assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	1	333903-334701	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP045962.1_333418_333601_-,NA	NA|398aa|up_9|NZ_CP045962.1_323596_324790_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP045962.1_324825_326508_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP045962.1_326524_328720_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP045962.1_328833_329967_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP045962.1_329963_330584_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP045962.1_330680_331262_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP045962.1_331191_331917_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP045962.1_332006_332927_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP045962.1_332966_333395_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP045962.1_333418_333601_-	NA	NA|903aa|down_0|NZ_CP045962.1_336775_339484_-	pfam00934, PE, PE family	NA|929aa|down_1|NZ_CP045962.1_339733_342520_-	pfam00934, PE, PE family	NA|537aa|down_2|NZ_CP045962.1_342810_344421_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_3|NZ_CP045962.1_344444_345353_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_4|NZ_CP045962.1_345576_347472_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_5|NZ_CP045962.1_347468_349085_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_6|NZ_CP045962.1_349081_353074_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_7|NZ_CP045962.1_353070_353379_+	pfam00934, PE, PE family	NA|514aa|down_8|NZ_CP045962.1_353381_354923_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_9|NZ_CP045962.1_354971_355265_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	2	369955-370653	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	370243-370284|370318-370350	NZ_CP045962.1_378259-378300|NZ_CP045962.1_377074-377106	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP045962.1_366967_367270_+,NA|161aa|down_1|NZ_CP045962.1_380048_380531_-,NA|410aa|down_5|NZ_CP045962.1_382647_383877_+	NA|262aa|up_9|NZ_CP045962.1_361617_362403_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP045962.1_362391_363195_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP045962.1_363204_364602_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|607aa|up_6|NZ_CP045962.1_364780_366601_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP045962.1_366743_366971_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP045962.1_366967_367270_+	NA	NA|74aa|up_3|NZ_CP045962.1_367317_367539_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP045962.1_367535_367961_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP045962.1_368096_368729_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP045962.1_368725_369634_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP045962.1_379389_380061_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP045962.1_380048_380531_-	NA	NA|239aa|down_2|NZ_CP045962.1_380588_381305_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP045962.1_381406_382063_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP045962.1_382132_382624_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP045962.1_382647_383877_+	NA	NA|621aa|down_6|NZ_CP045962.1_384031_385894_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP045962.1_385965_386352_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP045962.1_386354_387017_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP045962.1_387077_387962_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	3	695804-695880	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP045962.1_681488_681704_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP045962.1_681700_682108_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP045962.1_682167_682854_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP045962.1_683007_685641_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP045962.1_685663_688051_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP045962.1_688188_688911_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP045962.1_688907_689705_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP045962.1_689706_690594_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP045962.1_690599_691814_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_0|NZ_CP045962.1_691810_692842_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|517aa|down_0|NZ_CP045962.1_697015_698566_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP045962.1_698617_699010_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP045962.1_699006_699264_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP045962.1_699446_700682_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP045962.1_700932_701346_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP045962.1_701342_701579_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP045962.1_701682_702189_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP045962.1_702302_702773_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP045962.1_702816_703578_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP045962.1_703634_703946_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	4	843337-844466	2,3	CRT,CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGNGCCGGCGGGGCCGGCGG,GGCGGGGCCGGCGGGGCCGGCGGG	24,24	15	73	843541-843561|843586-843603|844285-844305|844285-844305|844285-844305|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|844384-844404|843380-843394|843380-843394|843380-843394|843380-843394|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843458-843478|843503-843517|843542-843562|843542-843562|843587-843604|843629-843652|843722-843751|843722-843751|843776-843796|843776-843796|843776-843796|843776-843796|843776-843796|843908-843928|844193-844207|844193-844207|844193-844207|844277-844306	NZ_CP045962.1_335934-335914|NZ_CP045962.1_2870075-2870058|NZ_CP045962.1_4095528-4095548|NZ_CP045962.1_1991328-1991308|NZ_CP045962.1_1992162-1992142|NZ_CP045962.1_1191278-1191258|NZ_CP045962.1_1991319-1991299|NZ_CP045962.1_2088663-2088643|NZ_CP045962.1_2803580-2803560|NZ_CP045962.1_2804639-2804619|NZ_CP045962.1_339146-339126|NZ_CP045962.1_340706-340686|NZ_CP045962.1_365185-365205|NZ_CP045962.1_840599-840619|NZ_CP045962.1_1990983-1990963|NZ_CP045962.1_2045763-2045743|NZ_CP045962.1_2087775-2087755|NZ_CP045962.1_2803826-2803806|NZ_CP045962.1_3782400-3782420|NZ_CP045962.1_334854-334834|NZ_CP045962.1_338096-338076|NZ_CP045962.1_365431-365451|NZ_CP045962.1_933703-933683|NZ_CP045962.1_1385994-1385974|NZ_CP045962.1_1659125-1659105|NZ_CP045962.1_2813548-2813528|NZ_CP045962.1_3929486-3929506|NZ_CP045962.1_256833-256819|NZ_CP045962.1_336113-336099|NZ_CP045962.1_1992236-1992222|NZ_CP045962.1_928915-928929|NZ_CP045962.1_627003-627023|NZ_CP045962.1_842115-842135|NZ_CP045962.1_1097225-1097205|NZ_CP045962.1_1659541-1659521|NZ_CP045962.1_1992152-1992132|NZ_CP045962.1_2044913-2044893|NZ_CP045962.1_2061856-2061836|NZ_CP045962.1_2952805-2952785|NZ_CP045962.1_3934145-3934165|NZ_CP045962.1_3949992-3950012|NZ_CP045962.1_132025-132045|NZ_CP045962.1_150549-150569|NZ_CP045962.1_340354-340334|NZ_CP045962.1_1216732-1216752|NZ_CP045962.1_1217914-1217934|NZ_CP045962.1_1493844-1493824|NZ_CP045962.1_1575919-1575899|NZ_CP045962.1_2045033-2045013|NZ_CP045962.1_2061667-2061647|NZ_CP045962.1_2433344-2433324|NZ_CP045962.1_2813325-2813305|NZ_CP045962.1_3158618-3158638|NZ_CP045962.1_3803357-3803377|NZ_CP045962.1_3803954-3803974|NZ_CP045962.1_4095538-4095558|NZ_CP045962.1_1323257-1323243|NZ_CP045962.1_338923-338903|NZ_CP045962.1_335933-335913|NZ_CP045962.1_2870074-2870057|NZ_CP045962.1_1858439-1858416|NZ_CP045962.1_338734-338705|NZ_CP045962.1_1991891-1991862|NZ_CP045962.1_3740243-3740223|NZ_CP045962.1_337621-337601|NZ_CP045962.1_1217434-1217454|NZ_CP045962.1_1640372-1640352|NZ_CP045962.1_1640549-1640529|NZ_CP045962.1_338644-338624|NZ_CP045962.1_168736-168750|NZ_CP045962.1_341332-341318|NZ_CP045962.1_341605-341591|NZ_CP045962.1_2433002-2432973	NA:NA	20,24	24	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_9|NZ_CP045962.1_834282_834495_+,NA|176aa|up_6|NZ_CP045962.1_836359_836887_+,NA|186aa|up_4|NZ_CP045962.1_838412_838970_-,NA|46aa|down_2|NZ_CP045962.1_846650_846788_-,NA|53aa|down_3|NZ_CP045962.1_846773_846932_+,NA|82aa|down_4|NZ_CP045962.1_846946_847192_+	NA|71aa|up_9|NZ_CP045962.1_834282_834495_+	NA	NA|183aa|up_8|NZ_CP045962.1_834643_835192_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|283aa|up_7|NZ_CP045962.1_835396_836245_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_6|NZ_CP045962.1_836359_836887_+	NA	NA|154aa|up_5|NZ_CP045962.1_837573_838035_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP045962.1_838412_838970_-	NA	NA|169aa|up_3|NZ_CP045962.1_838966_839473_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP045962.1_839585_839732_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP045962.1_839680_840208_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|785aa|up_0|NZ_CP045962.1_840227_842582_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP045962.1_845860_846118_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP045962.1_846141_846570_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP045962.1_846650_846788_-	NA	NA|53aa|down_3|NZ_CP045962.1_846773_846932_+	NA	NA|82aa|down_4|NZ_CP045962.1_846946_847192_+	NA	NA|295aa|down_5|NZ_CP045962.1_847260_848145_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_6|NZ_CP045962.1_848155_849328_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_7|NZ_CP045962.1_849334_850867_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_8|NZ_CP045962.1_851072_852827_+	pfam00934, PE, PE family	NA|646aa|down_9|NZ_CP045962.1_853016_854954_-	pfam00823, PPE, PPE family
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	5	844619-845722	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGGGCCGGCGGGGCCGGCGGG	24	9	28	844712-844744|844769-844786|844811-844831|844811-844831|844856-844876|844856-844876|844940-844960|844940-844960|844985-845005|844985-845005|844985-845005|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845075-845095|845288-845305|845468-845488|845468-845488	NZ_CP045962.1_334787-334755|NZ_CP045962.1_482456-482439|NZ_CP045962.1_340543-340523|NZ_CP045962.1_1991510-1991490|NZ_CP045962.1_1216768-1216788|NZ_CP045962.1_1575757-1575737|NZ_CP045962.1_1216768-1216788|NZ_CP045962.1_1575757-1575737|NZ_CP045962.1_340354-340334|NZ_CP045962.1_3781468-3781488|NZ_CP045962.1_4095538-4095558|NZ_CP045962.1_3803606-3803626|NZ_CP045962.1_335564-335544|NZ_CP045962.1_335651-335631|NZ_CP045962.1_337342-337322|NZ_CP045962.1_337420-337400|NZ_CP045962.1_338635-338615|NZ_CP045962.1_341683-341663|NZ_CP045962.1_341767-341747|NZ_CP045962.1_2061667-2061647|NZ_CP045962.1_2952706-2952686|NZ_CP045962.1_3929697-3929717|NZ_CP045962.1_340282-340262|NZ_CP045962.1_841092-841112|NZ_CP045962.1_3052054-3052074|NZ_CP045962.1_1990334-1990317|NZ_CP045962.1_2432478-2432498|NZ_CP045962.1_2930936-2930916	NA	22	22	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_9|NZ_CP045962.1_834282_834495_+,NA|176aa|up_6|NZ_CP045962.1_836359_836887_+,NA|186aa|up_4|NZ_CP045962.1_838412_838970_-,NA|46aa|down_2|NZ_CP045962.1_846650_846788_-,NA|53aa|down_3|NZ_CP045962.1_846773_846932_+,NA|82aa|down_4|NZ_CP045962.1_846946_847192_+	NA|71aa|up_9|NZ_CP045962.1_834282_834495_+	NA	NA|183aa|up_8|NZ_CP045962.1_834643_835192_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|283aa|up_7|NZ_CP045962.1_835396_836245_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_6|NZ_CP045962.1_836359_836887_+	NA	NA|154aa|up_5|NZ_CP045962.1_837573_838035_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP045962.1_838412_838970_-	NA	NA|169aa|up_3|NZ_CP045962.1_838966_839473_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP045962.1_839585_839732_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP045962.1_839680_840208_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|785aa|up_0|NZ_CP045962.1_840227_842582_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP045962.1_845860_846118_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP045962.1_846141_846570_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP045962.1_846650_846788_-	NA	NA|53aa|down_3|NZ_CP045962.1_846773_846932_+	NA	NA|82aa|down_4|NZ_CP045962.1_846946_847192_+	NA	NA|295aa|down_5|NZ_CP045962.1_847260_848145_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_6|NZ_CP045962.1_848155_849328_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_7|NZ_CP045962.1_849334_850867_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_8|NZ_CP045962.1_851072_852827_+	pfam00934, PE, PE family	NA|646aa|down_9|NZ_CP045962.1_853016_854954_-	pfam00823, PPE, PPE family
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	6	930176-931207	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	2	931043-931078|931043-931078	NZ_CP045962.1_1213520-1213555|NZ_CP045962.1_678907-678872	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP045962.1_935217_935769_-,NA|81aa|down_8|NZ_CP045962.1_941232_941475_+	NA|685aa|up_9|NZ_CP045962.1_917812_919867_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP045962.1_920032_921202_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP045962.1_921289_922306_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP045962.1_922467_923109_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP045962.1_923189_924245_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP045962.1_924296_924689_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP045962.1_924746_925169_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP045962.1_925130_925421_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP045962.1_925525_926431_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP045962.1_926449_927265_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP045962.1_931476_934125_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP045962.1_934592_935237_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP045962.1_935217_935769_-	NA	NA|241aa|down_3|NZ_CP045962.1_935849_936572_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP045962.1_936642_937671_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP045962.1_938359_939130_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP045962.1_939216_940029_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP045962.1_940096_940957_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP045962.1_941232_941475_+	NA	NA|431aa|down_9|NZ_CP045962.1_941751_943044_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	7	2087898-2088152	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2087979-2087996|2087979-2087996|2088069-2088086	NZ_CP045962.1_404554-404537|NZ_CP045962.1_611096-611079|NZ_CP045962.1_3446494-3446477	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP045962.1_2087257_2087521_-,NA	NA|165aa|up_9|NZ_CP045962.1_2073607_2074102_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP045962.1_2074449_2075127_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP045962.1_2075485_2078311_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP045962.1_2078537_2079398_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP045962.1_2079438_2080305_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP045962.1_2080309_2082196_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP045962.1_2082211_2084245_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP045962.1_2084364_2086590_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP045962.1_2086865_2087261_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP045962.1_2087257_2087521_-	NA	NA|350aa|down_0|NZ_CP045962.1_2089289_2090339_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP045962.1_2090338_2091706_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP045962.1_2091879_2093316_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP045962.1_2093351_2094803_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP045962.1_2094832_2095783_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP045962.1_2095797_2096214_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP045962.1_2096491_2096914_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP045962.1_2096962_2097265_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP045962.1_2097261_2097576_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP045962.1_2097575_2099309_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	8	2169707-2169926	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP045962.1_2152126_2152597_-,NA|136aa|up_2|NZ_CP045962.1_2159621_2160029_-,NA|127aa|down_5|NZ_CP045962.1_2177442_2177823_-	NA|157aa|up_9|NZ_CP045962.1_2152126_2152597_-	NA	NA|216aa|up_8|NZ_CP045962.1_2152936_2153584_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP045962.1_2153590_2155813_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP045962.1_2155850_2156294_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP045962.1_2156407_2157001_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP045962.1_2157083_2157689_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|251aa|up_3|NZ_CP045962.1_2158891_2159644_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP045962.1_2159621_2160029_-	NA	NA|767aa|up_1|NZ_CP045962.1_2160163_2162464_+	PLN02892, PLN02892, isocitrate lyase	NA|1857aa|up_0|NZ_CP045962.1_2162633_2168204_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP045962.1_2171953_2172418_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP045962.1_2172515_2173379_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP045962.1_2173416_2174688_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP045962.1_2174959_2176075_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP045962.1_2176065_2177406_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP045962.1_2177442_2177823_-	NA	NA|621aa|down_6|NZ_CP045962.1_2177979_2179842_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP045962.1_2179849_2180329_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP045962.1_2180565_2181339_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP045962.1_2181342_2182110_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	9	3115449-3115550	6	CRISPRCasFinder	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	CCCCTCTCGGGGTTTTGGGTCTGACGAC	28	0	0	NA	NA	II-B,III-A	1	1	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_6|NZ_CP045962.1_3109933_3110188_-,NA|135aa|up_5|NZ_CP045962.1_3110335_3110740_+,NA|64aa|up_4|NZ_CP045962.1_3110736_3110928_+,NA|86aa|up_2|NZ_CP045962.1_3112514_3112772_+,NA|104aa|up_1|NZ_CP045962.1_3112876_3113188_+,NA|203aa|up_0|NZ_CP045962.1_3113607_3114216_+,NA	NA|77aa|up_9|NZ_CP045962.1_3107975_3108206_-	COG0864, NikR, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]	NA|348aa|up_8|NZ_CP045962.1_3108248_3109292_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_7|NZ_CP045962.1_3109482_3109758_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_6|NZ_CP045962.1_3109933_3110188_-	NA	NA|135aa|up_5|NZ_CP045962.1_3110335_3110740_+	NA	NA|64aa|up_4|NZ_CP045962.1_3110736_3110928_+	NA	NA|385aa|up_3|NZ_CP045962.1_3111126_3112281_+	pfam00665, rve, Integrase core domain	NA|86aa|up_2|NZ_CP045962.1_3112514_3112772_+	NA	NA|104aa|up_1|NZ_CP045962.1_3112876_3113188_+	NA	NA|203aa|up_0|NZ_CP045962.1_3113607_3114216_+	NA	NA|421aa|down_0|NZ_CP045962.1_3115647_3116909_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP045962.1_3119448_3119790_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP045962.1_3119790_3120807_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP045962.1_3120819_3121968_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP045962.1_3122063_3123191_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP045962.1_3123187_3124096_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP045962.1_3124076_3124787_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP045962.1_3124796_3125171_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP045962.1_3125167_3127606_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|NZ_CP045962.1_3127602_3128547_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	10	3116944-3119400	7,5,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	33,33,30,30	33	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP045962.1_3109933_3110188_-,NA|135aa|up_7|NZ_CP045962.1_3110335_3110740_+,NA|64aa|up_6|NZ_CP045962.1_3110736_3110928_+,NA|86aa|up_4|NZ_CP045962.1_3112514_3112772_+,NA|104aa|up_3|NZ_CP045962.1_3112876_3113188_+,NA|203aa|up_2|NZ_CP045962.1_3113607_3114216_+,NA	NA|92aa|up_9|NZ_CP045962.1_3109482_3109758_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP045962.1_3109933_3110188_-	NA	NA|135aa|up_7|NZ_CP045962.1_3110335_3110740_+	NA	NA|64aa|up_6|NZ_CP045962.1_3110736_3110928_+	NA	NA|385aa|up_5|NZ_CP045962.1_3111126_3112281_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP045962.1_3112514_3112772_+	NA	NA|104aa|up_3|NZ_CP045962.1_3112876_3113188_+	NA	NA|203aa|up_2|NZ_CP045962.1_3113607_3114216_+	NA	NA|399aa|up_1|NZ_CP045962.1_3114286_3115483_+	pfam00665, rve, Integrase core domain	NA|421aa|up_0|NZ_CP045962.1_3115647_3116909_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP045962.1_3119448_3119790_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP045962.1_3119790_3120807_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP045962.1_3120819_3121968_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP045962.1_3122063_3123191_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP045962.1_3123187_3124096_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP045962.1_3124076_3124787_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP045962.1_3124796_3125171_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP045962.1_3125167_3127606_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP045962.1_3127602_3128547_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|216aa|down_9|NZ_CP045962.1_3128724_3129372_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	11	3849448-3849537	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_7|NZ_CP045962.1_3842842_3843073_+,NA|121aa|up_6|NZ_CP045962.1_3843176_3843539_-,NA|73aa|up_2|NZ_CP045962.1_3847513_3847732_-,NA|121aa|down_0|NZ_CP045962.1_3850522_3850885_-,NA|52aa|down_2|NZ_CP045962.1_3852726_3852882_-,NA|52aa|down_3|NZ_CP045962.1_3852906_3853062_-,NA|238aa|down_6|NZ_CP045962.1_3857097_3857811_-	NA|169aa|up_9|NZ_CP045962.1_3841153_3841660_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|409aa|up_8|NZ_CP045962.1_3841656_3842883_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_7|NZ_CP045962.1_3842842_3843073_+	NA	NA|121aa|up_6|NZ_CP045962.1_3843176_3843539_-	NA	NA|177aa|up_5|NZ_CP045962.1_3843701_3844232_+	pfam00823, PPE, PPE family	NA|177aa|up_4|NZ_CP045962.1_3844498_3845029_+	pfam00823, PPE, PPE family	NA|725aa|up_3|NZ_CP045962.1_3845346_3847521_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|73aa|up_2|NZ_CP045962.1_3847513_3847732_-	NA	NA|100aa|up_1|NZ_CP045962.1_3848226_3848526_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_CP045962.1_3848611_3849154_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP045962.1_3850522_3850885_-	NA	NA|179aa|down_1|NZ_CP045962.1_3851047_3851584_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP045962.1_3852726_3852882_-	NA	NA|52aa|down_3|NZ_CP045962.1_3852906_3853062_-	NA	NA|461aa|down_4|NZ_CP045962.1_3854254_3855637_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP045962.1_3855674_3857096_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP045962.1_3857097_3857811_-	NA	NA|285aa|down_7|NZ_CP045962.1_3857821_3858676_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP045962.1_3858897_3860772_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP045962.1_3860793_3861270_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	12	3951242-3952220	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCACCGGCGGCACCGGCGGC	37	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP045962.1_3955669_3956509_+	NA|64aa|up_9|NZ_CP045962.1_3924634_3924826_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NZ_CP045962.1_3925040_3926243_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NZ_CP045962.1_3926267_3927389_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NZ_CP045962.1_3927459_3928968_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1438aa|up_5|NZ_CP045962.1_3929138_3933452_+	pfam00934, PE, PE family	NA|2127aa|up_4|NZ_CP045962.1_3933742_3940123_+	pfam00934, PE, PE family	NA|516aa|up_3|NZ_CP045962.1_3940289_3941837_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NZ_CP045962.1_3941833_3942670_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1910aa|up_1|NZ_CP045962.1_3943029_3948759_+	pfam00934, PE, PE family	NA|219aa|up_0|NZ_CP045962.1_3948887_3949544_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP045962.1_3953062_3954709_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP045962.1_3954782_3955574_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP045962.1_3955669_3956509_+	NA	NA|399aa|down_3|NZ_CP045962.1_3956563_3957760_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP045962.1_3957788_3958499_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP045962.1_3958563_3959607_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP045962.1_3959759_3960671_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP045962.1_3960686_3961751_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP045962.1_3961767_3962952_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP045962.1_3962993_3964025_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_009664875.1_ASM966487v1	NZ_CP045962	Mycobacterium tuberculosis strain AUSMDU00018547 chromosome, complete genome	13	4112227-4112315	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP045962.1_4102813_4103584_-,NA|119aa|up_3|NZ_CP045962.1_4108718_4109075_+,NA|52aa|up_2|NZ_CP045962.1_4109174_4109330_+,NA|233aa|up_0|NZ_CP045962.1_4111331_4112030_-,NA|126aa|down_6|NZ_CP045962.1_4117550_4117928_+	NA|288aa|up_9|NZ_CP045962.1_4101195_4102059_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP045962.1_4102813_4103584_-	NA	NA|549aa|up_7|NZ_CP045962.1_4103580_4105227_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP045962.1_4105223_4106087_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP045962.1_4106079_4107006_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP045962.1_4107007_4108633_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP045962.1_4108718_4109075_+	NA	NA|52aa|up_2|NZ_CP045962.1_4109174_4109330_+	NA	NA|652aa|up_1|NZ_CP045962.1_4109340_4111296_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP045962.1_4111331_4112030_-	NA	NA|173aa|down_0|NZ_CP045962.1_4112375_4112894_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP045962.1_4112894_4113878_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP045962.1_4113870_4115064_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP045962.1_4115069_4115891_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP045962.1_4116022_4116706_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP045962.1_4116705_4117443_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP045962.1_4117550_4117928_+	NA	NA|225aa|down_7|NZ_CP045962.1_4118026_4118701_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP045962.1_4118806_4119601_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP045962.1_4119607_4120063_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
