The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP034177	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4724806	1860518	1869689	4724806	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569168.1|1860518_1861466_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
WP_000824854.1|1861449_1862181_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1862161_1862269_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1862328_1863060_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1863282_1864968_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1864964_1865684_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1865730_1866198_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1866254_1866785_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1866956_1867415_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195334.1|1867655_1869689_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
NZ_CP034177	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4724806	2036384	2047000	4724806		Morganella_phage(25.0%)	12	NA	NA
WP_017465538.1|2036384_2036858_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	76.6	1.6e-38
WP_001736108.1|2037504_2037795_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	49.1	3.0e-08
WP_017465540.1|2038166_2038964_-	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001532308.1|2039444_2039606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394197.1|2039732_2040152_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_017465541.1|2040154_2041423_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
WP_000208509.1|2041877_2042090_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|2042100_2042289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020839256.1|2042548_2043760_-	porin	NA	Q1MVN1	Enterobacteria_phage	56.5	3.4e-109
WP_020839257.1|2044409_2044721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017441839.1|2044800_2045496_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_001157322.1|2045569_2047000_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 3
NZ_CP034177	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4724806	2956691	3057634	4724806	holin,terminase,protease,transposase,capsid,tail,lysis,head,portal,integrase,tRNA	Enterobacteria_phage(32.69%)	98	2982151:2982167	3062175:3062191
WP_020839432.1|2956691_2957372_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.5	3.4e-82
WP_000374046.1|2957990_2958650_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2958736_2959066_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2959062_2959344_-	acylphosphatase	NA	NA	NA	NA	NA
WP_017465795.1|2959392_2960172_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000859416.1|2960197_2960746_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000140480.1|2960960_2962172_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2962229_2962547_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_001537782.1|2962591_2963005_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2963178_2963841_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2963935_2964394_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_023193194.1|2964429_2966484_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.3	3.2e-19
WP_001261222.1|2966607_2967054_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950869.1|2967072_2969226_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202375.1|2969212_2969818_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|2970034_2970544_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_023193195.1|2970900_2971953_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877172.1|2972024_2972477_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156448.1|2972662_2974423_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2974491_2975010_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001537784.1|2975109_2975277_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2975532_2976096_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|2976092_2977733_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333153.1|2977737_2978991_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053044.1|2979005_2980913_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_020839434.1|2980925_2983034_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
2982151:2982167	attL	CTCAGTTGCGCCACATC	NA	NA	NA	NA
WP_000224075.1|2983132_2984242_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2984238_2984781_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291723.1|2984946_2985957_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_020839435.1|2986164_2988777_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	2.2e-20
WP_000497440.1|2989203_2989410_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_001536069.1|2989885_2990686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010835411.1|2991253_2992744_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.6	1.6e-254
WP_000143168.1|2993573_2994155_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.3e-94
WP_023193196.1|2994154_2996650_-|tail	Gifsy-2 prophage tail fiber protein	tail	E5G6P0	Salmonella_phage	76.1	7.3e-159
WP_000178849.1|2996703_2996946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514902.1|2996984_3000347_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.5	0.0e+00
WP_001750110.1|3000408_3001056_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	1.6e-89
WP_000662738.1|3000953_3001691_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.2	9.8e-128
WP_001152686.1|3001697_3002396_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.6e-103
WP_000447370.1|3002405_3002735_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
WP_000372075.1|3002737_3005833_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.7	4.8e-277
WP_010989052.1|3005804_3006143_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|3006139_3006535_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|3006585_3007332_-|tail	tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|3007339_3007741_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000677089.1|3007737_3008316_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000817265.1|3008424_3009555_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	98.1	4.0e-213
WP_000083292.1|3009587_3009971_-|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.2e-28
WP_000201486.1|3009981_3010341_-	DNA packaging protein	NA	NA	NA	NA	NA
WP_000522566.1|3010398_3011427_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|3011481_3011829_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189495.1|3011841_3013338_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.9	3.3e-98
WP_000831820.1|3013327_3014908_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	1.2e-188
WP_000201416.1|3014904_3015108_-|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	70.8	2.1e-16
WP_000623086.1|3015091_3017023_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.4	2.0e-257
WP_001102153.1|3016994_3017540_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669693.1|3017825_3018227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001533543.1|3018462_3018915_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000984587.1|3018932_3019385_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	5.1e-79
WP_001574216.1|3019368_3019698_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110788.1|3019973_3020660_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM2	Phage_Gifsy-1	98.7	5.1e-131
WP_000798706.1|3021020_3021470_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|3021605_3021731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839436.1|3022129_3022927_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|3022916_3023063_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_000784707.1|3023059_3023287_-	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	76.8	6.6e-19
WP_000940758.1|3023283_3023883_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	6.1e-96
WP_024135617.1|3023946_3024252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100148602.1|3024471_3024852_-	T3SS effector NleG family protein	NA	B6DZB9	Enterobacteria_phage	51.5	7.5e-23
WP_000089413.1|3025392_3025788_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	39.3	2.0e-18
WP_000788952.1|3025805_3026558_-	ATP-binding protein	NA	A0A088CBP4	Shigella_phage	77.0	1.7e-103
WP_020839439.1|3026564_3027440_-	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.5	1.2e-31
WP_001669257.1|3027484_3027979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033909.1|3027965_3028220_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
WP_001224472.1|3028316_3028742_+	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
WP_024135615.1|3029185_3029365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613375.1|3029795_3030080_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
WP_000799631.1|3030154_3030490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000023724.1|3030619_3033799_+	DNA breaking-rejoining protein	NA	H6WRX1	Salmonella_phage	68.2	0.0e+00
WP_077906096.1|3033761_3034919_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	98.7	6.7e-216
WP_001237031.1|3034961_3035201_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_000065276.1|3035241_3035490_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262314.1|3035536_3036829_+|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.5	1.3e-252
WP_000191404.1|3037023_3038226_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_020839440.1|3038306_3039740_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000544857.1|3039985_3041200_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000762343.1|3041517_3041979_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000117867.1|3042179_3043580_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_020839441.1|3044185_3045277_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.5	2.8e-99
WP_000462653.1|3045461_3046652_+	aspartate transaminase	NA	NA	NA	NA	NA
WP_001109471.1|3046713_3047361_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000357052.1|3047388_3047937_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_020839442.1|3048196_3050020_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_017440920.1|3050364_3054831_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000060025.1|3054830_3055535_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_001288828.1|3055515_3056838_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_001154028.1|3056830_3057634_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
3062175:3062191	attR	CTCAGTTGCGCCACATC	NA	NA	NA	NA
>prophage 4
NZ_CP034177	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4724806	4188797	4199471	4724806	integrase	Enterobacteria_phage(60.0%)	13	4194367:4194383	4203035:4203051
WP_020839650.1|4188797_4191131_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.3	0.0e+00
WP_000743150.1|4191145_4191466_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001604623.1|4191462_4191690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839651.1|4191686_4192238_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	71.3	1.1e-35
WP_000556587.1|4192234_4192501_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
WP_020839652.1|4193038_4193776_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	65.7	3.1e-81
WP_000984205.1|4193772_4194018_+	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	77.8	1.6e-31
WP_020839654.1|4194034_4194601_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	2.6e-56
4194367:4194383	attL	GCCCGCGATGATAAAAA	NA	NA	NA	NA
WP_020839655.1|4194820_4195384_-	type II restriction endonuclease PvuII	NA	A0A1B0UXL9	Roseobacter_phage	42.9	5.5e-30
WP_010376679.1|4195380_4195617_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000970946.1|4195672_4196668_+	site-specific DNA-methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	3.5e-19
WP_020839656.1|4196721_4197981_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	41.2	3.7e-74
WP_000152566.1|4198451_4199471_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	1.7e-42
4203035:4203051	attR	TTTTTATCATCGCGGGC	NA	NA	NA	NA
>prophage 1
NZ_CP034178	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 plasmid unnamed, complete sequence	81814	47490	59182	81814	transposase,integrase	Rhodococcus_phage(12.5%)	12	41296:41309	59216:59229
41296:41309	attL	TCATGGTTTTTCCC	NA	NA	NA	NA
WP_020833575.1|47490_47997_-	antirestriction protein	NA	A0A1I9S7Y0	Rhodococcus_phage	28.9	1.1e-08
WP_020833576.1|48402_49182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020833577.1|49236_49656_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_020833578.1|49666_49888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020833579.1|49887_50565_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	37.4	1.5e-29
WP_020833580.1|50924_51596_+	hypothetical protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	8.2e-81
WP_020833581.1|52198_53473_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	1.3e-156
WP_020833582.1|53554_54529_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	8.8e-84
WP_000427674.1|54528_55734_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.6	1.4e-163
WP_001749329.1|56422_56677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000728920.1|57307_58249_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.0	1.4e-73
WP_020833584.1|58399_59182_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	90.2	1.7e-50
59216:59229	attR	TCATGGTTTTTCCC	NA	NA	NA	NA
