The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	2931813	120336	126861	2931813	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|120336_120789_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|120794_121130_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|121346_121775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003721742.1|121786_122203_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_009930418.1|122480_122870_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|122882_123395_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|123442_123745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009930419.1|123786_124191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989347.1|124177_126046_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_009911828.1|126042_126861_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	2931813	1122513	1129936	2931813		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|1122513_1122897_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_010989659.1|1122918_1123902_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_010989660.1|1123916_1124930_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1125138_1126629_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_009931487.1|1126640_1127465_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	7.4e-68
WP_009931485.1|1127477_1127786_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_009931483.1|1127846_1128251_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_010989661.1|1128379_1129936_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 3
NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	2931813	1243986	1324532	2931813	holin,integrase,protease,capsid,tRNA,terminase,portal,tail	Listeria_phage(75.44%)	96	1243870:1243886	1286829:1286845
1243870:1243886	attL	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_014930113.1|1243986_1245141_-|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	94.8	2.0e-207
WP_025283118.1|1246347_1246800_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	89.3	9.7e-78
WP_014930118.1|1246820_1247144_-	helix-turn-helix transcriptional regulator	NA	Q8W5Y0	Listeria_phage	66.4	8.8e-33
WP_009931099.1|1247947_1248271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009929536.1|1248285_1248489_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	100.0	3.1e-28
WP_009931097.1|1248490_1248733_+	hypothetical protein	NA	A8ATD2	Listeria_phage	98.8	5.4e-43
WP_009931094.1|1249444_1249735_+	hypothetical protein	NA	A0A059T7V3	Listeria_phage	89.4	1.8e-40
WP_031659545.1|1249752_1249935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930119.1|1250128_1250404_+	hypothetical protein	NA	R4ICD2	Listeria_phage	94.3	3.4e-41
WP_009931089.1|1250400_1250844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930120.1|1250860_1251169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930121.1|1251165_1251729_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	61.5	1.6e-58
WP_014930122.1|1251787_1252300_+	pentapeptide repeat-containing protein	NA	M4H0V1	Listeria_phage	86.9	1.0e-30
WP_009932944.1|1252300_1252930_+	hypothetical protein	NA	A0A191KBJ8	Streptococcus_virus	57.9	2.4e-66
WP_003722554.1|1252948_1253116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045131531.1|1253219_1253396_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	86.2	5.5e-21
WP_076994950.1|1253392_1253794_+	hypothetical protein	NA	A8ATD9	Listeria_phage	94.7	3.0e-70
WP_025283119.1|1253790_1253997_+	hypothetical protein	NA	A0A059T6C7	Listeria_phage	92.6	1.7e-29
WP_154079741.1|1254023_1254194_+	hypothetical protein	NA	A0A059T654	Listeria_phage	92.3	2.4e-21
WP_023548953.1|1254190_1254625_+	hypothetical protein	NA	A8ATS7	Listeria_phage	52.8	2.5e-38
WP_009933640.1|1254827_1255028_+	hypothetical protein	NA	A0A059T6A2	Listeria_phage	58.1	2.6e-11
WP_014930125.1|1255024_1255636_+	hypothetical protein	NA	B6D7K1	Listeria_phage	49.5	6.8e-50
WP_009933853.1|1255650_1255884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930126.1|1255880_1256651_+	DUF1351 domain-containing protein	NA	B6D7K2	Listeria_phage	27.4	3.3e-17
WP_014930127.1|1256653_1257289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930128.1|1257361_1259050_+	hypothetical protein	NA	A8ATS1	Listeria_phage	43.6	1.6e-125
WP_014930129.1|1259052_1260858_+	primase	NA	A8ATS2	Listeria_phage	40.2	3.5e-126
WP_025283122.1|1261273_1261807_+	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	79.4	1.3e-76
WP_003731655.1|1262024_1262252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009917712.1|1262264_1262690_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	100.0	8.0e-74
WP_010991275.1|1262787_1263531_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_014930130.1|1263777_1264104_+	hypothetical protein	NA	A0A059T5G5	Listeria_phage	100.0	2.2e-55
WP_009931610.1|1264103_1264418_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	98.1	5.0e-57
WP_012951543.1|1264467_1264824_+	hypothetical protein	NA	A0A059T7Y1	Listeria_phage	98.0	2.0e-46
WP_012951544.1|1264820_1266464_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	99.3	0.0e+00
WP_009917707.1|1266473_1266863_-	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	39.8	3.7e-17
WP_012951545.1|1266913_1268044_+|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	99.5	2.8e-214
WP_012951546.1|1268040_1268757_+|protease	Clp protease ClpP	protease	A0A1S5SFF8	Streptococcus_phage	59.0	9.3e-67
WP_012951547.1|1268783_1269935_+|capsid	phage major capsid protein	capsid	A0A059T678	Listeria_phage	99.5	3.1e-213
WP_009934007.1|1270121_1270421_+	hypothetical protein	NA	A8ATA0	Listeria_phage	98.0	9.9e-47
WP_009934006.1|1270404_1270770_+	hypothetical protein	NA	A0A059T6F2	Listeria_phage	96.7	1.6e-62
WP_012951550.1|1270766_1271168_+	hypothetical protein	NA	A0A059T5F3	Listeria_phage	100.0	2.1e-68
WP_009931623.1|1271164_1271548_+	hypothetical protein	NA	A0A059T681	Listeria_phage	96.1	6.1e-65
WP_009931624.1|1271568_1272156_+|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	100.0	4.0e-108
WP_014930131.1|1272226_1272559_+	hypothetical protein	NA	A0A059T7R2	Listeria_phage	97.3	1.1e-51
WP_014930132.1|1272774_1277706_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	96.5	0.0e+00
WP_014930133.1|1277693_1279343_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	99.3	0.0e+00
WP_012951555.1|1279355_1281650_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	94.0	0.0e+00
WP_031644619.1|1281639_1282734_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	87.9	2.2e-184
WP_012951557.1|1282781_1283084_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	93.0	1.7e-38
WP_012951558.1|1283083_1283341_+|holin	phage holin	holin	A8ATB7	Listeria_phage	69.0	3.2e-25
WP_014930134.1|1283340_1284183_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	81.6	9.5e-127
WP_012951560.1|1284286_1285285_+	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	44.8	3.9e-71
WP_003769913.1|1285499_1285706_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	82.8	1.3e-16
WP_009933529.1|1286295_1286529_+	hypothetical protein	NA	R4IDW6	Listeria_phage	78.9	2.8e-28
WP_009933528.1|1286525_1286717_+	hypothetical protein	NA	R4IBI5	Listeria_phage	88.9	8.9e-25
WP_010989715.1|1287210_1288569_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1286829:1286845	attR	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_010989716.1|1288610_1289204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009914084.1|1289357_1289765_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_009924169.1|1289929_1290529_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
WP_003723543.1|1290560_1290821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989717.1|1290944_1292357_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
WP_003723545.1|1292381_1292645_+	DUF3116 domain-containing protein	NA	NA	NA	NA	NA
WP_003723546.1|1292812_1293289_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003723547.1|1293326_1293572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723548.1|1293568_1294774_-	MFS transporter	NA	NA	NA	NA	NA
WP_076994951.1|1294978_1295602_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1295679_1295874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1295940_1296789_-	YitT family protein	NA	NA	NA	NA	NA
WP_009931701.1|1297407_1298121_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_010989718.1|1298151_1299798_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003723556.1|1299816_1301301_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_003723557.1|1301416_1301869_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_003723558.1|1301915_1302380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723559.1|1302568_1303489_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009932313.1|1303508_1304756_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
WP_003723561.1|1304739_1305570_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_003723562.1|1305705_1306845_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1306925_1307321_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1307471_1307687_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1307805_1308339_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1308356_1309022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1309283_1310222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1310336_1311620_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1311805_1313065_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1313183_1313750_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723888.1|1313784_1314354_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1314455_1314998_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1315007_1315871_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1315867_1316653_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_010989720.1|1316786_1317647_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_009924617.1|1317918_1319997_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_010989721.1|1320059_1321364_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1321646_1322549_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_014601431.1|1322569_1323109_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_010989722.1|1323122_1324532_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.7	4.9e-43
>prophage 4
NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	2931813	1858146	1866432	2931813		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1858146_1858713_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_009933235.1|1858709_1859759_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.0e-61
WP_010989807.1|1859777_1861205_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.9	8.1e-54
WP_010989808.1|1861189_1863409_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	2.0e-160
WP_003733240.1|1863401_1864085_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1864088_1864334_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_010989809.1|1864345_1865059_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
WP_003733238.1|1865139_1866432_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 5
NZ_CP045972	Listeria monocytogenes strain AUSMDU00000224 chromosome, complete genome	2931813	2522741	2530585	2931813		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2522741_2523713_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2523720_2524689_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_010990001.1|2524690_2525566_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
WP_010990002.1|2525673_2527404_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	1.3e-175
WP_009930954.1|2527445_2528507_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_009924988.1|2528523_2529507_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
WP_003722610.1|2529625_2530585_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 1
NZ_CP045973	Listeria monocytogenes strain AUSMDU00000224 plasmid pAUSMDU00000224_01, complete sequence	57553	31037	39882	57553	transposase	Streptococcus_phage(33.33%)	10	NA	NA
WP_003728469.1|31037_33953_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	1.9e-174
WP_003728468.1|33956_34511_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	53.4	7.0e-38
WP_003728467.1|34790_35150_+	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
WP_003728466.1|35149_37285_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	1.6e-247
WP_003728465.1|37477_37819_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_003728464.1|37812_38055_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003728463.1|38115_38367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728462.1|38497_38824_+	hypothetical protein	NA	A0A2K9V3N4	Faecalibacterium_phage	40.8	3.2e-06
WP_003731676.1|38823_39486_+	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
WP_003728521.1|39498_39882_+	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	53.4	2.2e-14
