assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009665395.1_ASM966539v1	NZ_CP035697	Vibrio cincinnatiensis strain 2409-02 chromosome 1, complete sequence	1	402237-402476	1	PILER-CR	no	WYL	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	Unclear	AAATTCCAAGTTAGGATCCTAACCAAGAATGAACATCG	38	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	NA|164aa|up_2|NZ_CP035697.1_398601_399093_+,NA|96aa|up_0|NZ_CP035697.1_401587_401875_-,NA|142aa|down_5|NZ_CP035697.1_407988_408414_-	NA|815aa|up_9|NZ_CP035697.1_387513_389958_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|429aa|up_8|NZ_CP035697.1_390014_391301_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|442aa|up_7|NZ_CP035697.1_391304_392630_+	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|497aa|up_6|NZ_CP035697.1_392771_394262_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|581aa|up_5|NZ_CP035697.1_394261_396004_+	cd17515, RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to MjaXIP/S	WYL|301aa|up_4|NZ_CP035697.1_396268_397171_-	pfam13280, WYL, WYL domain	NA|419aa|up_3|NZ_CP035697.1_397344_398601_+	cd05400, NT_2-5OAS_ClassI-CCAase, Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme	NA|164aa|up_2|NZ_CP035697.1_398601_399093_+	NA	NA|374aa|up_1|NZ_CP035697.1_399092_400214_+	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|96aa|up_0|NZ_CP035697.1_401587_401875_-	NA	NA|180aa|down_0|NZ_CP035697.1_402663_403203_+	COG5340, COG5340, Predicted transcriptional regulator [Transcription]	NA|237aa|down_1|NZ_CP035697.1_404212_404923_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|402aa|down_2|NZ_CP035697.1_404924_406130_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|384aa|down_3|NZ_CP035697.1_406126_407278_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|203aa|down_4|NZ_CP035697.1_407274_407883_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|down_5|NZ_CP035697.1_407988_408414_-	NA	NA|198aa|down_6|NZ_CP035697.1_408602_409196_-	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio	NA|129aa|down_7|NZ_CP035697.1_409596_409983_+	COG4190, COG4190, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP035697.1_410184_411732_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|118aa|down_9|NZ_CP035697.1_411791_412145_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein
GCF_009665395.1_ASM966539v1	NZ_CP035697	Vibrio cincinnatiensis strain 2409-02 chromosome 1, complete sequence	2	506405-506619	2	PILER-CR	no		WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	Orphan	TGTGCCTCCTTAGCTCAGTAGGTAGAGCAACGGACTGATAATCCG	45	1	1	506450-506486	NZ_CP035697.1_645650-645614	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	NA,NA	NA|186aa|up_9|NZ_CP035697.1_498454_499012_+	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|96aa|up_8|NZ_CP035697.1_499011_499299_+	PRK05090, PRK05090, hypothetical protein; Validated	NA|144aa|up_7|NZ_CP035697.1_499340_499772_+	pfam14467, DUF4426, Domain of unknown function (DUF4426)	NA|201aa|up_6|NZ_CP035697.1_499796_500399_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|391aa|up_5|NZ_CP035697.1_500408_501581_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|307aa|up_4|NZ_CP035697.1_501613_502534_-	PRK00971, PRK00971, glutaminase; Provisional	NA|240aa|up_3|NZ_CP035697.1_502668_503388_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|352aa|up_2|NZ_CP035697.1_503621_504677_+	PRK10880, PRK10880, adenine DNA glycosylase	NA|92aa|up_1|NZ_CP035697.1_504697_504973_+	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|377aa|up_0|NZ_CP035697.1_505043_506174_+	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC	NA|545aa|down_0|NZ_CP035697.1_506871_508506_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|290aa|down_1|NZ_CP035697.1_509395_510265_-	PRK09430, djlA, co-chaperone DjlA	NA|784aa|down_2|NZ_CP035697.1_510412_512764_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|432aa|down_3|NZ_CP035697.1_512810_514106_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|331aa|down_4|NZ_CP035697.1_514095_515088_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|269aa|down_5|NZ_CP035697.1_515100_515907_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|127aa|down_6|NZ_CP035697.1_515971_516352_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|167aa|down_7|NZ_CP035697.1_517243_517744_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|163aa|down_8|NZ_CP035697.1_517781_518270_-	PRK09917, PRK09917, threonine/serine exporter	NA|254aa|down_9|NZ_CP035697.1_518257_519019_-	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]
GCF_009665395.1_ASM966539v1	NZ_CP035697	Vibrio cincinnatiensis strain 2409-02 chromosome 1, complete sequence	3	1851724-1852472	1,1,3	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	Type I-F	GTTCACTGCCGCATAGGCAGCTTAGAAA,GTTCACTGCCGCATAGGCAGCTTAGAAA,GTTCACTGCCGCATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,12,8	12	TypeI-F	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	NA,NA	NA|66aa|up_9|NZ_CP035697.1_1839346_1839544_+	cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP	NA|182aa|up_8|NZ_CP035697.1_1839833_1840379_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|110aa|up_7|NZ_CP035697.1_1840475_1840805_-	cd14241, PAD, Phenolic Acid Decarboxylase	NA|298aa|up_6|NZ_CP035697.1_1841851_1842745_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	cas1|330aa|up_5|NZ_CP035697.1_1843211_1844201_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1130aa|up_4|NZ_CP035697.1_1844197_1847587_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|451aa|up_3|NZ_CP035697.1_1847571_1848924_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|331aa|up_2|NZ_CP035697.1_1848925_1849918_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|328aa|up_1|NZ_CP035697.1_1849936_1850920_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|213aa|up_0|NZ_CP035697.1_1850929_1851568_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|677aa|down_0|NZ_CP035697.1_1853316_1855347_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|455aa|down_1|NZ_CP035697.1_1855678_1857043_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|113aa|down_2|NZ_CP035697.1_1857049_1857388_+	pfam01627, Hpt, Hpt domain	NA|297aa|down_3|NZ_CP035697.1_1857380_1858271_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|335aa|down_4|NZ_CP035697.1_1858559_1859564_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|171aa|down_5|NZ_CP035697.1_1859616_1860129_+	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|160aa|down_6|NZ_CP035697.1_1860140_1860620_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|82aa|down_7|NZ_CP035697.1_1860616_1860862_+	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|150aa|down_8|NZ_CP035697.1_1860867_1861317_+	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|139aa|down_9|NZ_CP035697.1_1861470_1861887_+	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria
GCF_009665395.1_ASM966539v1	NZ_CP035698	Vibrio cincinnatiensis strain 2409-02 chromosome 2, complete sequence	1	421770-422398	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	RT	DEDDh,RT	Unclear	GTTCACTGCCGCATAGGCAGCTTAGAAA,TTTCTAAGCTGCCTATGCGGCAGTGAAC,TTTCTAAGCTGCCTATGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	10,10,10	10	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	NA|338aa|up_7|NZ_CP035698.1_413637_414651_-,NA|162aa|up_6|NZ_CP035698.1_415290_415776_-,NA|293aa|up_5|NZ_CP035698.1_415775_416654_-,NA|84aa|up_3|NZ_CP035698.1_418335_418587_-,NA|324aa|up_1|NZ_CP035698.1_418906_419878_-,NA|231aa|down_0|NZ_CP035698.1_422670_423363_-,NA|191aa|down_3|NZ_CP035698.1_426086_426659_+,NA|717aa|down_4|NZ_CP035698.1_426956_429107_-,NA|84aa|down_7|NZ_CP035698.1_432330_432582_-,NA|324aa|down_9|NZ_CP035698.1_432901_433873_-	NA|578aa|up_9|NZ_CP035698.1_410861_412595_+	pfam03235, DUF262, Protein of unknown function DUF262	RT|314aa|up_8|NZ_CP035698.1_412712_413654_-	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|338aa|up_7|NZ_CP035698.1_413637_414651_-	NA	NA|162aa|up_6|NZ_CP035698.1_415290_415776_-	NA	NA|293aa|up_5|NZ_CP035698.1_415775_416654_-	NA	NA|523aa|up_4|NZ_CP035698.1_416770_418339_-	pfam05840, Phage_GPA, Bacteriophage replication gene A protein (GPA)	NA|84aa|up_3|NZ_CP035698.1_418335_418587_-	NA	NA|79aa|up_2|NZ_CP035698.1_418579_418816_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|324aa|up_1|NZ_CP035698.1_418906_419878_-	NA	NA|402aa|up_0|NZ_CP035698.1_420250_421456_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|231aa|down_0|NZ_CP035698.1_422670_423363_-	NA	NA|198aa|down_1|NZ_CP035698.1_423995_424589_-	pfam02661, Fic, Fic/DOC family	NA|236aa|down_2|NZ_CP035698.1_425382_426090_+	pfam14412, AHH, A nuclease family of the HNH/ENDO VII superfamily with conserved AHH	NA|191aa|down_3|NZ_CP035698.1_426086_426659_+	NA	NA|717aa|down_4|NZ_CP035698.1_426956_429107_-	NA	NA|384aa|down_5|NZ_CP035698.1_429368_430519_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|516aa|down_6|NZ_CP035698.1_430786_432334_-	pfam05840, Phage_GPA, Bacteriophage replication gene A protein (GPA)	NA|84aa|down_7|NZ_CP035698.1_432330_432582_-	NA	NA|79aa|down_8|NZ_CP035698.1_432574_432811_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|324aa|down_9|NZ_CP035698.1_432901_433873_-	NA
GCF_009665395.1_ASM966539v1	NZ_CP035698	Vibrio cincinnatiensis strain 2409-02 chromosome 2, complete sequence	2	501857-502245	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,RT	Orphan	GTTCACTGCCGCATAGGCAGCTTAGAAA,TTTCTAAGCTGCCTATGCGGCAGTGAAC,TTTCTAAGCTGCCTATGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,6,6	6	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	NA|127aa|up_5|NZ_CP035698.1_495943_496324_-,NA|77aa|up_1|NZ_CP035698.1_499468_499699_-,NA|97aa|down_1|NZ_CP035698.1_502568_502859_-,NA|681aa|down_4|NZ_CP035698.1_505242_507285_+,NA|84aa|down_8|NZ_CP035698.1_513583_513835_-	NA|175aa|up_9|NZ_CP035698.1_494078_494603_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|138aa|up_8|NZ_CP035698.1_494746_495160_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|47aa|up_7|NZ_CP035698.1_495211_495352_-	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|159aa|up_6|NZ_CP035698.1_495318_495795_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|127aa|up_5|NZ_CP035698.1_495943_496324_-	NA	NA|140aa|up_4|NZ_CP035698.1_496479_496899_-	pfam07007, LprI, Lysozyme inhibitor LprI	NA|173aa|up_3|NZ_CP035698.1_497052_497571_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|298aa|up_2|NZ_CP035698.1_497631_498525_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|77aa|up_1|NZ_CP035698.1_499468_499699_-	NA	NA|156aa|up_0|NZ_CP035698.1_499700_500168_-	pfam18648, ADPRTs_Tse2, Tse2 ADP-ribosyltransferase toxins	NA|37aa|down_0|NZ_CP035698.1_502402_502513_-	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|97aa|down_1|NZ_CP035698.1_502568_502859_-	NA	NA|388aa|down_2|NZ_CP035698.1_503161_504325_+	cd14738, PAAR_2, proline-alanine-alanine-arginine (PAAR) domain	NA|170aa|down_3|NZ_CP035698.1_504321_504831_+	PRK07667, PRK07667, uridine kinase; Provisional	NA|681aa|down_4|NZ_CP035698.1_505242_507285_+	NA	NA|771aa|down_5|NZ_CP035698.1_507920_510233_+	COG4694, COG4694, Uncharacterized protein conserved in bacteria [Function unknown]	NA|429aa|down_6|NZ_CP035698.1_510359_511646_-	pfam08808, RES, RES domain	NA|516aa|down_7|NZ_CP035698.1_512039_513587_-	pfam05840, Phage_GPA, Bacteriophage replication gene A protein (GPA)	NA|84aa|down_8|NZ_CP035698.1_513583_513835_-	NA	NA|79aa|down_9|NZ_CP035698.1_513827_514064_-	pfam12728, HTH_17, Helix-turn-helix domain
GCF_009665395.1_ASM966539v1	NZ_CP035698	Vibrio cincinnatiensis strain 2409-02 chromosome 2, complete sequence	3	555929-556557	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,RT	Orphan	GTTCACTGCCGCATAGGCAGCTTAGAAA,TTTCTAAGCTGCCTATGCGGCAGTGAAC,TTTCTAAGCTGCCTATGCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	10,10,10	10	Orphan	WYL,csa3,DEDDh,cas3,RT,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,csx1	NA|131aa|up_7|NZ_CP035698.1_545780_546173_-,NA|168aa|up_6|NZ_CP035698.1_546325_546829_-,NA|398aa|up_5|NZ_CP035698.1_549047_550241_-,NA|135aa|up_4|NZ_CP035698.1_550233_550638_-,NA|170aa|up_2|NZ_CP035698.1_551775_552285_-,NA|124aa|down_0|NZ_CP035698.1_556829_557201_-,NA|277aa|down_1|NZ_CP035698.1_557473_558304_+,NA|198aa|down_4|NZ_CP035698.1_560196_560790_-,NA|171aa|down_5|NZ_CP035698.1_561926_562439_-,NA|172aa|down_6|NZ_CP035698.1_562633_563149_-	NA|81aa|up_9|NZ_CP035698.1_544605_544848_+	pfam03693, ParD_antitoxin, Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	NA|100aa|up_8|NZ_CP035698.1_544844_545144_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|131aa|up_7|NZ_CP035698.1_545780_546173_-	NA	NA|168aa|up_6|NZ_CP035698.1_546325_546829_-	NA	NA|398aa|up_5|NZ_CP035698.1_549047_550241_-	NA	NA|135aa|up_4|NZ_CP035698.1_550233_550638_-	NA	NA|37aa|up_3|NZ_CP035698.1_551190_551301_-	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|170aa|up_2|NZ_CP035698.1_551775_552285_-	NA	NA|37aa|up_1|NZ_CP035698.1_553333_553444_-	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|199aa|up_0|NZ_CP035698.1_553452_554049_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|124aa|down_0|NZ_CP035698.1_556829_557201_-	NA	NA|277aa|down_1|NZ_CP035698.1_557473_558304_+	NA	NA|378aa|down_2|NZ_CP035698.1_558360_559494_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|47aa|down_3|NZ_CP035698.1_559634_559775_-	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|198aa|down_4|NZ_CP035698.1_560196_560790_-	NA	NA|171aa|down_5|NZ_CP035698.1_561926_562439_-	NA	NA|172aa|down_6|NZ_CP035698.1_562633_563149_-	NA	NA|221aa|down_7|NZ_CP035698.1_564963_565626_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|129aa|down_8|NZ_CP035698.1_566251_566638_-	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|298aa|down_9|NZ_CP035698.1_568394_569288_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
