The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	865514	908149	4723195	transposase,protease	Stx2-converting_phage(36.36%)	31	NA	NA
WP_094081514.1|865514_866677_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	6.8e-51
WP_000875412.1|867079_867325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001290187.1|868101_868944_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_000772029.1|869028_869226_-	DUF957 domain-containing protein	NA	NA	NA	NA	NA
WP_000761715.1|869245_869734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001094430.1|869730_870108_-	toxin	NA	NA	NA	NA	NA
WP_001285620.1|870154_870532_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA	NA
WP_000692350.1|870611_870833_-	DUF987 domain-containing protein	NA	A0A142F0X9	Klebsiella_phage	45.8	1.9e-10
WP_128570583.1|870919_871396_-	RadC family protein	NA	NA	NA	NA	NA
WP_000855059.1|871411_871885_-	antirestriction protein	NA	A9J566	Pseudomonas_phage	30.3	1.5e-12
WP_001177758.1|872226_873045_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	38.6	8.8e-45
WP_005051844.1|873455_873911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005093816.1|873986_876503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000820367.1|876623_879746_-	autotransporter adhesin Ag43	NA	NA	NA	NA	NA
WP_001069724.1|880079_880952_-	GTPase family protein	NA	NA	NA	NA	NA
WP_005051842.1|881061_882081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000261147.1|883364_883649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005093820.1|883650_884223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001095918.1|884308_884515_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_011069510.1|884900_885692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001195464.1|888319_888919_+	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_000271035.1|889291_889675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013320.1|889671_890097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001189111.1|891787_893296_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_001045650.1|894023_898142_+|protease	serine protease autotransporter toxin Pic	protease	Q9LA54	Enterobacteria_phage	45.8	0.0e+00
WP_050583179.1|898573_898954_-|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	84.9	9.3e-58
WP_000381321.1|899031_900603_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_000624622.1|900622_900970_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_001340280.1|900969_901647_-|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_000291751.1|903663_904245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001034110.1|904291_908149_-|protease	serine protease autotransporter toxin SigA	protease	Q9LA58	Enterobacterial_phage	38.3	2.4e-225
>prophage 2
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	1010096	1017765	4723195	transposase,integrase	Stx2-converting_phage(42.86%)	7	1010988:1011004	1023570:1023586
WP_005051685.1|1010096_1010852_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I2E8W3	Clostridium_phage	36.8	1.1e-12
1010988:1011004	attL	TCCCTTCGCCCGCTCCA	NA	NA	NA	NA
WP_112324888.1|1011138_1012755_+|integrase	site-specific integrase	integrase	A0A059XK29	uncultured_phage	27.9	3.7e-10
WP_112324889.1|1012738_1013395_+	DUF4145 domain-containing protein	NA	M1PSB6	Streptococcus_phage	34.4	1.2e-31
WP_001340280.1|1013963_1014641_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_000624622.1|1014640_1014988_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_000381321.1|1015007_1016579_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_112324900.1|1017051_1017765_+	hypothetical protein	NA	A0A1P8DUU9	Escherichia_phage	40.2	6.5e-12
1023570:1023586	attR	TCCCTTCGCCCGCTCCA	NA	NA	NA	NA
>prophage 3
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	1137274	1145068	4723195	transposase	Pseudomonas_phage(50.0%)	6	NA	NA
WP_001224024.1|1137274_1137838_-	hypothetical protein	NA	A0A2D1GNR8	Pseudomonas_phage	55.8	1.1e-35
WP_001249841.1|1138002_1138254_+	helix-turn-helix domain-containing protein	NA	A0A2D1GNH1	Pseudomonas_phage	53.0	1.1e-17
WP_001192434.1|1138255_1140352_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2D1GNK9	Pseudomonas_phage	48.7	1.2e-173
WP_134797793.1|1140585_1141742_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	2.3e-67
WP_167389528.1|1141803_1142915_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.9	1.2e-65
WP_005051483.1|1144300_1145068_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	4.8e-69
>prophage 4
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	1216547	1287978	4723195	transposase,tail,tRNA,integrase	Enterobacteria_phage(15.79%)	63	1203659:1203718	1285019:1286350
1203659:1203718	attL	ATAGACTGGCCCCCTGAATCTCCAGACAACCAGTATCACTTATTTAAGTGATAGTCTTAA	NA	NA	NA	NA
WP_094081520.1|1216547_1217710_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	1.2e-50
WP_112324857.1|1218725_1219967_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	46.3	1.2e-98
WP_000162574.1|1220748_1221231_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
WP_000600189.1|1221362_1221839_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA	NA
WP_000900741.1|1221828_1222119_+	RnfH family protein	NA	NA	NA	NA	NA
WP_001203437.1|1222180_1222522_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_000880917.1|1222670_1224332_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001059169.1|1224417_1225296_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_001296310.1|1225418_1226012_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_077696344.1|1226066_1227353_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_005051300.1|1227373_1228165_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_000460045.1|1228331_1229693_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000256450.1|1229829_1230078_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000043335.1|1230096_1230645_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000264777.1|1230675_1231443_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000065253.1|1231484_1231832_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000589824.1|1231908_1232391_-	OmpA family protein	NA	NA	NA	NA	NA
WP_001212392.1|1233621_1234140_-	YfiR family protein	NA	NA	NA	NA	NA
WP_005051282.1|1234289_1234655_-	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_000548559.1|1234864_1235935_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	50.9	2.6e-89
WP_000225239.1|1235945_1237067_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_000200120.1|1237109_1238270_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_010723158.1|1238368_1238416_-	phe operon leader peptide	NA	NA	NA	NA	NA
WP_000178456.1|1238519_1238861_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000483773.1|1239174_1240521_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_005051270.1|1240557_1243131_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.3	2.0e-127
WP_000040142.1|1243260_1243992_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079112.1|1243988_1244969_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_073828238.1|1245103_1245841_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000483773.1|1245891_1247238_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000841103.1|1253071_1254370_+	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	32.2	1.3e-45
WP_005085125.1|1254366_1254690_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_005051257.1|1254735_1256091_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_000082966.1|1256204_1258865_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_001343689.1|1258896_1259595_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_001098726.1|1259663_1260083_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
WP_112324873.1|1260289_1261327_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001262715.1|1261374_1262064_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	48.8	5.5e-56
WP_000627802.1|1262368_1262752_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
WP_000187873.1|1262807_1263395_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_005051239.1|1263497_1264379_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_112324874.1|1264413_1265748_-	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
WP_001298974.1|1265879_1266617_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_001303621.1|1268479_1268635_+	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_001295364.1|1268631_1269207_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_001168466.1|1269239_1269890_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000812053.1|1269889_1270846_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_000589070.1|1270842_1271322_+	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000790168.1|1271519_1273319_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	41.9	4.2e-23
WP_000002542.1|1273334_1274309_+	signal peptidase I	NA	NA	NA	NA	NA
WP_001068343.1|1274580_1275261_+	ribonuclease III	NA	A0A2P0VNZ5	Tetraselmis_virus	39.6	5.6e-21
WP_000020747.1|1275257_1276163_+	GTPase Era	NA	NA	NA	NA	NA
WP_000399400.1|1276174_1276903_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_004969731.1|1276914_1277646_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000986029.1|1277645_1278026_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_000128776.1|1278445_1278526_+	type I toxin-antitoxin system toxin ShoB	NA	NA	NA	NA	NA
WP_000054752.1|1278719_1278980_-	4Fe-4S dicluster ferredoxin YfhL	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
WP_094092399.1|1280334_1281491_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	5.2e-67
WP_001181756.1|1282254_1282860_+	DUF2612 domain-containing protein	NA	H9C0Y0	Aeromonas_phage	43.8	1.2e-30
WP_094081542.1|1283757_1284986_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_011069472.1|1285049_1285568_+	hypothetical protein	NA	Q7Y4D4	Escherichia_virus	53.0	3.5e-39
WP_000902877.1|1285570_1286116_+|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	73.1	2.5e-72
WP_000551130.1|1287354_1287978_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	77.0	1.1e-79
1285019:1286350	attR	TTAAGACTATCACTTAAATAAGTGATACTGGTTGTCTGGAGATTCAGGGGGCCAGTCTATCCGCTTTCAGAATGGAGTGGCTATTGCTTTTAAGAATATTCAGGCCGGAACTGCCAGAAAATTCACGTTATCCAGCGCCAACAACTCCACGAAAAATGCAGCGTTTTATTTGTGGGGTAATCCATCCAGGCCTGTTGTTGCAGAGCTTGGTGATGATTCAGGCTGGCATTTTTTCAGCCAGAGAAACCCGGATAACAGCATAGTGTTCACTGTTAACGGACAGGTAATTCCGTTAAATTACGGAAACTTCGATGCCCGCTATAAATATCGAACAGAGGGGGTACAGGATGTACGGTATGGCCATGAAATGTATTACAGCCCCGGCAGTAACACCGTTTCGTGGAGATTTTGCGCACCTTCGGGACACGGGCTGTCAGGGATGGCGATATCGGATACCGGCCGTAACTCAGCGGATAACGTTGACGGTGTGTATTACCGACCACTGCAAAAACTGATTAATGGCACCTGGTATAACGTAGCGAGTATTTAACAATGTTGCATTTAAAAAATATTACTGCGGGTAATCCGAAAACAGCAGAACAATATCAGATGACAAAACGATATTCGGTCACCTGGCTTTTTTCAGAAGACGGAAAAAACTGGTATGAAGAGCTGAAGAATTTCGCCAGCGACACAATAAAAATAGCTTACACCGGAGATGGTCGCGTGGTGTGGGTCGGTAAGGATGTGACAGGCATCGAGCCACGCAATGCCAGCGTTATCGAAGTTCCGGATATTACCGCTAACCGACGGATTACCGCGCCGGGTTACTGGTTTTACCGCAATGATGAATTTGTCTTTGACTACAGACTCAAAGCGGAAGATGAGCGTGATGCCCTTCTGGCTCAGGTCAGTGCCCGGACAGGGGAATGGGAAGAAGACCTGCTGCTGGGGTTAATCAGCGACGAAGATAAAGAAAAGCTGAAAGCCTGTCGTATTTACGCGAAATCGCTGCAGGCGATGGATTTCAGCACCATCACTGATAAATCCTCATACAACGCCATTGAATGGCCCGCCTCTCCGGAAGGTTCTTCCTGATTTAATTTATCGCGAGAAAAACAATGTCTGTAGTGATATCAGGTGCGCTGACTGATGGCGCAGGTATCCCCATGTCCGGATACCATATTATTCTGAAATCCCGGGTAAACACCCCGGAAGTGGTGATGAACACTGTTGCTGATGTGATGACAGGAAACGATGGTGAATACTGTTTCCATGCGCGGACTGGAAAATATGGTGTGTATCTGAAACAGGACTGGCGCAACGAGTACA	NA	NA	NA	NA
>prophage 5
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	1841277	1847584	4723195		Enterobacteria_phage(50.0%)	6	NA	NA
WP_001116126.1|1841277_1842672_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	30.9	1.8e-18
WP_000183041.1|1842846_1843740_+	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.3e-46
WP_000699404.1|1844112_1845198_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	5.7e-100
WP_001023623.1|1845197_1846097_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.6	4.4e-29
WP_154074678.1|1846155_1847034_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	7.3e-106
WP_001100804.1|1847038_1847584_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.3	3.5e-50
>prophage 6
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	1874607	1964922	4723195	transposase,tail,holin,integrase	Stx2-converting_phage(20.0%)	77	1870334:1870346	1915711:1915743
1870334:1870346	attL	AGCTGGTTCGCCG	NA	NA	NA	NA
WP_001007949.1|1874607_1875447_+|integrase	integrase family protein	integrase	A0A0P0ZDN8	Stx2-converting_phage	99.6	1.3e-160
1870334:1870346	attL	AGCTGGTTCGCCG	NA	NA	NA	NA
WP_001088287.1|1875525_1876200_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
WP_001088287.1|1875525_1876200_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
1875808:1875820	attR	CGGCGAACCAGCT	NA	NA	NA	NA
WP_005048975.1|1876196_1876547_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	68.7	3.5e-27
1875808:1875820	attR	CGGCGAACCAGCT	NA	NA	NA	NA
WP_094081542.1|1877538_1878766_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_149617751.1|1879131_1880287_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.5e-66
WP_154074679.1|1881602_1883204_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.3	3.5e-146
WP_004967157.1|1884856_1885531_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.8	2.0e-10
WP_005088730.1|1885600_1885900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000450409.1|1886071_1886401_+	DUF496 family protein	NA	NA	NA	NA	NA
WP_001016348.1|1886501_1886684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094081493.1|1888699_1889855_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_000261572.1|1889867_1890377_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
WP_005049317.1|1890373_1891117_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA	NA
WP_001165576.1|1891128_1892208_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000986341.1|1892269_1893205_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_001011445.1|1893663_1894581_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA	NA
WP_001010988.1|1894682_1895633_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA	NA
WP_000532920.1|1898009_1898726_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001060217.1|1899068_1900523_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_094112704.1|1900874_1902031_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_005063096.1|1902092_1902596_-	MFS transporter	NA	NA	NA	NA	NA
WP_000747032.1|1902657_1903825_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_001325918.1|1905532_1906330_-	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_000533619.1|1906565_1907591_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	57.9	2.0e-102
WP_005069274.1|1907757_1908174_+	hypothetical protein	NA	A0A076GCN9	Escherichia_phage	72.0	1.5e-24
WP_000935258.1|1908768_1908981_+	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	95.7	6.6e-29
WP_011069426.1|1909148_1909427_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	45.0	4.5e-09
WP_001265248.1|1909428_1910487_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	48.0	2.6e-89
WP_000140020.1|1910487_1910853_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	68.1	7.1e-39
WP_005049343.1|1910849_1911533_+	antiterminator	NA	I6PDF8	Cronobacter_phage	49.8	2.0e-58
WP_000839572.1|1912333_1912549_+|holin	class II holin family protein	holin	M1FN85	Enterobacteria_phage	98.6	5.3e-34
WP_004967157.1|1912647_1913322_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.8	2.0e-10
WP_005049241.1|1913318_1913669_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	67.5	1.8e-26
WP_094105050.1|1914543_1915699_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	3.4e-66
WP_000497744.1|1916093_1916255_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	76.6	9.2e-15
WP_000155744.1|1916251_1917748_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	Q8W623	Enterobacteria_phage	97.4	5.9e-273
WP_001062338.1|1917747_1918104_+|tail	phage tail tube protein	tail	Q8W622	Enterobacteria_phage	98.3	5.3e-63
WP_001251340.1|1918103_1918439_+|tail	phage tail assembly protein	tail	Q8W621	Enterobacteria_phage	97.2	9.8e-51
WP_000785377.1|1918523_1920473_+|tail	phage tail tape measure protein	tail	Q8W620	Enterobacteria_phage	98.2	0.0e+00
WP_000594909.1|1920540_1921023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014532281.1|1923427_1925071_-	T3SS effector E3 ubiquitin-protein ligase IpaH4/H7	NA	NA	NA	NA	NA
WP_000239881.1|1925386_1926055_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000937511.1|1926111_1926381_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	81.7	1.2e-19
WP_001007781.1|1927458_1928109_-	metal-binding protein ZinT	NA	NA	NA	NA	NA
WP_001240061.1|1928366_1929002_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_000920127.1|1930115_1930529_-	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
WP_001347103.1|1930661_1931333_+	response regulator transcription factor HprR	NA	W8CYM9	Bacillus_phage	35.2	5.4e-32
WP_000826714.1|1931332_1932691_+	two-component system sensor histidine kinase HprS	NA	NA	NA	NA	NA
WP_000218218.1|1932798_1933650_-	protein deglycase HchA	NA	NA	NA	NA	NA
WP_111778310.1|1935293_1936521_+|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.7	9.8e-173
WP_085949497.1|1937360_1938507_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.6	2.3e-147
WP_032155863.1|1938508_1938766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001157215.1|1939412_1940831_+	DNA-cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	55.1	1.0e-101
WP_000228688.1|1940811_1941282_+	VSPR family DNA mismatch endonuclease	NA	E5E3X5	Burkholderia_phage	47.6	7.6e-33
WP_001212270.1|1941270_1942191_-	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_000922688.1|1942363_1943281_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_000009302.1|1943359_1943542_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_005048789.1|1946516_1946744_-	peroxide/acid resistance protein YodD	NA	NA	NA	NA	NA
WP_000867216.1|1946906_1947095_+	protein DsrB	NA	NA	NA	NA	NA
WP_000103994.1|1947138_1947762_-	transcriptional regulator RcsA	NA	NA	NA	NA	NA
WP_000983188.1|1948046_1948832_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_000187358.1|1948840_1949110_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_001253318.1|1949119_1949857_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_001298519.1|1949856_1950222_-	flagellar type III secretion system protein FliO	NA	NA	NA	NA	NA
WP_001282086.1|1950224_1950638_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_005048779.1|1950634_1951639_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_000133106.1|1951643_1952108_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_000620124.1|1952212_1953340_-	flagellar hook length control protein FliK	NA	NA	NA	NA	NA
WP_000213277.1|1953699_1955073_-	flagellum-specific ATP synthase FliI	NA	NA	NA	NA	NA
WP_001282677.1|1955072_1955759_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_000067956.1|1955751_1956747_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_001274301.1|1958612_1958927_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_001070440.1|1959271_1959604_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA	NA
WP_001313946.1|1959772_1960324_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA	NA
WP_000737286.1|1961620_1962703_-	porin OmpD	NA	Q1MVN1	Enterobacteria_phage	79.8	7.8e-166
WP_005127797.1|1963713_1963887_+	helix-turn-helix domain-containing protein	NA	A0A1B0VCD8	Salmonella_phage	77.2	1.4e-16
WP_162855496.1|1964151_1964922_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1W6JP07	Morganella_phage	97.3	3.7e-130
>prophage 7
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2008822	2111727	4723195	transposase,tail,tRNA,integrase	Enterobacteria_phage(34.15%)	87	2007036:2007095	2087634:2088526
2007036:2007095	attL	TGAGGTGTACTGGCAATAGCGGACACTACCATTTGTTCTTTTTTTAAGCAGCCATCTGAT	NA	NA	NA	NA
WP_000747032.1|2008822_2009990_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_000455174.1|2009925_2010384_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_001259572.1|2013836_2014175_+	flagellar protein FlhE	NA	NA	NA	NA	NA
WP_001189111.1|2015634_2017143_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_005063152.1|2017925_2018414_-	lysozyme inhibitor LprI family protein	NA	NA	NA	NA	NA
WP_001025297.1|2018590_2020324_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.7	6.8e-87
WP_005048653.1|2020539_2021106_+	VOC family protein	NA	NA	NA	NA	NA
WP_001185741.1|2021119_2021866_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_001214308.1|2022253_2023354_+	NapC/NirT family cytochrome c	NA	NA	NA	NA	NA
WP_001229400.1|2023378_2025808_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA	NA
WP_000564755.1|2025972_2026944_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_000019588.1|2026940_2027684_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.0	4.6e-24
WP_005048647.1|2027724_2028120_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_000905997.1|2028172_2028523_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000747032.1|2028752_2029920_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_000528720.1|2029895_2030093_-	excisionase family protein	NA	Q8W657	Enterobacteria_phage	98.2	3.7e-26
WP_001030133.1|2030101_2030248_-	hypothetical protein	NA	A0A1B5FPC2	Escherichia_phage	95.8	1.4e-22
WP_000457719.1|2030251_2030494_-	DUF4222 domain-containing protein	NA	Q6H9Z8	Enterobacteria_phage	85.0	6.2e-31
WP_000586688.1|2030617_2031187_-	hypothetical protein	NA	A0A088C4R7	Shewanella_sp._phage	39.4	6.8e-28
WP_001099210.1|2031183_2031933_-	ORF6N domain-containing protein	NA	A0A1B5FPC0	Escherichia_phage	96.0	1.7e-135
WP_000755956.1|2031976_2032804_-	hypothetical protein	NA	Q8W654	Enterobacteria_phage	94.5	2.3e-125
WP_000248820.1|2034524_2034662_+	hypothetical protein	NA	Q8W639	Enterobacteria_phage	100.0	1.9e-16
WP_001215517.1|2034661_2035021_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	66.1	8.3e-40
WP_001064885.1|2035017_2035707_+	antiterminator	NA	I6PDF8	Cronobacter_phage	49.4	2.9e-57
WP_005119583.1|2036890_2038087_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_001074423.1|2038350_2038752_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	66.2	3.3e-37
WP_000753026.1|2038763_2039135_+|tail	tail attachment protein	tail	NA	NA	NA	NA
WP_000677116.1|2039121_2039712_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	78.2	7.4e-78
WP_001079407.1|2039708_2040110_+|tail	tail protein	tail	A0A291AWY2	Escherichia_phage	94.0	1.1e-69
WP_000211126.1|2040120_2040861_+	Ig-like domain-containing protein	NA	A5LH35	Enterobacteria_phage	96.7	1.5e-128
WP_000478927.1|2040919_2041306_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	92.2	1.4e-61
WP_001161004.1|2041314_2041644_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	99.1	1.3e-55
WP_000371983.1|2041615_2044657_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	86.5	0.0e+00
WP_000447264.1|2044656_2044986_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	97.2	2.4e-57
WP_001152490.1|2044985_2045684_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	89.7	8.4e-121
WP_000194740.1|2045688_2046432_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.7	6.8e-145
WP_000090877.1|2046368_2046971_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	85.6	8.1e-88
WP_000515521.1|2047031_2050511_+	host specificity protein J	NA	A5LH43	Enterobacteria_phage	87.3	0.0e+00
WP_001230481.1|2050578_2051178_+	Ail/Lom family outer membrane beta-barrel protein	NA	H6WZM8	Escherichia_phage	93.0	1.8e-103
WP_094112727.1|2052603_2053227_+	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	78.1	1.7e-80
WP_000938097.1|2053406_2055158_-	T3SS effector E3 ubiquitin-protein ligase IpaH2	NA	NA	NA	NA	NA
WP_001210039.1|2055756_2056005_-	DinI-like family protein	NA	K7PLW4	Enterobacteria_phage	98.8	4.1e-38
WP_005119583.1|2056733_2057930_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000891627.1|2058121_2058376_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_001258670.1|2058685_2060458_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_001300367.1|2060575_2061028_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_000907248.1|2061056_2061797_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000974712.1|2061831_2062353_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.0e-10
WP_001024930.1|2062354_2062957_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA	NA
WP_001386853.1|2063026_2063092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000580324.1|2063230_2063842_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_000568525.1|2063850_2064861_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.2	2.8e-08
WP_000571470.1|2065007_2065793_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
WP_000202992.1|2065789_2066545_-	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	28.3	3.8e-18
WP_001342995.1|2066623_2067556_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_001184045.1|2067571_2068894_+	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	1.2e-14
WP_000448385.1|2069013_2069985_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
WP_000044417.1|2070115_2071558_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_001056694.1|2071685_2072555_-	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA	NA
WP_000301736.1|2072892_2074368_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.3	9.9e-79
WP_001069479.1|2074602_2076414_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
WP_000800512.1|2076450_2077092_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_112324871.1|2077147_2078326_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_005047608.1|2078816_2079173_+	protein YebF	NA	NA	NA	NA	NA
WP_000024751.1|2079499_2080159_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_000936980.1|2080368_2082429_+	oligopeptidase B	NA	NA	NA	NA	NA
WP_000944268.1|2082425_2083088_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	41.6	3.5e-07
WP_000916763.1|2083869_2084100_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	61.8	1.3e-14
WP_000168747.1|2084238_2084613_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000976476.1|2085501_2085843_+	YebY family protein	NA	NA	NA	NA	NA
WP_001189099.1|2086920_2087313_-|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	54.8	2.0e-31
WP_005127484.1|2087278_2087560_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	42.4	9.8e-12
WP_000683016.1|2090995_2092609_+	murein tripeptide ABC transporter substrate-binding protein MppA	NA	NA	NA	NA	NA
2087634:2088526	attR	TGAGGTGTACTGGCAATAGCGGACACTACCATTTGTTCTTTTTTTAAGCAGCCATCTGATGATATTTTTCCCTGAAGGCTGCCGGGGAGATATTCCCCAGACGAGAGTGACGACGCTGACGATTGTAGAAAATCTCAATGTATTCCCGTATTACTGAGATGGCTTCATCCCGGTTATTAAAACGATAGTGGCTCAGGCTCTCATTTTTCAGCGTTCCCCAGAAGCTTTCCATCGGAGCGTTGTCGTAACAGTTACCTTTACGCGACATTGATGTTTTCAGACCAGACTGCTCCTGTATGACCCGGTAATCGTATGCGCAGTACTGTGAACCTCGATCAGAGTGGTGGATTAGCCCGGCAGGTGGGCGCTGGCTCCTGAGCGCCATAAACAGGGCTTTACCTGTCAGCTCTTTTGTCATGCGCTCTCCCATGGCGTAGCCGACAATTTCGCACGTATAAACATCTTTGATGCCAGCGAGGTACAACCATCCCTCCTGTGTGGCAACATACGTCAGGTCCGCCACCCAGACCTGATTTGGTGCTGTAGGAGCGAACGTCTGGTTCAGCAGATTTGGCGCAACTGGCAGATTGTGGTTCGGGTTCGTAGTCGCTCTGAACTTGCGTTTCTGCTTACAGCGTAGCCTCAGCTCCTTACGAAGACGTGCCAGTCGGTCACGACCAACGATGATGCCATTCTCTGCCAGCTCCGTCTGGAGCCGCCGGGTTCCATATGTTTCGCGAGTGCGGATATGTGCCACCTTAATCTCCAGTTTTAGCCGCTCATCACTTTGTTTTCTGTCTGAGGGTTCATGCTGTACCCAGTTGTAATAACCGCTCCTGGATACACCAAATACCTGACACATCGCTTCAATGGGAAATTGTTGTCGCCATTGT	NA	NA	NA	NA
WP_000559908.1|2092659_2093691_-	low conductance mechanosensitive channel YnaI	NA	NA	NA	NA	NA
WP_000937573.1|2094366_2095554_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000124119.1|2095553_2095919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001262123.1|2097322_2098273_-	universal stress protein UspE	NA	NA	NA	NA	NA
WP_000611911.1|2098424_2099177_-	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA	NA
WP_000945011.1|2099371_2099887_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.8	1.1e-24
WP_000156575.1|2100430_2101246_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000587200.1|2101342_2101990_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_039057289.1|2102153_2103353_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000957853.1|2103362_2103551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011069405.1|2104055_2105510_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_000387377.1|2107834_2108818_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_000123730.1|2109295_2110663_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.2e-51
WP_000081423.1|2110791_2111727_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	3.2e-144
>prophage 8
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2130418	2175329	4723195	transposase	Acinetobacter_phage(27.27%)	35	NA	NA
WP_094081518.1|2130418_2131574_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	2.0e-66
WP_094081540.1|2132447_2133604_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	3.0e-67
WP_000048979.1|2134366_2134972_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_000139510.1|2135172_2139075_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SIV3	Klosneuvirus	29.5	2.2e-53
WP_000747032.1|2140032_2141201_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_000115920.1|2142475_2143915_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000428998.1|2145145_2145676_+	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	44.9	3.1e-19
WP_000731833.1|2145920_2146094_+	periplasmic protein	NA	A0A0R6PKG1	Moraxella_phage	67.4	4.4e-07
WP_023517637.1|2146165_2146315_-	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA	NA
WP_086020934.1|2146689_2147845_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	1.4e-67
WP_094081542.1|2147912_2149140_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_001098548.1|2150762_2152403_+	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA	NA
WP_000414573.1|2152440_2153364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000013771.1|2153580_2154924_+	VOC family protein	NA	NA	NA	NA	NA
WP_000375966.1|2155148_2156804_+	glucan biosynthesis protein OpgD	NA	NA	NA	NA	NA
WP_001296778.1|2156943_2157168_+	YdcH family protein	NA	NA	NA	NA	NA
WP_000140890.1|2157230_2157767_+	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA	NA
WP_001234071.1|2157761_2158742_-	acetyltransferase	NA	NA	NA	NA	NA
WP_005047890.1|2158865_2159858_+	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA	NA
WP_000586723.1|2159854_2160448_+	tellurite resistance methyltransferase TehB	NA	NA	NA	NA	NA
WP_001260991.1|2160750_2161407_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_077763632.1|2161424_2161931_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	58.4	1.3e-41
WP_000937573.1|2163019_2164207_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000555458.1|2165045_2165840_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001163923.1|2165861_2167286_+	aminobutyraldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000867989.1|2167495_2168305_+	CatB-related O-acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	41.0	5.9e-17
WP_001303494.1|2168706_2168802_-	stress response membrane protein YncL	NA	NA	NA	NA	NA
WP_032155959.1|2168996_2169170_+	orphan toxin OrtT	NA	NA	NA	NA	NA
WP_000018633.1|2169255_2169489_+	YdcY family protein	NA	NA	NA	NA	NA
WP_001076516.1|2169489_2169939_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000027560.1|2169935_2170454_-	L-methionine sulfoximine/L-methionine sulfone acetyltransferase	NA	NA	NA	NA	NA
WP_094081542.1|2170612_2171840_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_005050386.1|2171970_2173008_+	NADPH-dependent curcumin/dihydrocurcumin reductase	NA	NA	NA	NA	NA
WP_005050384.1|2173205_2173871_+	colanic acid/biofilm transcriptional regulator McbR	NA	NA	NA	NA	NA
WP_000937573.1|2174141_2175329_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2328082	2358407	4723195	protease,integrase,transposase	Escherichia_phage(30.0%)	28	2328830:2328844	2362177:2362191
WP_001260855.1|2328082_2328904_-|protease	serine protease	protease	NA	NA	NA	NA
2328830:2328844	attL	GTCTGGTTTATCTGC	NA	NA	NA	NA
WP_000233090.1|2329003_2329087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000743950.1|2329179_2329515_-	acid shock protein	NA	NA	NA	NA	NA
WP_001019538.1|2331271_2332192_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000225287.1|2332326_2333547_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA	NA
WP_000919213.1|2333671_2334367_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_073828063.1|2334319_2335612_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
WP_000148710.1|2335770_2336385_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
WP_154074680.1|2336427_2337282_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_000213020.1|2337283_2337901_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
WP_112324862.1|2340010_2341120_-	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	46.6	2.2e-83
WP_171765283.1|2341102_2342692_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_154074681.1|2343065_2343206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001340280.1|2343242_2343920_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_000624622.1|2343919_2344267_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_000381321.1|2344286_2345858_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_089569706.1|2346744_2347260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044068512.1|2347249_2347747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_089569707.1|2348065_2348557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_089569708.1|2348633_2349623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005084471.1|2351442_2351763_-	dimethylsulfoxide reductase	NA	NA	NA	NA	NA
WP_005050191.1|2351961_2352267_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
WP_001321287.1|2352374_2353085_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
WP_000705197.1|2353682_2354024_-	DUF1283 family protein	NA	NA	NA	NA	NA
WP_001295395.1|2354158_2354485_+	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	7.6e-24
WP_005050183.1|2354690_2355905_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	2.4e-46
WP_085949497.1|2355981_2357128_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.6	2.3e-147
WP_094081542.1|2357178_2358407_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
2362177:2362191	attR	GCAGATAAACCAGAC	NA	NA	NA	NA
>prophage 10
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2390517	2401273	4723195	transposase,holin	Escherichia_phage(23.08%)	15	NA	NA
WP_000214712.1|2390517_2390721_+	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	55.2	1.6e-11
WP_000527804.1|2390756_2392217_-	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	1.1e-42
WP_094105058.1|2393386_2394542_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	7.5e-66
WP_071818640.1|2394539_2394845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000534858.1|2394869_2395109_+	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_000323025.1|2395108_2395396_+	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_000813254.1|2395467_2395623_+	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_000980987.1|2395840_2396092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001265249.1|2396438_2397488_+	DUF968 domain-containing protein	NA	U5P0K4	Shigella_phage	54.3	3.2e-108
WP_000904111.1|2397500_2397857_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	62.7	6.1e-35
WP_000762882.1|2397871_2398693_+	antitermination protein	NA	K7P7B9	Enterobacteria_phage	58.6	6.1e-78
WP_000871291.1|2400002_2400338_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	74.8	5.2e-44
WP_000874243.1|2400597_2400786_+	DUF1737 domain-containing protein	NA	H6WZJ9	Escherichia_phage	95.2	7.2e-27
WP_001323614.1|2400782_2400944_+	hypothetical protein	NA	Q08JA2	Stx2-converting_phage	91.3	5.4e-15
WP_000372594.1|2401093_2401273_+|holin	class II holin family protein	holin	A0A2R2Z340	Escherichia_phage	91.5	4.1e-24
>prophage 11
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2518827	2577005	4723195	tRNA,transposase,tail,integrase,protease	Escherichia_phage(38.89%)	47	2553515:2553574	2578331:2579099
WP_001220997.1|2518827_2519523_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_112306982.1|2519580_2521491_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.6	1.9e-90
WP_001295493.1|2521622_2521967_+	RidA family protein	NA	NA	NA	NA	NA
WP_001307845.1|2522328_2522688_+	DUF1889 family protein	NA	NA	NA	NA	NA
WP_000457325.1|2522807_2522987_-	YoaH family protein	NA	NA	NA	NA	NA
WP_000855039.1|2523060_2524422_+	aminodeoxychorismate synthase component 1	NA	S4VT78	Pandoravirus	41.7	6.4e-40
WP_000456710.1|2524425_2525004_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_000624314.1|2525187_2526552_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_005049862.1|2526682_2528281_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
WP_000394974.1|2528284_2529835_-	CNNM family cation transport protein YoaE	NA	A0A0R6PEZ3	Moraxella_phage	45.4	1.7e-41
WP_000150543.1|2530297_2531269_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
WP_000406926.1|2531331_2532132_+	PTS mannose transporter subunit IIC	NA	NA	NA	NA	NA
WP_001331209.1|2532144_2532996_+	PTS mannose transporter subunit IID	NA	NA	NA	NA	NA
WP_000156246.1|2533050_2533527_+	DUF986 domain-containing protein	NA	NA	NA	NA	NA
WP_001668667.1|2534715_2535282_+	manganese efflux pump MntP	NA	NA	NA	NA	NA
WP_000010128.1|2535278_2536088_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA	NA
WP_001062678.1|2536253_2536463_-	transcription antiterminator/RNA stability regulator CspE	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
WP_001295496.1|2536475_2536619_-	YobF family protein	NA	NA	NA	NA	NA
WP_001006860.1|2537288_2537576_-	YebO family protein	NA	NA	NA	NA	NA
WP_000714550.1|2537650_2537794_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA	NA
WP_001211010.1|2537952_2538192_+	membrane protein	NA	NA	NA	NA	NA
WP_001262181.1|2538334_2539126_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA	NA
WP_001127218.1|2539302_2540676_+	MFS transporter	NA	NA	NA	NA	NA
WP_000984517.1|2540721_2541603_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_001055799.1|2541794_2543843_-	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	1.2e-85
WP_000431370.1|2543862_2544561_-	RNA chaperone ProQ	NA	NA	NA	NA	NA
WP_001043881.1|2544657_2545155_-	L-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
WP_112324878.1|2545284_2546568_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA	NA
WP_001295499.1|2550793_2551030_+	DUF1480 family protein	NA	NA	NA	NA	NA
WP_005049838.1|2551134_2551326_+	YebW family protein	NA	NA	NA	NA	NA
WP_094081495.1|2551582_2552739_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
2553515:2553574	attL	GGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTC	NA	NA	NA	NA
WP_154074684.1|2554763_2556407_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_000551130.1|2556586_2557210_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	77.0	1.1e-79
WP_094105053.1|2559818_2561091_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	3.0e-177
WP_000560226.1|2561168_2561390_+	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	97.3	6.9e-37
WP_000245528.1|2561383_2561560_+	hypothetical protein	NA	A0A0U2SHB5	Escherichia_phage	93.1	9.7e-26
WP_005049830.1|2561634_2561910_+	hypothetical protein	NA	A0A0U2QW85	Escherichia_phage	93.4	4.4e-41
WP_005135630.1|2564736_2564997_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	88.1	2.8e-37
WP_094081542.1|2565400_2566628_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_005049823.1|2568767_2568935_+	excisionase family protein	NA	A0A0U2RY08	Escherichia_phage	100.0	1.3e-27
WP_000443254.1|2569910_2570516_+|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.0	7.3e-113
WP_000555620.1|2570947_2571862_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA	NA
WP_000983722.1|2571861_2572689_+	iron/manganese ABC transporter ATP-binding protein SitB	NA	G9BWD6	Planktothrix_phage	28.5	3.8e-11
WP_001101728.1|2572685_2573543_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA	NA
WP_000968134.1|2573539_2574397_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA	NA
WP_154074685.1|2574597_2575221_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	79.1	5.2e-82
WP_000902877.1|2576459_2577005_-|tail	tail fiber assembly protein	tail	Q8W612	Enterobacteria_phage	73.1	2.5e-72
2578331:2579099	attR	GGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCGTACCAGCCTTGCCAGATGTTGTCTCAGATTCAGATTATGTCGCTCAATGCGCTGAGTGTAACGCTTGCTGATAACGTGCAGCTTTCCCTTCAGGCGTGATTCATACAGCGGCCAGCCATCCGTCATCCATACCACGACCTCAAAGGCCGACAGCAGGCTCAGAAGACGCTCCAGTGTGGCCAGAGTGCGTTCACCGAAGACGTGCGCCACAACCGTCCTCCGTATCCTGTCATACGCGTAAAACAGCCAGCGCTGACGTGATTTAGCACCGACGTAGCCCCAATGTTCGTCCATTTCAGCGCAGACAATCACATCACTGCCCGGTTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAACCGTGTTGAGGCCAACGCCCATAATGCGTGCACTGGCGCGACATCCGACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGCTGAGAGGCGGTGTAAGTGAACTGTAGTTGCCATGTTTTACGGCAATGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACGCCTTCAGTAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCC	NA	NA	NA	NA
>prophage 12
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2582992	2604483	4723195	transposase,integrase	Escherichia_phage(52.63%)	23	2578331:2578390	2593161:2593929
2578331:2578390	attL	GGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTC	NA	NA	NA	NA
WP_000381321.1|2582992_2584564_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_000624622.1|2584583_2584931_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_001340280.1|2584930_2585608_-|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_000615491.1|2586598_2588203_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_045178261.1|2588836_2589343_-	ORF6N domain-containing protein	NA	A0A0N7C203	Escherichia_phage	73.2	1.9e-42
WP_094081550.1|2589389_2590546_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_005049799.1|2590607_2590793_-	hypothetical protein	NA	A0A291AWU3	Escherichia_phage	63.4	1.5e-05
WP_000640143.1|2590933_2591488_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	70.5	3.7e-71
WP_073828270.1|2591484_2591775_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	88.5	5.7e-47
WP_000940329.1|2591774_2592374_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	94.5	1.4e-108
WP_000018421.1|2593710_2593923_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	92.9	8.1e-27
WP_000610655.1|2594320_2594686_-	DUF551 domain-containing protein	NA	Q08J61	Stx2-converting_phage	53.7	6.1e-30
2593161:2593929	attR	GACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTACTAACAGGATGCTCTGACTCGCAATTCATCCAGCAGTTTATCATTTCCCATAATGTCACTTACCCTCATCGGTAAAAAAATTGCCTTTCGACCATTACGATACATTATTGATTTTGGGGTTTCAGGGAAGTAATCCATTTCGACTATAACTGACAGGTCATCACGACGTATGACTGCGTATTTGCTACTAAATAGTTTCTTTATTTTTTCCACGATGCCCCCAGGTTTATAAGTACAAACGGTTATATCCACATAGAGACAAAAATATTAATCTGATAAATATTTATTTCACGCCGTATATTTGATTGTTTAATGTGCAAGTACAATGACTTTTATTTTTTGTTGTGTATATAATCAAATATATGGTTATTTTTCACCCTGCGTATTCAGCACGCAACAAAAAACCCGCCGAAGCGGGTTTAGTGCGGGTGCGTTGAGGATGCCTGACACATGAGAGGTGGCGAGGGATTTCTCCCCCGCCTGGTCTCTTACTCCTCAGGTTCGTAAGCTGTGAAGACAGCGACCTCCGTCTGGCCGGTTCGGATTCGTACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCCGTCACTATGACGGTTAAACAGATGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTCATAGCCTGCTTCTCCTTGCCTTTCGGCACGTAAGAGGCTAACCTACATTTGTGAGACATAGATTG	NA	NA	NA	NA
WP_000208062.1|2594685_2595351_-	hypothetical protein	NA	A0A076G611	Escherichia_phage	44.9	6.1e-36
WP_001229297.1|2595347_2595713_-	HNH endonuclease	NA	A0A2R2Z2X9	Escherichia_phage	98.3	2.1e-67
WP_000256998.1|2595714_2595933_-	DUF4014 family protein	NA	A0A1I9LJM2	Stx_converting_phage	90.3	1.2e-28
WP_005048249.1|2596025_2596382_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	97.5	5.1e-58
WP_001118167.1|2596439_2596862_-	DUF977 family protein	NA	A0A2I6TCA7	Escherichia_phage	76.6	5.9e-53
WP_000788996.1|2596876_2597623_-	ATP-binding protein	NA	V5UQI5	Shigella_phage	89.2	2.1e-122
WP_094105053.1|2598416_2599689_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	3.0e-177
WP_094081493.1|2600217_2601373_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_000817713.1|2601370_2601853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000981715.1|2601990_2602911_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005119583.1|2603286_2604483_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2736310	2809826	4723195	tRNA,head,transposase,tail,protease,portal,terminase	uncultured_Caudovirales_phage(43.75%)	67	NA	NA
WP_000152949.1|2736310_2736895_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_000505866.1|2737011_2738103_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_005049659.1|2738947_2741815_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_024259225.1|2741914_2743834_-	PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR	NA	NA	NA	NA	NA
WP_000733721.1|2744061_2745132_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
WP_005049657.1|2745142_2745775_+	dihydroxyacetone kinase ADP-binding subunit DhaL	NA	NA	NA	NA	NA
WP_005061971.1|2745785_2747204_+	dihydroxyacetone kinase subunit DhaM	NA	NA	NA	NA	NA
WP_000841729.1|2747523_2749221_+	alpha,alpha-trehalase	NA	NA	NA	NA	NA
WP_001123164.1|2751582_2752605_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001223651.1|2752604_2753585_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_000173321.1|2753581_2754340_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.7	2.2e-13
WP_000903995.1|2754349_2755159_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000576842.1|2755158_2756013_+	ModD protein	NA	NA	NA	NA	NA
WP_005084083.1|2756038_2756596_+	Plug domain-containing protein	NA	NA	NA	NA	NA
WP_005049653.1|2756532_2757993_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_000511317.1|2758042_2758297_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_000020162.1|2758497_2759232_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_001295616.1|2759233_2759845_-	membrane-bound lytic murein transglycosylase EmtA	NA	NA	NA	NA	NA
WP_000051626.1|2759944_2760859_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_000340206.1|2760953_2762690_+	potassium/proton antiporter	NA	NA	NA	NA	NA
WP_000197853.1|2764882_2765953_-	catabolic alanine racemase DadX	NA	NA	NA	NA	NA
WP_001266897.1|2765962_2767261_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_000234823.1|2769175_2769895_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA	NA
WP_000406409.1|2770115_2771657_+	Na(+)/H(+) antiporter NhaB	NA	NA	NA	NA	NA
WP_000943462.1|2771802_2772333_+	disulfide bond formation protein DsbB	NA	NA	NA	NA	NA
WP_000457611.1|2772378_2773647_-	DNA polymerase V catalytic protein	NA	I6RSM4	Salmonella_phage	83.2	2.3e-209
WP_000897378.1|2773646_2774066_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	62.1	6.9e-38
WP_000807626.1|2775545_2776007_-	YcgN family cysteine cluster protein	NA	NA	NA	NA	NA
WP_000284272.1|2776083_2776743_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_005049638.1|2776814_2777108_-	YcgL domain-containing protein	NA	NA	NA	NA	NA
WP_005061990.1|2777349_2777490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094081514.1|2777486_2778649_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	6.8e-51
WP_094081542.1|2779375_2780603_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_005047937.1|2781326_2782022_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_000101055.1|2782045_2782858_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_001185665.1|2782861_2783128_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_001131446.1|2783878_2783998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014532223.1|2783958_2784144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000122462.1|2784244_2784418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005047943.1|2784479_2784764_+	glycine zipper family protein	NA	NA	NA	NA	NA
WP_000979977.1|2784767_2785103_+	YmgD family protein	NA	NA	NA	NA	NA
WP_011110579.1|2785159_2787481_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	43.5	3.2e-92
WP_005047951.1|2787597_2787807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001246473.1|2788557_2790081_-	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA	NA
WP_000444487.1|2790978_2792229_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	100.0	3.8e-23
WP_001248670.1|2792400_2793054_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000476093.1|2793063_2793525_+	phosphatase NudJ	NA	NA	NA	NA	NA
WP_005047976.1|2793578_2794685_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_005047980.1|2794720_2795362_+	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_000423725.1|2795365_2796736_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	7.2e-108
WP_001265481.1|2796904_2797576_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_000735425.1|2797575_2799036_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_128568578.1|2799482_2799671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133415.1|2799832_2800114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000127901.1|2800127_2801789_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	81.4	4.4e-277
WP_029716858.1|2801772_2802099_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	79.6	9.2e-46
WP_000174068.1|2802154_2802337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001145905.1|2802320_2802761_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	72.6	2.5e-62
WP_000134107.1|2802760_2803057_-|head,tail	phage head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	62.2	2.2e-30
WP_001020662.1|2803053_2803392_-|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	52.7	1.7e-31
WP_000267599.1|2803388_2804600_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	78.5	3.1e-187
WP_000504054.1|2804601_2805174_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	63.5	1.6e-61
WP_001132078.1|2806671_2806896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000126624.1|2807037_2807199_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_001294167.1|2807208_2807514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000557473.1|2807510_2807789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000761802.1|2808077_2809826_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	39.5	7.3e-89
>prophage 14
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2886466	2919729	4723195	transposase	Shigella_phage(50.0%)	24	NA	NA
WP_171767969.1|2886466_2887665_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	7.0e-67
WP_094081542.1|2889252_2890481_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_000747032.1|2891053_2892222_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_000818776.1|2892291_2892537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001189111.1|2894061_2895570_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_000747032.1|2896974_2898142_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_000124119.1|2899116_2899482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000937573.1|2899481_2900669_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_001295445.1|2901084_2903628_-	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA	NA
WP_011069327.1|2903620_2905156_-	glucans biosynthesis protein MdoG	NA	NA	NA	NA	NA
WP_001070350.1|2905549_2906707_+	glucans biosynthesis protein MdoC	NA	NA	NA	NA	NA
WP_011069326.1|2906714_2908196_-	cardiolipin synthase ClsC	NA	NA	NA	NA	NA
WP_000857408.1|2908137_2908671_-	O-acetyl-ADP-ribose deacetylase	NA	Q71G61	Red_sea_bream_iridovirus	40.2	7.8e-26
WP_000489563.1|2908765_2909077_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_000992821.1|2909197_2909530_-	curli assembly protein CsgC	NA	NA	NA	NA	NA
WP_001144017.1|2909588_2909954_-	curlin major subunit CsgA	NA	NA	NA	NA	NA
WP_005047380.1|2911229_2911685_-	curlin minor subunit CsgB	NA	NA	NA	NA	NA
WP_000481500.1|2912437_2913088_+	transcriptional regulator CsgD	NA	NA	NA	NA	NA
WP_000833291.1|2913092_2913482_+	curli production assembly/transport protein CsgE	NA	NA	NA	NA	NA
WP_001264088.1|2913506_2913923_+	curli production assembly/transport protein CsgF	NA	NA	NA	NA	NA
WP_001297187.1|2914788_2915280_-	DUF1097 domain-containing protein	NA	NA	NA	NA	NA
WP_001001915.1|2915381_2915936_-	molecular chaperone YcdY	NA	NA	NA	NA	NA
WP_000283673.1|2915959_2916697_-	zinc-binding phosphatase	NA	NA	NA	NA	NA
WP_001179707.1|2918724_2919729_-|transposase	IS110-like element ISSfl8 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	2925306	2991647	4723195	transposase,integrase	Stx2-converting_phage(37.5%)	51	2938572:2938586	2994167:2994181
WP_001298859.1|2925306_2926848_+|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
WP_001016257.1|2926862_2927609_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
WP_154074688.1|2930697_2931570_-	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
WP_000250228.1|2931654_2932572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813456.1|2933771_2934374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000235221.1|2934468_2934675_-	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_000840364.1|2934815_2935082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001344112.1|2935382_2935559_+	hemolysin activation protein	NA	NA	NA	NA	NA
WP_000221544.1|2936303_2936873_+	inovirus Gp2 family protein	NA	NA	NA	NA	NA
WP_000270978.1|2937132_2937534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001221615.1|2937521_2937956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001340280.1|2938396_2939074_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
2938572:2938586	attL	GGCCTTTGCCCTCAG	NA	NA	NA	NA
WP_000624622.1|2939073_2939421_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_000381321.1|2939440_2941012_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_171722645.1|2941014_2941398_+|transposase	transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	99.2	7.0e-61
WP_000612632.1|2941394_2941742_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	98.3	1.4e-60
WP_000998091.1|2941791_2943177_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	89.1	1.0e-258
WP_000823243.1|2943415_2944774_-	esterase-like activity of phytase family protein	NA	NA	NA	NA	NA
WP_000555341.1|2945506_2945764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283626.1|2946681_2947203_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
WP_001068910.1|2947199_2948153_+	fec operon regulator FecR	NA	NA	NA	NA	NA
WP_000188258.1|2948239_2950564_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA	NA
WP_112324879.1|2950608_2951511_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
WP_000125175.1|2951507_2952506_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA	NA
WP_000684856.1|2952502_2953459_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
WP_000175457.1|2953459_2954227_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
WP_000177057.1|2954784_2955042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160371899.1|2958774_2959617_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_000428546.1|2962670_2963264_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA	NA
WP_001089068.1|2963376_2964582_-	tetracycline efflux MFS transporter Tet(B)	NA	A0A2H4UVM2	Bodo_saltans_virus	24.4	3.0e-09
WP_000088605.1|2964663_2965287_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA	NA
WP_001284954.1|2965264_2965951_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000460651.1|2965958_2966345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049802299.1|2966337_2966601_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_000412211.1|2967573_2968233_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
WP_000656305.1|2968433_2968811_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001138064.1|2968877_2971844_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
WP_000147567.1|2971846_2972407_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
WP_000454193.1|2972532_2972883_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_000845048.1|2973085_2974099_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001334766.1|2974305_2975136_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
WP_001209508.1|2975248_2976040_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
WP_000262203.1|2977915_2979214_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_000677245.1|2979279_2979999_-	amino acid racemase	NA	NA	NA	NA	NA
WP_001333359.1|2980343_2981288_+	hypochlorite stress DNA-binding transcriptional regulator HypT	NA	NA	NA	NA	NA
WP_042196155.1|2984284_2984491_-	helicase	NA	NA	NA	NA	NA
WP_000282110.1|2984597_2985161_-	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_001258873.1|2986535_2988371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070931.1|2988471_2988759_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
WP_005067490.1|2988730_2990260_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_000279879.1|2990429_2991647_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	34.4	1.7e-44
2994167:2994181	attR	CTGAGGGCAAAGGCC	NA	NA	NA	NA
>prophage 16
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	3059164	3138011	4723195	protease,tRNA,transposase	Acinetobacter_phage(14.29%)	55	NA	NA
WP_000156489.1|3059164_3060925_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_005047466.1|3060993_3061512_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_011110566.1|3061581_3061749_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759120.1|3062004_3062568_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000445541.1|3062564_3064205_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333176.1|3064209_3065463_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053116.1|3065592_3067500_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	8.3e-54
WP_001086554.1|3067511_3069620_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000224274.1|3069863_3070973_+	6-N-hydroxylaminopurine resistance protein YcbX	NA	NA	NA	NA	NA
WP_004991542.1|3070969_3071512_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_001370288.1|3071685_3072696_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001111452.1|3072806_3073544_-	fimbrial chaperone	NA	NA	NA	NA	NA
WP_000919489.1|3073509_3074025_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_005083752.1|3074670_3075654_-	fimbrial protein	NA	NA	NA	NA	NA
WP_112324876.1|3075644_3078245_-	fimbrial biogenesis usher protein	NA	NA	NA	NA	NA
WP_001263929.1|3080287_3080863_+	NADPH-dependent FMN reductase	NA	NA	NA	NA	NA
WP_001244319.1|3080855_3081815_+	aliphatic sulfonate ABC transporter substrate-binding protein SsuA	NA	NA	NA	NA	NA
WP_000055999.1|3081811_3082957_+	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA	NA
WP_000235193.1|3082968_3083151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094081542.1|3083239_3084467_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_001090476.1|3085092_3085860_+	aliphatic sulfonates ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	4.1e-28
WP_000193826.1|3086066_3088682_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	4.1e-19
WP_001297200.1|3088947_3090150_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000117881.1|3090318_3091719_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	36.1	5.3e-82
WP_000977934.1|3092319_3093408_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	54.3	1.8e-98
WP_000462669.1|3093592_3094783_+	aspartate transaminase	NA	NA	NA	NA	NA
WP_001109487.1|3095005_3095653_-	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA	NA
WP_001295932.1|3095679_3096228_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	7.0e-06
WP_000925982.1|3096408_3098256_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000483773.1|3098463_3099810_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000572706.1|3099954_3104415_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_001295931.1|3104414_3105119_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_001288850.1|3105099_3106422_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_005047510.1|3106418_3107204_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_000899599.1|3107339_3108119_+	envelope biogenesis factor ElyC	NA	NA	NA	NA	NA
WP_000436922.1|3108095_3108989_-	YcbJ family phosphotransferase	NA	NA	NA	NA	NA
WP_000011599.1|3109142_3109889_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000350058.1|3109885_3110068_-	protein YcaR	NA	NA	NA	NA	NA
WP_000056529.1|3110119_3111352_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000570540.1|3111388_3112375_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_000551266.1|3112371_3114120_-	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	29.8	3.3e-57
WP_000167336.1|3116622_3116907_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	3.2e-10
WP_000140327.1|3117066_3118740_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000125013.1|3118850_3119534_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001295345.1|3119706_3120471_-	metallopeptidase YcaL	NA	NA	NA	NA	NA
WP_000483773.1|3120606_3121953_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000445222.1|3122078_3123362_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000057149.1|3123432_3124521_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.8	3.5e-81
WP_005051051.1|3125475_3127236_+	YcaO-like family protein	NA	NA	NA	NA	NA
WP_000642544.1|3127641_3128499_+	formate transporter FocA	NA	NA	NA	NA	NA
WP_001292813.1|3128553_3130836_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.2	4.9e-162
WP_000111043.1|3131027_3131768_+	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	8.0e-21
WP_154074689.1|3132176_3133331_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	6.8e-67
WP_111779742.1|3135801_3136446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000638232.1|3137822_3138011_-|transposase	transposase domain-containing protein	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.8	4.5e-05
>prophage 17
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	3141338	3209494	4723195	transposase,tRNA,integrase,protease	Stx2-converting_phage(23.53%)	53	3139259:3139318	3173571:3175164
3139259:3139318	attL	GTATTAATGATATCCAGTTGCTCTGAGATTGTTTCCCCCATTTCTTTCAGAACACCTCCA	NA	NA	NA	NA
WP_094081518.1|3141338_3142494_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.4	2.0e-66
WP_024219169.1|3142595_3143477_+|integrase	tyrosine-type recombinase/integrase	integrase	K7P6P6	Enterobacteria_phage	99.7	7.2e-162
WP_001091542.1|3143611_3144895_+	putative acyl-CoA thioester hydrolase	NA	NA	NA	NA	NA
WP_000593940.1|3145035_3147216_-	hydratase	NA	NA	NA	NA	NA
WP_001036463.1|3147398_3148832_-	anion permease	NA	NA	NA	NA	NA
WP_000723652.1|3148907_3149960_-	4-oxalomesaconate tautomerase	NA	NA	NA	NA	NA
WP_000815445.1|3151137_3152133_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_005061694.1|3152392_3152524_-	hypothetical protein	NA	A0A0C4UR34	Shigella_phage	86.7	2.6e-07
WP_038404204.1|3153014_3154841_+	invasion protein	NA	NA	NA	NA	NA
WP_064198856.1|3155020_3155638_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	77.0	1.1e-79
WP_094081550.1|3155703_3156859_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_094105045.1|3157872_3159029_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	6.8e-67
WP_000935590.1|3159542_3160391_-	Rha family phage regulatory protein	NA	A0A0P0ZE80	Stx2-converting_phage	57.0	9.7e-55
WP_171769591.1|3160938_3162139_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	1.1e-171
WP_001340280.1|3162189_3162867_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_000624622.1|3162866_3163214_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_000381321.1|3163233_3164805_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_001005968.1|3165115_3165319_-	hypothetical protein	NA	I6PDF6	Cronobacter_phage	82.5	1.0e-10
WP_001091985.1|3165320_3165476_-	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	5.2e-07
WP_000787424.1|3165678_3166086_-	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	49.6	1.7e-28
WP_000912291.1|3166162_3166390_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000702036.1|3166373_3166796_+	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	93.6	3.8e-68
WP_001118167.1|3168418_3168841_+	DUF977 family protein	NA	A0A2I6TCA7	Escherichia_phage	76.6	5.9e-53
WP_005048249.1|3168898_3169255_+	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	97.5	5.1e-58
WP_029716636.1|3169423_3170089_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_000882657.1|3170259_3170472_+	type I toxin-antitoxin system Hok family toxin	NA	A0A0P0ZAX5	Stx2-converting_phage	90.0	4.0e-26
WP_000747032.1|3170754_3171922_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_005063916.1|3172462_3174064_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.6	1.2e-146
WP_005048975.1|3174060_3174411_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	68.7	3.5e-27
WP_001088287.1|3174407_3175082_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.1	5.8e-10
WP_000109301.1|3175394_3176543_-	MFS transporter	NA	NA	NA	NA	NA
3173571:3175164	attR	GTATTAATGATATCCAGTTGCTCTGAGATTGTTTCCCCCATTTCTTTCAGAACACCTCCACAGGCCGGGCAACTGGTTTCAGCAGGCAGAAGGCGATGTGTCTCCCGGGGAAGTTCTGCCGGCAGCGGTTTTCGTGAAGATTTTCGTCCCGGGAATTCAGGCTTACTGGCGATCGGGTTTTCTGACGGGGGACTGGTGTCAGGTGAATCTGTGACTGACGATGCATCTTCCAGAAGATTTCTGGCTGTGTTCAGCCGGTTTTCCAGTTCCGACAGTCGTTTTTCTGCCTGTCGGATCTGATTTTCAAGCTTATGACGCTTTTTCTCTGAACTCTGGCCGAACAACATACGACGCAACCTGTCGAGTTGCGCTTTCAGCCGTTCAATTTCCTGCTCATAGCCCGCGACCTGACAGGCATACTGTCGAAGCCGACTCTGTTGCTTACGCAACATGGCTTTAAGCAGCTCAATATCATCGGGGAGTTCATTGTTCATTCCCTTGTTTTATCACGGGTTATATCCGGATGCCAGGCCGTTCTGTCCGTTTGGGATGTTGCCACGCGATCCCCTCCAGTAGCATGGATAACTGAGCTGGCGTCAGGTGCACTTTCCCTTCCCGGGTCACCGGCCAGACGTTTGGTGAACAGGCATAACCCGTCACGATCGGCCCACAGTATTTTCACCATTTTGCCACTGCGGCCCCGGAAGACGAAGATATGCCCGGAGAACGGGTCATCTTTCAGCGTGTTCTGCACCTTCGAAGCCAGGCCATTGAAGCCACAACGCATATCTGTGATGCCAGCGATGATCCAGATTTTGGTACCGGTCGGCAGCGTTATCATCGGATACCCCCTTTCATTTCGCGGATTAGCGCCCGTAACAGTTCCGGAGTGAGAGGGTCAAACAGTTTTACCACACCTGATTTAAGATGCAGCTCGCACCGTGGGACGTTTCCGGGAGCCCCCTCAGGGCGCTCATCATGCTTGTTACGCCAGAAGGGATTTGTAACTGGTCTGGTCGGCTCCGGCGTATCAGTCAGTGCCACCGGGACAGGCATGCATTCCTGTATGTCATCATCGCTCAGTAAGCCGTCCTCGTACTGGCTTTTCCATTTAAACAGCAGGTTATTATTGATATCGTGTTCTCTGGCGATCCGGGCAACAACAGCCCCAGGCTGTAATGCCTGCTTAGCCAGACGGACCTTAAATTCACGGCTATAGCTGGTTCGCCGTTCTTTTCGCCATGAGCCTTCTCTGATTTGAGGCTCTGTTAATTCCTTCTTTCTGTTGGCATAAAGGATGGCGTCAAGTTGAGCGAATGAAACTGAATCGGGCAATGGCCATGCGATACCGGATGCAAGAAATCGCTGAAAAAGCGTATGTATTGTGGAATGACTGAGACCCAGACGCTGAGCGATGGCCCGGATGGTCAGTTTATCTTCAAATCTTAAACGCAGGGCATCAGGCAAATAAGAACGGAAGCAGGGAATATCTTTTGTTGTCTGGGAATTCATCGTTCGTGTCCATCAATATAGATGGGCGCGATTGTTGCCAGACAGGACAATTTTCACAAGACGTCGCTGATGGGGCGCTTAC	NA	NA	NA	NA
WP_000165870.1|3176857_3177484_+	hydrolase	NA	NA	NA	NA	NA
WP_000534651.1|3177519_3178311_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_000213098.1|3178312_3178930_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	60.6	5.0e-77
WP_000886683.1|3181623_3182916_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
WP_000067746.1|3183006_3184350_-	replication-associated recombination protein RarA	NA	G3MBE0	Bacillus_virus	41.0	4.3e-81
WP_001295343.1|3184360_3184972_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_000077083.1|3185126_3189155_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
WP_000228473.1|3189289_3189784_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
WP_000537402.1|3190327_3191293_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.3	3.2e-62
WP_001043574.1|3191415_3193182_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.0	4.6e-22
WP_001202220.1|3193182_3194904_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.4	9.9e-22
WP_073828142.1|3194945_3195650_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_001040187.1|3195934_3196153_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_000934033.1|3196896_3199173_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	4.3e-166
WP_000520781.1|3199203_3199524_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
WP_000410785.1|3199846_3200071_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
WP_000188161.1|3200143_3202090_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	39.6	5.5e-37
WP_000746446.1|3202086_3203202_-	macrolide transporter subunit MacA	NA	NA	NA	NA	NA
WP_005067329.1|3203352_3204309_+	VirK/YbjX family protein	NA	NA	NA	NA	NA
WP_000599806.1|3204305_3205964_-	ATP-dependent endonuclease	NA	NA	NA	NA	NA
WP_001298299.1|3207130_3207826_+	aquaporin Z	NA	NA	NA	NA	NA
WP_094081542.1|3208266_3209494_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
>prophage 18
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	3287094	3383046	4723195	head,transposase,tail,capsid,holin,integrase,terminase	Enterobacteria_phage(40.0%)	82	3319042:3319058	3388842:3388858
WP_000483773.1|3287094_3288441_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000990151.1|3290538_3291216_+	PKHD-type hydroxylase YbiX	NA	Q5GQB0	Synechococcus_phage	29.7	3.4e-18
WP_112324868.1|3291289_3291556_+	C4-type zinc finger protein YbiI	NA	E5G6L7	Salmonella_phage	44.1	2.0e-06
WP_000849301.1|3291820_3292081_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_000443521.1|3292309_3293395_-	hydroxycarboxylate dehydrogenase HcXB	NA	NA	NA	NA	NA
WP_000386531.1|3293535_3294498_-	DNA-binding protein YbiB	NA	NA	NA	NA	NA
WP_005048497.1|3294525_3296676_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	25.6	3.1e-41
WP_001145124.1|3296795_3297278_+	N-glycosidase YbiA	NA	A0A0H3TLU0	Faustovirus	52.0	1.3e-35
WP_001296991.1|3298900_3299572_+	DNA-binding transcriptional regulator CecR	NA	NA	NA	NA	NA
WP_000743444.1|3299574_3300570_+	secretion protein HlyD	NA	NA	NA	NA	NA
WP_000996107.1|3300562_3302299_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.8	2.3e-18
WP_000070107.1|3302291_3303425_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000469031.1|3303435_3304542_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000871982.1|3304503_3304914_-	YbhQ family protein	NA	NA	NA	NA	NA
WP_001113348.1|3305046_3305808_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_112324869.1|3305804_3307046_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_000045466.1|3307045_3308002_+	UPF0104 family protein	NA	NA	NA	NA	NA
WP_000446914.1|3308037_3308751_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_000373626.1|3308955_3309660_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_000852286.1|3309796_3310249_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA	NA
WP_000598624.1|3310250_3310496_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA	NA
WP_000080885.1|3310488_3310974_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_000084630.1|3310976_3311489_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_005048531.1|3311510_3312500_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_005048534.1|3312896_3313805_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	31.1	1.4e-27
WP_000042516.1|3313996_3316018_-	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_000044878.1|3316596_3317274_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_000246759.1|3317266_3318022_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA	NA
WP_000118810.1|3318008_3319163_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
3319042:3319058	attL	TACTGGCGATCATCCGC	NA	NA	NA	NA
WP_000951226.1|3319159_3320200_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_005048541.1|3320286_3321576_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.6	6.5e-18
WP_000767391.1|3321634_3322111_+	kinase inhibitor	NA	NA	NA	NA	NA
WP_000801164.1|3322693_3324457_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_094112727.1|3324636_3325260_-	DUF4376 domain-containing protein	NA	A0A0U2QQK4	Escherichia_phage	78.1	1.7e-80
WP_001230481.1|3326685_3327285_-	Ail/Lom family outer membrane beta-barrel protein	NA	H6WZM8	Escherichia_phage	93.0	1.8e-103
WP_000515521.1|3327352_3330832_-	host specificity protein J	NA	A5LH43	Enterobacteria_phage	87.3	0.0e+00
WP_000090877.1|3330892_3331495_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	85.6	8.1e-88
WP_000194740.1|3331431_3332175_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	94.7	6.8e-145
WP_001152490.1|3332179_3332878_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	89.7	8.4e-121
WP_000447264.1|3332877_3333207_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	97.2	2.4e-57
WP_000371983.1|3333206_3336248_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	86.5	0.0e+00
WP_001161004.1|3336219_3336549_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	99.1	1.3e-55
WP_000478927.1|3336557_3336944_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	92.2	1.4e-61
WP_000211126.1|3337002_3337743_-	Ig-like domain-containing protein	NA	A5LH35	Enterobacteria_phage	96.7	1.5e-128
WP_001079407.1|3337753_3338155_-|tail	tail protein	tail	A0A291AWY2	Escherichia_phage	94.0	1.1e-69
WP_000677140.1|3338151_3338736_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	87.6	6.0e-88
WP_000348593.1|3338722_3339100_-|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	57.3	2.5e-31
WP_000201488.1|3339111_3339498_-	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000522647.1|3339549_3340578_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	62.8	1.8e-116
WP_000256794.1|3340635_3340983_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	55.9	8.3e-21
WP_001254019.1|3341019_3342525_-	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	53.0	4.3e-98
WP_000259004.1|3344104_3344308_-|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	57.4	8.6e-10
WP_005049594.1|3344308_3346219_-|terminase	phage terminase large subunit family protein	terminase	K7P6G6	Enterobacteria_phage	63.9	4.9e-248
WP_094081529.1|3346541_3347698_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	3.4e-66
WP_128567432.1|3347749_3347944_-	hypothetical protein	NA	H6WRZ6	Salmonella_phage	100.0	2.5e-27
WP_112324896.1|3348196_3348694_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	98.8	6.9e-93
WP_005083349.1|3348759_3349389_-	hypothetical protein	NA	Q08JA0	Stx2-converting_phage	57.6	4.7e-30
WP_000839566.1|3349392_3349608_-|holin	class II holin family protein	holin	M1FN85	Enterobacteria_phage	94.4	2.2e-32
WP_001204832.1|3350410_3350791_-	antitermination protein	NA	A0A088CD47	Shigella_phage	87.9	8.2e-62
WP_000111769.1|3350783_3350984_-	protein ninH	NA	A0A088CC23	Shigella_phage	74.2	1.1e-20
WP_001064799.1|3351078_3351336_-	hypothetical protein	NA	Q8W639	Enterobacteria_phage	93.8	1.1e-33
WP_000211324.1|3351332_3352724_-	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	95.7	3.6e-256
WP_000988183.1|3352720_3353599_-	ATP-binding protein	NA	Q8W641	Enterobacteria_phage	95.6	3.0e-139
WP_000747032.1|3353691_3354859_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_001247854.1|3354834_3356694_-	toprim domain-containing protein	NA	B0FEC9	Escherichia_phage	98.0	0.0e+00
WP_094081550.1|3356969_3358125_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_000482655.1|3359438_3359861_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	63.4	9.4e-43
WP_001189111.1|3360458_3361967_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_085949497.1|3364577_3365724_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	92.6	2.3e-147
WP_005052888.1|3367222_3367969_-	thiol:disulfide interchange protein DsbG	NA	NA	NA	NA	NA
WP_000052796.1|3368340_3368904_+	alkyl hydroperoxide reductase subunit C	NA	NA	NA	NA	NA
WP_005052887.1|3369148_3370714_+	alkyl hydroperoxide reductase subunit F	NA	G3MA85	Bacillus_virus	34.6	7.6e-45
WP_000276167.1|3370834_3371263_-	universal stress protein UspG	NA	A0A1W6JNV4	Morganella_phage	39.2	1.9e-19
WP_000646166.1|3371483_3372722_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000089731.1|3372952_3373363_-	nucleoside diphosphate kinase regulator	NA	NA	NA	NA	NA
WP_005052886.1|3373591_3374398_-	ribonuclease I	NA	NA	NA	NA	NA
WP_000062461.1|3376024_3376903_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
WP_005052882.1|3377431_3378964_-	citrate lyase subunit alpha	NA	NA	NA	NA	NA
WP_005052881.1|3378974_3379883_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
WP_000700701.1|3379879_3380176_-	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
WP_000467686.1|3380190_3381249_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
WP_072075109.1|3382602_3383046_+|integrase	tyrosine-type recombinase/integrase	integrase	K7PHK0	Enterobacteria_phage	49.3	9.9e-35
3388842:3388858	attR	TACTGGCGATCATCCGC	NA	NA	NA	NA
>prophage 19
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	3521219	3577471	4723195	transposase,capsid,terminase	Salmonella_phage(27.78%)	44	NA	NA
WP_077696331.1|3521219_3521465_+	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	63.2	6.1e-18
WP_094081550.1|3523135_3524291_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_011069283.1|3524303_3524579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000627468.1|3524575_3525517_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	85.6	2.3e-153
WP_005060669.1|3525661_3526018_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	87.4	4.7e-51
WP_000873153.1|3526021_3527242_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	85.6	2.5e-192
WP_000184977.1|3527245_3527989_-|capsid	minor capsid protein	capsid	A0A0M4REK0	Salmonella_phage	84.4	5.3e-89
WP_000113500.1|3527879_3529346_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	91.0	9.6e-260
WP_005020049.1|3529345_3529579_-	hypothetical protein	NA	A0A077KAW0	Edwardsiella_phage	65.8	6.2e-20
WP_005098291.1|3529566_3530106_-	hypothetical protein	NA	A0A077KAW0	Edwardsiella_phage	61.4	6.6e-49
WP_094081542.1|3530090_3531319_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_000204761.1|3531394_3532078_-|terminase	PBSX family phage terminase large subunit	terminase	K4NXU1	Acinetobacter_phage	73.4	7.0e-96
WP_001108106.1|3532028_3532793_-	hypothetical protein	NA	G8C7P2	Escherichia_phage	55.4	7.0e-12
WP_011069285.1|3532987_3533500_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_128567431.1|3533632_3533824_-	hypothetical protein	NA	Q76H62	Enterobacteria_phage	98.4	1.3e-28
WP_000747032.1|3533906_3535074_+|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_000183927.1|3535594_3536755_-	methionine-oxo-acid transaminase	NA	NA	NA	NA	NA
WP_001120449.1|3536863_3537952_+	hydroxycarboxylate dehydrogenase HcxA	NA	NA	NA	NA	NA
WP_000460431.1|3537961_3538159_-	YbdD/YjiX family protein	NA	NA	NA	NA	NA
WP_001043137.1|3538340_3540446_-	carbon starvation protein CstA	NA	NA	NA	NA	NA
WP_000637935.1|3540626_3541040_-	proofreading thioesterase EntH	NA	NA	NA	NA	NA
WP_000347671.1|3541042_3541789_-	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	NA	NA	NA	NA	NA
WP_001007138.1|3541788_3542646_-	enterobactin biosynthesis bifunctional isochorismatase/aryl carrier protein EntB	NA	NA	NA	NA	NA
WP_000026774.1|3542659_3544270_-	(2,3-dihydroxybenzoyl)adenylate synthase	NA	NA	NA	NA	NA
WP_001234333.1|3545746_3546703_+	Fe2+-enterobactin ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001041804.1|3546706_3547939_-	enterobactin transporter EntS	NA	NA	NA	NA	NA
WP_001298899.1|3548049_3549054_+	Fe(3+)-siderophore ABC transporter permease	NA	NA	NA	NA	NA
WP_000640962.1|3549050_3550043_+	iron-enterobactin ABC transporter permease	NA	NA	NA	NA	NA
WP_000140641.1|3550039_3550855_+	iron-enterobactin ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	22.0	7.3e-07
WP_000077740.1|3552976_3556822_-	enterobactin non-ribosomal peptide synthetase EntF	NA	A0A2K9KZV5	Tupanvirus	29.6	9.8e-62
WP_000885782.1|3556818_3557037_-	enterobactin biosynthesis protein YbdZ	NA	NA	NA	NA	NA
WP_000125827.1|3557039_3558242_-	enterochelin esterase	NA	NA	NA	NA	NA
WP_001034886.1|3558484_3560725_+	siderophore enterobactin receptor FepA	NA	NA	NA	NA	NA
WP_001506608.1|3560899_3561520_+	enterobactin synthase subunit EntD	NA	NA	NA	NA	NA
WP_000956465.1|3561641_3561794_-	type I toxin-antitoxin system toxin HokE	NA	NA	NA	NA	NA
WP_000956463.1|3562144_3562297_-	type I toxin-antitoxin system toxin HokE	NA	NA	NA	NA	NA
WP_073828204.1|3566770_3567889_+	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_000682518.1|3567954_3568203_+	DUF1158 domain-containing protein	NA	NA	NA	NA	NA
WP_000360957.1|3568267_3568636_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000351490.1|3568729_3569383_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_001153148.1|3569490_3570738_+	mechanosensitive ion channel YbdG	NA	NA	NA	NA	NA
WP_000786330.1|3570805_3572182_-	phenylalanine transporter	NA	NA	NA	NA	NA
WP_000573972.1|3572282_3575426_-	Cu(+)/Ag(+) efflux RND transporter permease subunit CusA	NA	S5VTK5	Leptospira_phage	22.5	3.7e-59
WP_094081528.1|3576198_3577471_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	3.0e-177
>prophage 20
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	3686586	3816061	4723195	transposase,tail,tRNA,integrase	Shigella_phage(27.5%)	108	3746479:3746537	3756953:3757011
WP_001058445.1|3686586_3686721_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_000179819.1|3690035_3690650_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_000019869.1|3690649_3690979_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_000971346.1|3690990_3691881_+	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
WP_005053053.1|3692064_3692376_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_005060796.1|3692510_3692909_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005060811.1|3693804_3695958_+	SEL1-like repeat protein	NA	NA	NA	NA	NA
WP_000645013.1|3696010_3697741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001138904.1|3697800_3698292_-	nucleotide binding protein YajQ	NA	NA	NA	NA	NA
WP_000705865.1|3698459_3699371_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_001276336.1|3699333_3699924_+	protein deglycase YajL	NA	NA	NA	NA	NA
WP_112324859.1|3699977_3701426_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_001124935.1|3701631_3701874_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000347234.1|3701873_3702773_+	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
WP_000006825.1|3702797_3704660_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_001199828.1|3704714_3705632_+	1-deoxyxylulose-5-phosphate synthase YajO	NA	NA	NA	NA	NA
WP_000154147.1|3705742_3706261_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
WP_000742108.1|3706238_3707216_-	thiamine-phosphate kinase	NA	NA	NA	NA	NA
WP_000801125.1|3707293_3707713_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_001021161.1|3707732_3708203_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	47.4	1.3e-29
WP_001150448.1|3708291_3709395_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.5	9.1e-53
WP_000543539.1|3709398_3709848_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001382892.1|3709998_3710538_+	DUF3251 domain-containing protein	NA	NA	NA	NA	NA
WP_001295328.1|3710835_3711720_+	nucleoside-specific channel-forming protein Tsx	NA	NA	NA	NA	NA
WP_000974813.1|3711896_3712244_-	HNH nuclease family protein	NA	NA	NA	NA	NA
WP_000046642.1|3712372_3713344_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.9	8.0e-45
WP_000934822.1|3713354_3715202_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_000007629.1|3715229_3715562_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	2.8e-10
WP_000667315.1|3715584_3716712_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.3	1.6e-89
WP_001266503.1|3716766_3717837_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_000979361.1|3718507_3720325_-	maltodextrin glucosidase	NA	NA	NA	NA	NA
WP_000444173.1|3720480_3721854_-	proline-specific permease ProY	NA	NA	NA	NA	NA
WP_000149647.1|3721929_3723249_-	branched-chain amino acid transporter carrier protein BrnQ	NA	NA	NA	NA	NA
WP_000893611.1|3723655_3724951_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	30.8	1.7e-26
WP_000113938.1|3725008_3725698_-	phosphate response regulator transcription factor PhoB	NA	W8CYM9	Bacillus_phage	38.5	1.5e-37
WP_001221306.1|3725887_3727090_+	exonuclease subunit SbcD	NA	R4JGS2	Bacillus_phage	31.5	2.4e-06
WP_000698943.1|3727086_3730230_+	exonuclease subunit SbcC	NA	G3MAB6	Bacillus_virus	26.9	5.8e-12
WP_005053102.1|3730355_3731537_+	MFS transporter AraJ	NA	NA	NA	NA	NA
WP_001219335.1|3731679_3732588_-	fructokinase	NA	NA	NA	NA	NA
WP_005053105.1|3732712_3733624_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	63.3	4.6e-103
WP_000194195.1|3733701_3734157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000941942.1|3734643_3734928_-	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001276420.1|3734999_3735677_-	AroM family protein	NA	NA	NA	NA	NA
WP_001142439.1|3735934_3736126_-	protein YaiA	NA	NA	NA	NA	NA
WP_000193385.1|3736175_3736700_-	shikimate kinase AroL	NA	NA	NA	NA	NA
WP_112324860.1|3736882_3737341_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_001295331.1|3737460_3738270_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_005053118.1|3738286_3739402_-	diguanylate cyclase AdrA	NA	A0A127AWB9	Bacillus_phage	34.5	1.5e-18
WP_001189111.1|3740960_3742469_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_094092420.1|3743015_3744213_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	5.4e-67
WP_005060548.1|3744340_3744964_+	hypothetical protein	NA	A0A088CQ58	Enterobacteria_phage	76.3	2.9e-72
WP_000551008.1|3745017_3746190_-	acyltransferase	NA	A0A088CPR9	Enterobacteria_phage	99.5	1.1e-210
3746479:3746537	attL	ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAA	NA	NA	NA	NA
WP_038404316.1|3746538_3747702_-|integrase	site-specific integrase	integrase	U5P434	Shigella_phage	99.5	5.9e-228
WP_154074691.1|3747887_3749043_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	6.8e-67
WP_000554647.1|3749096_3749747_+	hypothetical protein	NA	S5FKM2	Shigella_phage	100.0	1.2e-116
WP_001223322.1|3749718_3750153_+|tail	tail fiber assembly protein	tail	S5FXM8	Shigella_phage	100.0	1.9e-78
WP_073828213.1|3750925_3751975_-	acyltransferase family protein	NA	S5FNR8	Shigella_phage	99.1	1.2e-195
WP_001111520.1|3752425_3753616_+|transposase	IS4-like element ISSfl9 family transposase	transposase	S5FM71	Shigella_phage	99.5	3.7e-225
WP_000590789.1|3754005_3755466_-	glucosyltransferase GtrII	NA	O21944	Shigella_phage	99.4	6.6e-269
WP_000703655.1|3755462_3756392_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	99.7	2.3e-174
WP_000915845.1|3756388_3756751_-	GtrA family protein	NA	U5P0S6	Shigella_phage	99.2	2.3e-58
WP_001340280.1|3758348_3759026_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
3756953:3757011	attR	ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAA	NA	NA	NA	NA
WP_000624622.1|3759025_3759373_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_000381321.1|3759392_3760964_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_001189111.1|3762848_3764357_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_000563002.1|3764903_3765263_+	hypothetical protein	NA	U5P092	Shigella_phage	99.0	1.7e-53
WP_000206732.1|3765262_3765568_+	hypothetical protein	NA	U5P0J0	Shigella_phage	100.0	6.8e-51
WP_094081493.1|3766576_3767732_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_000893267.1|3768428_3769682_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	5.8e-96
WP_001285281.1|3769693_3770797_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.1	4.1e-61
WP_000749864.1|3771860_3772916_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.9	3.5e-118
WP_000174678.1|3772954_3773356_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_000189558.1|3773413_3774658_-	esterase FrsA	NA	NA	NA	NA	NA
WP_001291990.1|3774749_3775208_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001293030.1|3775469_3776927_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_005053205.1|3777659_3778703_-	RNA ligase RtcB family protein	NA	A0A059VHB8	Mycobacterium_phage	30.0	6.8e-26
WP_001059860.1|3778948_3779401_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001263491.1|3779410_3779809_-	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA	NA
WP_000554759.1|3779811_3780105_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA	NA
WP_001226172.1|3780156_3781212_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000207560.1|3781282_3782068_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
WP_005082921.1|3782012_3783752_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
WP_000006251.1|3783968_3784466_-|transposase	REP-associated tyrosine transposase RayT	transposase	NA	NA	NA	NA
WP_001225676.1|3785546_3786287_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000333379.1|3786257_3787025_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000284050.1|3787230_3787809_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
WP_000973114.1|3788048_3790493_+	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA	NA
WP_000532697.1|3790535_3791009_-	C-lysozyme inhibitor	NA	NA	NA	NA	NA
WP_001139559.1|3791162_3791933_+	2-oxoglutaramate amidase	NA	NA	NA	NA	NA
WP_000343515.1|3792340_3792661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128567422.1|3792678_3792882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005053234.1|3792981_3793971_-	RHS repeat-associated core domain-containing protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	52.7	6.5e-26
WP_000568701.1|3793967_3796256_-	RHS repeat protein	NA	NA	NA	NA	NA
WP_005053237.1|3796252_3796660_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_000011500.1|3797149_3799363_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
WP_000667623.1|3799387_3799774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001102097.1|3801556_3802276_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_000023933.1|3802286_3803714_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_000370403.1|3803706_3804402_+	lactate utilization protein C	NA	NA	NA	NA	NA
WP_112324898.1|3804673_3805312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077696319.1|3806220_3806415_+	regulator	NA	NA	NA	NA	NA
WP_045177322.1|3806681_3807608_+	taurine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000939367.1|3807620_3808388_+	taurine ABC transporter ATP-binding subunit	NA	G9BWD6	Planktothrix_phage	39.8	4.3e-25
WP_000114607.1|3808384_3809212_+	taurine ABC transporter permease TauC	NA	NA	NA	NA	NA
WP_000004031.1|3809208_3810060_+	taurine dioxygenase	NA	NA	NA	NA	NA
WP_001295337.1|3810165_3811140_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_094081542.1|3812900_3814128_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_094081495.1|3814905_3816061_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
>prophage 21
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	3828029	3891552	4723195	tRNA,transposase,coat,plate,protease,portal,terminase	Escherichia_phage(27.27%)	56	NA	NA
WP_005053293.1|3828029_3829760_-	lytic transglycosylase domain-containing protein	NA	A0A088CQ71	Enterobacteria_phage	97.9	6.8e-281
WP_000246949.1|3829760_3831092_-	phage DNA ejection protein	NA	A0A2D1GLX5	Escherichia_phage	99.8	3.1e-217
WP_000964877.1|3831101_3831794_-	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	99.6	2.1e-111
WP_000627639.1|3831796_3832252_-	DUF2824 family protein	NA	A0A2D1GLX4	Escherichia_phage	99.3	8.8e-87
WP_000785540.1|3832251_3833100_-	Packaged DNA stabilization protein gp26	NA	Q716G6	Shigella_phage	98.6	2.1e-102
WP_001122382.1|3833099_3834518_-	packaged DNA stabilization protein gp10	NA	Q9AYZ4	Salmonella_phage	98.7	1.2e-272
WP_001054834.1|3834517_3835018_-	DNA recombination protein RmuC	NA	G8EYJ2	Enterobacteria_phage	99.4	6.5e-91
WP_005053303.1|3834995_3835226_-	hypothetical protein	NA	A0A2D1GLK1	Escherichia_phage	69.3	1.2e-23
WP_001196950.1|3835270_3836566_-|coat	coat protein	coat	A0A2D1GLV2	Escherichia_phage	98.4	1.5e-240
WP_000373012.1|3836565_3837477_-	scaffold protein	NA	A0A2D1GLN7	Escherichia_phage	99.0	2.0e-159
WP_073828195.1|3837490_3839656_-|portal	portal protein	portal	A0A2D1GLJ6	Escherichia_phage	99.0	0.0e+00
WP_014532150.1|3839656_3840712_-|terminase	terminase	terminase	I1TEI5	Salmonella_phage	99.7	1.2e-211
WP_000747032.1|3840705_3841874_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	100.0	1.8e-184
WP_000343116.1|3841951_3842239_+	hypothetical protein	NA	A0A1P8DTP0	Salmonella_phage	60.0	1.8e-29
WP_094081528.1|3842295_3843569_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	3.0e-177
WP_000183806.1|3844522_3845155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109273791.1|3845155_3845353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001276640.1|3845349_3845844_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000371478.1|3845859_3847743_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000402248.1|3848312_3849359_+	ImpA family type VI secretion system protein	NA	NA	NA	NA	NA
WP_001366128.1|3849698_3850430_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	38.6	7.6e-40
WP_000917883.1|3850494_3850962_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.7	1.0e-50
WP_005060310.1|3850958_3851681_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052754.1|3851714_3852470_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644679.1|3852541_3853888_+	murein transglycosylase D	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	35.1	3.7e-08
WP_000211683.1|3853935_3854706_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001230983.1|3854783_3855584_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_000648578.1|3855824_3856739_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000483773.1|3856788_3858135_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000997046.1|3858173_3858977_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	36.2	9.2e-39
WP_001140187.1|3864736_3865312_-	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_000593997.1|3865499_3866531_+	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.2	7.2e-36
WP_001294596.1|3866523_3867177_+	methionine ABC transporter permease MetI	NA	NA	NA	NA	NA
WP_000874224.1|3867216_3868032_+	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA	NA
WP_001202325.1|3868149_3868554_+	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
WP_000094030.1|3868550_3869258_+|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_001260712.1|3869368_3871087_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005053355.1|3871139_3871964_+	YaeF family permuted papain-like enzyme	NA	NA	NA	NA	NA
WP_000239155.1|3872118_3872829_-	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA	NA
WP_000635538.1|3872842_3873265_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_001185290.1|3873261_3873807_-	YaeQ family protein	NA	NA	NA	NA	NA
WP_000417058.1|3873972_3874173_+	YaeP family protein	NA	NA	NA	NA	NA
WP_000062312.1|3874159_3874420_+	Rho-binding antiterminator	NA	NA	NA	NA	NA
WP_000176576.1|3874468_3875767_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_000901098.1|3875831_3876221_-	VOC family protein	NA	NA	NA	NA	NA
WP_112324848.1|3876277_3878419_-	lysine decarboxylase LdcC	NA	NA	NA	NA	NA
WP_000055741.1|3878517_3879477_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_001294740.1|3879489_3882972_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	2.2e-209
WP_000569431.1|3883008_3883605_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	40.0	1.8e-26
WP_000132065.1|3883601_3884750_-	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_000565966.1|3884749_3885538_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_000210739.1|3885541_3885997_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_001139282.1|3886101_3887127_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_000758956.1|3887130_3887616_-	molecular chaperone Skp	NA	NA	NA	NA	NA
WP_001240896.1|3887737_3890170_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_005053372.1|3890199_3891552_-|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
>prophage 22
NZ_CP045941	Shigella flexneri 2a strain AUSMDU00010535 chromosome, complete genome	4723195	4645643	4705727	4723195	transposase,tRNA,integrase	Stx2-converting_phage(40.0%)	36	4643189:4643203	4665510:4665524
4643189:4643203	attL	TCAGTATCATGCCCA	NA	NA	NA	NA
WP_001070177.1|4645643_4646333_+|tRNA	tRNA (guanosine(18)-2'-O)-methyltransferase TrmH	tRNA	NA	NA	NA	NA
WP_000678442.1|4646338_4648420_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_000468833.1|4648453_4649659_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_001295238.1|4649938_4651330_+	xanthine/proton symporter XanP	NA	H9YQ34	environmental_Halophage	100.0	1.4e-71
WP_005052151.1|4651450_4653160_+	AsmA family protein	NA	NA	NA	NA	NA
WP_000702915.1|4653212_4655531_-	alpha-xylosidase	NA	NA	NA	NA	NA
WP_001088899.1|4657582_4658794_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	69.3	4.2e-160
WP_000999840.1|4659205_4660249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094081542.1|4665351_4666580_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
4665510:4665524	attR	TGGGCATGATACTGA	NA	NA	NA	NA
WP_001299815.1|4666715_4666895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001004881.1|4666946_4667141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071600834.1|4670169_4670367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000074477.1|4670316_4671510_-	MFS transporter	NA	NA	NA	NA	NA
WP_001403387.1|4671645_4673370_+	aerobactin synthase IucA	NA	NA	NA	NA	NA
WP_001287501.1|4673370_4674318_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA	NA
WP_001015713.1|4674317_4676060_+	aerobactin synthase IucC	NA	NA	NA	NA	NA
WP_000750135.1|4676056_4677394_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA	NA
WP_011069568.1|4677399_4679595_+	ferric aerobactin receptor IutA	NA	NA	NA	NA	NA
WP_000381321.1|4680052_4681624_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_000624622.1|4681643_4681991_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_001340280.1|4681990_4682668_-|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_001421454.1|4682852_4682996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094081542.1|4683951_4685180_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_000989229.1|4685325_4687848_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_000867146.1|4689956_4690997_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	38.3	2.7e-51
WP_000741620.1|4691083_4692043_+	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
WP_001251991.1|4692042_4692933_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_112324882.1|4693024_4693798_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	31.6	1.3e-18
WP_000377786.1|4693812_4694538_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_001057132.1|4694823_4695645_+	transcriptional antiterminator BglG	NA	NA	NA	NA	NA
WP_000137307.1|4695778_4697656_+	PTS beta-glucoside transporter subunit IIABC	NA	NA	NA	NA	NA
WP_000489690.1|4699930_4701547_+	carbohydrate-specific porin BglH	NA	NA	NA	NA	NA
WP_005052068.1|4701573_4702749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000766898.1|4702750_4703473_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_045178171.1|4703534_4704071_-	CbrC family protein	NA	NA	NA	NA	NA
WP_005063916.1|4704125_4705727_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.6	1.2e-146
>prophage 1
NZ_CP045942	Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_01, complete sequence	234182	1979	176746	234182	protease,transposase	Escherichia_phage(26.92%)	112	NA	NA
WP_128604311.1|1979_3176_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000957853.1|3185_3374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000597731.1|3704_5432_-	T3SS effector E3 ubiquitin-protein ligase IpaH1.4	NA	NA	NA	NA	NA
WP_000957712.1|5822_6089_-	type 3 secretion system effector OspE2	NA	NA	NA	NA	NA
WP_011114782.1|6736_6889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094081528.1|8933_10206_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	3.0e-177
WP_011378983.1|11616_11754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005061047.1|12715_13663_+|protease	omptin family outer membrane protease IcsP	protease	NA	NA	NA	NA
WP_001046939.1|15209_16076_+	type 3 secretion system effector OspB	NA	A0A0P0ZCT1	Stx2-converting_phage	32.7	9.4e-29
WP_000850662.1|16404_17145_+	PAP2 family phosphatase PhoN2	NA	A0A1B1IUP6	uncultured_Mediterranean_phage	28.4	7.5e-11
WP_000261567.1|19779_20130_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.0	2.8e-08
WP_005061014.1|21470_23180_-	ShET2/EspL2 family type III secretion system effector toxin	NA	NA	NA	NA	NA
WP_001121867.1|23611_24331_-	type III secretion system effector phosphothreonine lyase	NA	NA	NA	NA	NA
WP_000868563.1|25362_25941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000338649.1|27262_27448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005104824.1|27905_29252_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_000622998.1|29695_30043_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	74.8	9.8e-46
WP_000026470.1|32930_33608_+	type 3 secretion system effector OspD1	NA	NA	NA	NA	NA
WP_011114726.1|34119_34434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901798.1|34715_35282_+	type III secretion effector IpgB2	NA	NA	NA	NA	NA
WP_005064872.1|37852_39046_-|transposase	IS4-like element ISSfl1 family transposase	transposase	S5FM71	Shigella_phage	62.5	2.0e-138
WP_075335727.1|39478_40261_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.2	3.8e-138
WP_000200287.1|40987_42187_+	AAA family ATPase	NA	Q71TL9	Escherichia_phage	75.1	2.0e-175
WP_000431558.1|42186_43167_+	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	58.2	5.0e-95
WP_072075197.1|44196_45375_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	32.4	2.6e-29
WP_000957853.1|47793_47982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039057289.1|47991_49191_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_171769592.1|50116_50539_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	97.2	1.7e-52
WP_005116773.1|50480_51269_-	AraC family invasion system transcriptional regulator VirF	NA	NA	NA	NA	NA
WP_000957712.1|52280_52547_+	type 3 secretion system effector OspE2	NA	NA	NA	NA	NA
WP_005085088.1|53694_54891_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_154074696.1|55226_56918_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_001189111.1|58377_59886_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_000405245.1|61081_61564_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010921625.1|61554_61857_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_000019158.1|62128_62401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000198552.1|62381_63590_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000701108.1|64038_65493_-	type 3 secretion system effector OspC2	NA	NA	NA	NA	NA
WP_001034121.1|69043_73138_-|protease	serine protease autotransporter toxin SepA	protease	Q9LA58	Enterobacterial_phage	42.3	7.3e-281
WP_000957853.1|73539_73728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039057289.1|73737_74937_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_011114740.1|76072_77104_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_010921637.1|78512_80210_+	T3SS effector E3 ubiquitin-protein ligase IpaH7.8	NA	NA	NA	NA	NA
WP_010921638.1|80637_82362_+	T3SS effector E3 ubiquitin-protein ligase IpaH4.5	NA	NA	NA	NA	NA
WP_001189111.1|83821_85330_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_000051931.1|86895_88260_+	MFS transporter	NA	NA	NA	NA	NA
WP_072056208.1|90868_91567_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.1	7.3e-125
WP_000198552.1|91942_93151_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000019158.1|93131_93404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154074697.1|93806_95504_-	type III secretion system effector OspD3	NA	NA	NA	NA	NA
WP_001026857.1|95832_97245_-	type 3 secretion system effector OspC1	NA	NA	NA	NA	NA
WP_094085526.1|98584_99450_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	47.7	6.7e-19
WP_005038443.1|99538_100012_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005085088.1|100262_101459_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000502854.1|102105_102744_-	ParB N-terminal domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	50.0	1.2e-52
WP_094081542.1|102909_104138_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.0	2.9e-177
WP_094081550.1|104252_105409_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_000501974.1|105929_106415_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011114751.1|106402_106687_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_001346193.1|107588_107753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005063916.1|108006_109608_-|transposase	IS66-like element ISSfl3 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	61.6	1.2e-146
WP_005048975.1|109604_109955_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	68.7	3.5e-27
WP_004967157.1|109951_110626_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	30.8	2.0e-10
WP_154074698.1|111198_112653_+	T3SS effector OspC family protein	NA	NA	NA	NA	NA
WP_005119583.1|116224_117421_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_039071683.1|117612_118617_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	97.5	2.2e-183
WP_005059304.1|119969_120749_+|protease	type III secretion system effector cysteine protease IpaJ	protease	NA	NA	NA	NA
WP_000227976.1|121691_122621_-	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	42.6	1.4e-51
WP_000588813.1|122837_123074_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_005083511.1|123077_124979_-	T3SS effector invasin IpaA	NA	NA	NA	NA	NA
WP_001028032.1|124987_125986_-	type III secretion system needle tip complex protein IpaD	NA	NA	NA	NA	NA
WP_000405471.1|126036_127128_-	T3SS translocon subunit IpaC	NA	NA	NA	NA	NA
WP_000552054.1|127147_128890_-	type III secretion system translocon subunit IpaB	NA	NA	NA	NA	NA
WP_000055835.1|128895_129363_-	SycD/LcrH family type III secretion system chaperone IpgC	NA	NA	NA	NA	NA
WP_001166521.1|129419_130046_-	type III secretion effector IpgB1	NA	NA	NA	NA	NA
WP_010921664.1|130061_130451_-	type III secretion system chaperone IpgA	NA	NA	NA	NA	NA
WP_000601043.1|130463_131948_-	type III secretion system effector IcsB	NA	NA	NA	NA	NA
WP_073828080.1|132261_133878_+	type III secretion system effector inositol phosphate phosphatase	NA	NA	NA	NA	NA
WP_000389732.1|133887_134250_+	type III secretion system chaperone IpgE	NA	NA	NA	NA	NA
WP_000086109.1|134249_134708_+	type III secretion system lytic transglycosylase IpgF	NA	NA	NA	NA	NA
WP_001287353.1|134716_135832_+	type III secretion system protein MxiG	NA	NA	NA	NA	NA
WP_010921669.1|135839_136091_+	type III secretion system needle filament protein MxiH	NA	NA	NA	NA	NA
WP_001106823.1|136103_136397_+	type III secretion system inner rod protein MxiI	NA	NA	NA	NA	NA
WP_000621942.1|136402_137128_+	SctJ family type III secretion inner membrane ring lipoprotein Mxi	NA	NA	NA	NA	NA
WP_000620627.1|137124_137652_+	type III secretion apparatus protein OrgA/MxiK	NA	NA	NA	NA	NA
WP_010921671.1|137593_138289_+	Mxi-Spa type III secretion system linker protein MxiN	NA	NA	NA	NA	NA
WP_000609865.1|138281_138689_+	Mxi-Spa secretion machinery protein MxiL	NA	NA	NA	NA	NA
WP_001346200.1|138672_139101_+	type III secretion system transcriptional activator MxiE	NA	NA	NA	NA	NA
WP_000398259.1|139230_139863_+	type III secretion system transcriptional activator MxiE	NA	NA	NA	NA	NA
WP_000714357.1|139849_141550_+	type III secretion system secretin MxiD	NA	NA	NA	NA	NA
WP_000887826.1|141568_142636_+	type III secretion system gatekeeper subunit MxiC	NA	NA	NA	NA	NA
WP_000616104.1|142648_144709_+	type III secretion system export apparatus protein MxiA	NA	NA	NA	NA	NA
WP_000065502.1|144721_145123_+	type III secretion system chaperone Spa15/SpaK	NA	NA	NA	NA	NA
WP_000122616.1|145126_146419_+	type III secretion system ATPase SpaL	NA	NA	NA	NA	NA
WP_000387670.1|146511_146850_+	type III secretion system protein Spa13	NA	NA	NA	NA	NA
WP_001162455.1|146836_147715_+	type III secretion system needle length regulator Spa32	NA	NA	NA	NA	NA
WP_000944310.1|147708_148590_+	SctQ family type III secretion system ring protein Spa33	NA	NA	NA	NA	NA
WP_000947539.1|148594_149245_+	type III secretion system export apparatus protein Spa24/SpaP	NA	NA	NA	NA	NA
WP_001280545.1|149259_149520_+	type III secretion system export apparatus protein SpaQ	NA	NA	NA	NA	NA
WP_000355395.1|149519_150290_+	type III secretion system export apparatus protein Spa29/SpaR	NA	NA	NA	NA	NA
WP_001284686.1|150296_151325_+	type III secretion system export apparatus switch protein Spa40/SpaS	NA	NA	NA	NA	NA
WP_010921676.1|151337_151580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000957853.1|153684_153873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039057289.1|153882_155082_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_011114759.1|155819_156224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011114760.1|156775_157492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000124082.1|161059_161425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001195004.1|163808_165011_-|protease	alpha-tubulin-specific protease	protease	NA	NA	NA	NA
WP_001071795.1|165539_168848_+	outer membrane autotransporter IcsA	NA	A0A2L1IV18	Escherichia_phage	28.7	1.5e-74
WP_000612525.1|171032_172685_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000828661.1|174982_175732_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_094081568.1|175901_176746_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.1	2.2e-22
>prophage 2
NZ_CP045942	Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_01, complete sequence	234182	223538	232503	234182	transposase	Stx2-converting_phage(42.86%)	10	NA	NA
WP_000205722.1|223538_224285_+	conjugal transfer pilus acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	32.0	5.4e-09
WP_000139368.1|224339_224900_+	fertility inhibition protein FinO	NA	NA	NA	NA	NA
WP_004971339.1|225030_225243_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001340280.1|225427_226105_+|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	46.0	3.3e-21
WP_000624622.1|226104_226452_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	76.6	2.6e-46
WP_000381321.1|226471_228043_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.6e-167
WP_134797815.1|228476_229633_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	44.7	8.9e-67
WP_112324892.1|229967_230147_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_001016257.1|230200_230947_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	48.5	5.0e-55
WP_001298859.1|230961_232503_-|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
>prophage 1
NZ_CP045943	Shigella flexneri 2a strain AUSMDU00010535 plasmid pAUSMDU00010535_02, complete sequence	83548	1796	23796	83548	transposase,protease,integrase	Escherichia_phage(40.0%)	24	NA	NA
WP_000616807.1|1796_2450_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000557619.1|2542_2800_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA	NA
WP_001398199.1|2732_3134_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA	NA
WP_000656305.1|4982_5360_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001138064.1|5426_8393_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.6	0.0e+00
WP_001512989.1|8395_8848_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	3.2e-49
WP_001067855.1|8887_9592_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001387387.1|9638_10040_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000027057.1|10189_11050_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001067855.1|11348_12053_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000454193.1|12251_12602_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_000845048.1|12804_13818_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001389366.1|13975_14449_+	trimethoprim-resistant dihydrofolate reductase DfrA17	NA	A0A1B2IAU3	Erwinia_phage	34.6	1.3e-16
WP_000503573.1|14579_15368_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA	NA
WP_000679427.1|15573_15921_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_000259031.1|15914_16754_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_000376616.1|16881_17085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000184001.1|17240_18446_+	chromate efflux transporter	NA	NA	NA	NA	NA
WP_000130000.1|18456_18762_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001389365.1|18988_19753_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_001137892.1|20245_20830_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000004159.1|20829_22068_-	MFS transporter	NA	NA	NA	NA	NA
WP_000219391.1|22064_22970_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_001067855.1|23091_23796_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
