assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009664635.1_ASM966463v1	NZ_CP045952	Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00008979 chromosome, complete genome	1	600560-600660	1	CRISPRCasFinder	no		cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	NA,NA|177aa|down_1|NZ_CP045952.1_602178_602709_-	NA|448aa|up_9|NZ_CP045952.1_586638_587982_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP045952.1_588609_589062_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP045952.1_589089_590592_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP045952.1_590616_593295_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP045952.1_593515_593917_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP045952.1_593916_594861_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP045952.1_595011_595281_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP045952.1_595522_597658_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP045952.1_597767_598652_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP045952.1_598757_598838_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP045952.1_600873_602118_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP045952.1_602178_602709_-	NA	NA|240aa|down_2|NZ_CP045952.1_602867_603587_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP045952.1_603564_604572_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP045952.1_604749_605646_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP045952.1_605636_606632_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP045952.1_606848_607373_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP045952.1_607366_607870_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP045952.1_607856_608174_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP045952.1_608211_608655_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_009664635.1_ASM966463v1	NZ_CP045952	Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00008979 chromosome, complete genome	2	1120888-1122851	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	2	2	1122806-1122837|1122791-1122822	NZ_CP045952.1_1836214-1836245|NZ_CP045952.1_1836214-1836245	I-E:I-E:I-E:I-E:I-E	30,31,31,31,30	31	TypeI-E	cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	NA,NA	NA|254aa|up_9|NZ_CP045952.1_1112754_1113516_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP045952.1_1113496_1114546_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP045952.1_1114542_1115022_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP045952.1_1115021_1115732_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP045952.1_1115750_1116062_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP045952.1_1116252_1116609_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP045952.1_1116626_1117232_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP045952.1_1117218_1118658_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP045952.1_1118667_1119576_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP045952.1_1119826_1120873_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP045952.1_1122947_1123241_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP045952.1_1123240_1124161_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP045952.1_1124157_1124808_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP045952.1_1124789_1125536_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP045952.1_1125546_1126605_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP045952.1_1126618_1127179_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|down_6|NZ_CP045952.1_1131850_1132804_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_7|NZ_CP045952.1_1132891_1133626_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_8|NZ_CP045952.1_1133701_1135414_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_9|NZ_CP045952.1_1135413_1137213_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_009664635.1_ASM966463v1	NZ_CP045952	Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00008979 chromosome, complete genome	3	1138982-1140475	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,24,23	24	TypeI-E	cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	NA,NA	cas6e|217aa|up_9|NZ_CP045952.1_1124157_1124808_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|up_8|NZ_CP045952.1_1124789_1125536_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|up_7|NZ_CP045952.1_1125546_1126605_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_6|NZ_CP045952.1_1126618_1127179_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|up_5|NZ_CP045952.1_1131850_1132804_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP045952.1_1132891_1133626_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP045952.1_1133701_1135414_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP045952.1_1135413_1137213_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP045952.1_1137636_1137999_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP045952.1_1138086_1138884_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP045952.1_1140771_1141443_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP045952.1_1141578_1142877_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP045952.1_1142959_1144597_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP045952.1_1144824_1145625_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP045952.1_1146392_1146689_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP045952.1_1146654_1147011_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP045952.1_1147094_1149329_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP045952.1_1149380_1150676_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP045952.1_1150733_1153490_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP045952.1_1153533_1154676_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
GCF_009664635.1_ASM966463v1	NZ_CP045952	Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00008979 chromosome, complete genome	4	1485409-1485493	5	CRISPRCasFinder	no		cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	Orphan	AAGGCTCGGGTGGGGATATTCTGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,RT,WYL,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas14j,DEDDh,DinG	NA|77aa|up_3|NZ_CP045952.1_1479517_1479748_+,NA	NA|1038aa|up_9|NZ_CP045952.1_1468550_1471664_-	PRK10555, PRK10555, multidrug efflux RND transporter permease AcrD	NA|567aa|up_8|NZ_CP045952.1_1471848_1473549_-	PRK10935, PRK10935, nitrate/nitrite two-component system sensor histidine kinase NarQ	NA|654aa|up_7|NZ_CP045952.1_1473734_1475696_+	PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed	NA|433aa|up_6|NZ_CP045952.1_1476144_1477443_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|192aa|up_5|NZ_CP045952.1_1477646_1478222_+	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional	NA|348aa|up_4|NZ_CP045952.1_1478346_1479390_+	pfam06674, DUF1176, Protein of unknown function (DUF1176)	NA|77aa|up_3|NZ_CP045952.1_1479517_1479748_+	NA	NA|667aa|up_2|NZ_CP045952.1_1479810_1481811_-	PRK12753, PRK12753, transketolase; Reviewed	NA|317aa|up_1|NZ_CP045952.1_1481830_1482781_-	PRK12346, PRK12346, transaldolase A; Provisional	NA|760aa|up_0|NZ_CP045952.1_1483052_1485332_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|112aa|down_0|NZ_CP045952.1_1485810_1486146_+	PRK15468, PRK15468, ethanolamine utilization microcompartment protein EutS	NA|160aa|down_1|NZ_CP045952.1_1486158_1486638_+	PRK15467, PRK15467, ethanolamine utilization acetate kinase EutP	NA|230aa|down_2|NZ_CP045952.1_1486615_1487305_+	PRK15457, PRK15457, ethanolamine utilization acetate kinase EutQ	NA|268aa|down_3|NZ_CP045952.1_1487301_1488105_+	PRK15020, PRK15020, ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT	NA|339aa|down_4|NZ_CP045952.1_1488101_1489118_+	PRK09653, eutD, phosphotransacetylase	NA|97aa|down_5|NZ_CP045952.1_1489158_1489449_+	PRK15474, PRK15474, ethanolamine utilization microcompartment protein EutM	NA|100aa|down_6|NZ_CP045952.1_1489549_1489849_+	PRK15448, PRK15448, ethanolamine utilization microcompartment protein EutN	NA|468aa|down_7|NZ_CP045952.1_1489860_1491264_+	PRK15398, PRK15398, aldehyde dehydrogenase	NA|280aa|down_8|NZ_CP045952.1_1491274_1492114_+	COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]	NA|396aa|down_9|NZ_CP045952.1_1492103_1493291_+	PRK15454, PRK15454, ethanolamine utilization ethanol dehydrogenase EutG
