assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009664735.1_ASM966473v1	NZ_CP045969	Listeria monocytogenes strain AUSMDU00007774 chromosome, complete genome	1	526530-527078	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	1	1	526950-526985	NZ_CP045969.1_1269674-1269709	I-A:I-A:I-A	8,8,8	8	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|133aa|up_5|NZ_CP045969.1_521519_521918_+,NA|193aa|down_0|NZ_CP045969.1_527469_528048_+	NA|217aa|up_9|NZ_CP045969.1_517582_518233_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP045969.1_518341_520402_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP045969.1_520405_521008_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP045969.1_521035_521503_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP045969.1_521519_521918_+	NA	NA|217aa|up_4|NZ_CP045969.1_521928_522579_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP045969.1_522575_523622_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP045969.1_523637_523931_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP045969.1_523945_525217_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP045969.1_525356_526292_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP045969.1_527469_528048_+	NA	NA|227aa|down_1|NZ_CP045969.1_528154_528835_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP045969.1_528859_529219_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP045969.1_529225_529684_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP045969.1_530065_531901_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP045969.1_532001_532433_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP045969.1_532479_533910_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP045969.1_534030_534846_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP045969.1_535198_535921_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NZ_CP045969.1_535936_537625_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_009664735.1_ASM966473v1	NZ_CP045969	Listeria monocytogenes strain AUSMDU00007774 chromosome, complete genome	2	543504-547307	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	2	2	544511-544548|546336-546371	NZ_CP045969.1_2382018-2381981|NZ_CP045969.1_1259547-1259512	I-A:I-A:I-A	57,58,58	58	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|148aa|down_5|NZ_CP045969.1_552854_553298_+,NA|492aa|down_9|NZ_CP045969.1_557607_559083_+	NA|477aa|up_9|NZ_CP045969.1_532479_533910_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_8|NZ_CP045969.1_534030_534846_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_7|NZ_CP045969.1_535198_535921_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_6|NZ_CP045969.1_535936_537625_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_5|NZ_CP045969.1_537614_538484_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_4|NZ_CP045969.1_538461_539244_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|736aa|up_3|NZ_CP045969.1_539311_541519_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|163aa|up_2|NZ_CP045969.1_541532_542021_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|330aa|up_1|NZ_CP045969.1_542033_543023_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|93aa|up_0|NZ_CP045969.1_543027_543306_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP045969.1_547379_547748_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP045969.1_547894_549310_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP045969.1_549441_550446_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP045969.1_550477_551794_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP045969.1_551995_552748_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP045969.1_552854_553298_+	NA	NA|554aa|down_6|NZ_CP045969.1_553343_555005_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP045969.1_555261_556593_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP045969.1_556637_557378_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP045969.1_557607_559083_+	NA
GCF_009664735.1_ASM966473v1	NZ_CP045969	Listeria monocytogenes strain AUSMDU00007774 chromosome, complete genome	3	2542654-2542815	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA|140aa|up_7|NZ_CP045969.1_2527941_2528361_-,NA|58aa|down_3|NZ_CP045969.1_2545000_2545174_-	WYL|299aa|up_9|NZ_CP045969.1_2526255_2527152_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NZ_CP045969.1_2527196_2527766_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|NZ_CP045969.1_2527941_2528361_-	NA	NA|1311aa|up_6|NZ_CP045969.1_2529310_2533243_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NZ_CP045969.1_2533257_2534202_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NZ_CP045969.1_2534261_2537537_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NZ_CP045969.1_2537920_2538829_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP045969.1_2538884_2539349_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP045969.1_2539364_2541746_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP045969.1_2541779_2542526_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NZ_CP045969.1_2542889_2543123_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP045969.1_2543222_2543966_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NZ_CP045969.1_2544148_2544868_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NZ_CP045969.1_2545000_2545174_-	NA	NA|431aa|down_4|NZ_CP045969.1_2545276_2546569_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NZ_CP045969.1_2546704_2548237_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|NZ_CP045969.1_2548238_2548994_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|NZ_CP045969.1_2549039_2550230_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|NZ_CP045969.1_2550364_2551375_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|NZ_CP045969.1_2551406_2552453_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_009664735.1_ASM966473v1	NZ_CP045969	Listeria monocytogenes strain AUSMDU00007774 chromosome, complete genome	4	2807651-2807761	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,RT,DEDDh	NA,NA|74aa|down_2|NZ_CP045969.1_2808530_2808752_-,NA|52aa|down_4|NZ_CP045969.1_2810692_2810848_+,NA|214aa|down_5|NZ_CP045969.1_2811419_2812061_-	NA|330aa|up_9|NZ_CP045969.1_2799576_2800566_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP045969.1_2800587_2801184_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP045969.1_2801187_2801562_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP045969.1_2801667_2802519_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP045969.1_2802637_2803477_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP045969.1_2803597_2804440_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP045969.1_2804485_2804731_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP045969.1_2804745_2805342_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP045969.1_2805450_2805768_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP045969.1_2805797_2807537_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP045969.1_2807863_2808328_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP045969.1_2808345_2808528_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP045969.1_2808530_2808752_-	NA	NA|455aa|down_3|NZ_CP045969.1_2808886_2810251_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP045969.1_2810692_2810848_+	NA	NA|214aa|down_5|NZ_CP045969.1_2811419_2812061_-	NA	NA|505aa|down_6|NZ_CP045969.1_2812758_2814273_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP045969.1_2814388_2815327_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP045969.1_2815369_2816317_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP045969.1_2816458_2818198_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
