assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009664775.1_ASM966477v1	NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	1	209955-210106	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh	Unclear	CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh,cas5	NA,NA	NA|231aa|up_9|NZ_CP045972.1_197153_197846_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP045972.1_197842_199051_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP045972.1_199735_200044_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP045972.1_200163_200472_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP045972.1_200858_202232_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP045972.1_202282_203239_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP045972.1_203281_203995_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP045972.1_204265_205219_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP045972.1_205460_207050_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP045972.1_207380_208913_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP045972.1_211066_211936_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP045972.1_212007_212331_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP045972.1_212465_212927_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP045972.1_212977_213310_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP045972.1_213376_214051_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP045972.1_214127_215069_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP045972.1_215363_215987_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP045972.1_216076_216661_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP045972.1_216767_217328_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP045972.1_217442_220982_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_009664775.1_ASM966477v1	NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	2	497235-497819	1	CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,cas5	NA,NA|158aa|down_0|NZ_CP045972.1_498712_499186_+,NA|162aa|down_1|NZ_CP045972.1_499205_499691_+,NA|89aa|down_3|NZ_CP045972.1_500099_500366_+,NA|55aa|down_4|NZ_CP045972.1_500604_500769_+,NA|79aa|down_5|NZ_CP045972.1_500830_501067_-,NA|108aa|down_7|NZ_CP045972.1_503080_503404_+,NA|102aa|down_8|NZ_CP045972.1_503378_503684_+	NA|222aa|up_9|NZ_CP045972.1_482340_483006_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NZ_CP045972.1_483026_483782_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NZ_CP045972.1_483899_486059_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NZ_CP045972.1_486055_487204_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NZ_CP045972.1_487208_488156_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NZ_CP045972.1_488311_489907_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NZ_CP045972.1_490040_491324_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NZ_CP045972.1_491324_492425_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NZ_CP045972.1_492417_493968_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_0|NZ_CP045972.1_494787_496326_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NZ_CP045972.1_498712_499186_+	NA	NA|162aa|down_1|NZ_CP045972.1_499205_499691_+	NA	NA|102aa|down_2|NZ_CP045972.1_499718_500024_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP045972.1_500099_500366_+	NA	NA|55aa|down_4|NZ_CP045972.1_500604_500769_+	NA	NA|79aa|down_5|NZ_CP045972.1_500830_501067_-	NA	NA|577aa|down_6|NZ_CP045972.1_501305_503036_+	pfam14280, DUF4365, Domain of unknown function (DUF4365)	NA|108aa|down_7|NZ_CP045972.1_503080_503404_+	NA	NA|102aa|down_8|NZ_CP045972.1_503378_503684_+	NA	NA|306aa|down_9|NZ_CP045972.1_503712_504630_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH
GCF_009664775.1_ASM966477v1	NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	3	542783-543071	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,cas5	NA|133aa|up_5|NZ_CP045972.1_537772_538171_+,NA|193aa|down_0|NZ_CP045972.1_543330_543909_+	NA|217aa|up_9|NZ_CP045972.1_533835_534486_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP045972.1_534594_536655_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP045972.1_536658_537261_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP045972.1_537288_537756_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP045972.1_537772_538171_+	NA	NA|217aa|up_4|NZ_CP045972.1_538181_538832_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP045972.1_538828_539875_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP045972.1_539890_540184_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP045972.1_540198_541470_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP045972.1_541609_542545_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP045972.1_543330_543909_+	NA	NA|227aa|down_1|NZ_CP045972.1_544016_544697_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP045972.1_544721_545081_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP045972.1_545087_545546_-	pfam12802, MarR_2, MarR family	NA|144aa|down_4|NZ_CP045972.1_547845_548277_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_5|NZ_CP045972.1_548323_549754_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_6|NZ_CP045972.1_549874_550690_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_7|NZ_CP045972.1_550970_551339_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_8|NZ_CP045972.1_551485_552901_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_9|NZ_CP045972.1_553031_554036_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_009664775.1_ASM966477v1	NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	4	2766665-2766775	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,cas5	NA,NA|74aa|down_2|NZ_CP045972.1_2767544_2767766_-,NA|52aa|down_4|NZ_CP045972.1_2769706_2769862_+,NA|214aa|down_5|NZ_CP045972.1_2770433_2771075_-	NA|330aa|up_9|NZ_CP045972.1_2758590_2759580_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP045972.1_2759601_2760198_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP045972.1_2760201_2760576_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP045972.1_2760681_2761533_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP045972.1_2761651_2762491_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP045972.1_2762611_2763454_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP045972.1_2763499_2763745_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP045972.1_2763759_2764356_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP045972.1_2764464_2764782_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP045972.1_2764811_2766551_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP045972.1_2766877_2767342_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP045972.1_2767359_2767542_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP045972.1_2767544_2767766_-	NA	NA|455aa|down_3|NZ_CP045972.1_2767900_2769265_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP045972.1_2769706_2769862_+	NA	NA|214aa|down_5|NZ_CP045972.1_2770433_2771075_-	NA	NA|505aa|down_6|NZ_CP045972.1_2771772_2773287_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP045972.1_2773402_2774341_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP045972.1_2774383_2775331_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP045972.1_2775471_2777211_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
