_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP046003.1_3951064_3951352_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP046003.1_3951348_3952635_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP046003.1_3952685_3953627_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP046003.1_3953641_3954412_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP046003.1_3954884_3956399_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP046003.1_3956429_3957572_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP046003.1_3957700_3958918_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP046003.1_3958991_3960545_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP046003.1_3960653_3961439_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP046003.1_3961444_3962035_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP046003.1_3962243_3962639_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP046003.1_3962900_3966122_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP046003.1_3966139_3967288_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP046003.1_3967743_3968565_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009671085.1_ASM967108v1	NZ_CP046003	Escherichia coli strain 1916D6 chromosome, complete genome	10	3962073-3962214	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|96aa|up_9|NZ_CP046003.1_3951064_3951352_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP046003.1_3951348_3952635_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP046003.1_3952685_3953627_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP046003.1_3953641_3954412_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP046003.1_3954884_3956399_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP046003.1_3956429_3957572_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP046003.1_3957700_3958918_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP046003.1_3958991_3960545_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP046003.1_3960653_3961439_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP046003.1_3961444_3962035_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP046003.1_3962243_3962639_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP046003.1_3962900_3966122_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP046003.1_3966139_3967288_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP046003.1_3967743_3968565_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP046003.1_3968731_3969646_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP046003.1_3969711_3970662_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP046003.1_3970663_3971113_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP046003.1_3971237_3971732_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP046003.1_3971731_3974548_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP046003.1_3974590_3975532_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_009671085.1_ASM967108v1	NZ_CP046001	Escherichia coli strain 1916D6 plasmid p1916D6-1, complete sequence	1	49946-50065	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	1	1	49989-50022	NZ_CP046002.1_35370-35337	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|86aa|up_2|NZ_CP046001.1_47386_47644_-,NA|119aa|down_1|NZ_CP046001.1_51776_52133_+,NA|326aa|down_2|NZ_CP046001.1_52129_53107_-,NA|94aa|down_3|NZ_CP046001.1_53131_53413_-,NA|28aa|down_6|NZ_CP046001.1_55352_55436_-	NA|118aa|up_9|NZ_CP046001.1_37781_38135_+	PRK09838, PRK09838, periplasmic copper-binding protein; Provisional	NA|431aa|up_8|NZ_CP046001.1_38248_39541_+	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional	NA|1049aa|up_7|NZ_CP046001.1_39551_42698_+	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|147aa|up_6|NZ_CP046001.1_42784_43225_+	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|826aa|up_5|NZ_CP046001.1_43322_45800_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|66aa|up_4|NZ_CP046001.1_45840_46038_+	pfam11666, DUF2933, Protein of unknown function (DUF2933)	NA|308aa|up_3|NZ_CP046001.1_46426_47350_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|up_2|NZ_CP046001.1_47386_47644_-	NA	NA|94aa|up_1|NZ_CP046001.1_48561_48843_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP046001.1_48832_49084_-	PRK02854, PRK02854, primosomal protein DnaT	NA|279aa|down_0|NZ_CP046001.1_50317_51154_+	pfam01051, Rep_3, Initiator Replication protein	NA|119aa|down_1|NZ_CP046001.1_51776_52133_+	NA	NA|326aa|down_2|NZ_CP046001.1_52129_53107_-	NA	NA|94aa|down_3|NZ_CP046001.1_53131_53413_-	NA	NA|221aa|down_4|NZ_CP046001.1_53510_54173_-	PHA02518, PHA02518, ParA-like protein; Provisional	NA|215aa|down_5|NZ_CP046001.1_54553_55198_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|28aa|down_6|NZ_CP046001.1_55352_55436_-	NA	NA|479aa|down_7|NZ_CP046001.1_56907_58344_-	pfam03917, GSH_synth_ATP, Eukaryotic glutathione synthase, ATP binding domain	NA|235aa|down_8|NZ_CP046001.1_58610_59315_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|145aa|down_9|NZ_CP046001.1_60312_60747_-	PRK13752, PRK13752, mercuric resistance operon transcriptional regulator MerR
