assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009664185.1_ASM966418v1	NZ_CP043486	Escherichia coli strain SL112 chromosome, complete genome	1	339253-339346	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CGATGTAACAACGCGCACAGATCAGTCCCC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|310aa|up_9|NZ_CP043486.1_332131_333061_-,NA|326aa|down_5|NZ_CP043486.1_344047_345025_+	NA|310aa|up_9|NZ_CP043486.1_332131_333061_-	NA	NA|143aa|up_8|NZ_CP043486.1_333187_333616_-	pfam05130, FlgN, FlgN protein	NA|93aa|up_7|NZ_CP043486.1_333628_333907_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|246aa|up_6|NZ_CP043486.1_333987_334725_-	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|112aa|up_5|NZ_CP043486.1_334806_335142_+	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|144aa|up_4|NZ_CP043486.1_335144_335576_+	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|238aa|up_3|NZ_CP043486.1_335575_336289_+	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|401aa|up_2|NZ_CP043486.1_336373_337576_+	PRK06803, flgE, flagellar basal body protein FlaE	NA|246aa|up_1|NZ_CP043486.1_337575_338313_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|up_0|NZ_CP043486.1_338391_339177_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|222aa|down_0|NZ_CP043486.1_339448_340114_+	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|367aa|down_1|NZ_CP043486.1_340128_341229_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|100aa|down_2|NZ_CP043486.1_341228_341528_+	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|459aa|down_3|NZ_CP043486.1_341710_343087_+	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|310aa|down_4|NZ_CP043486.1_343101_344031_+	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|326aa|down_5|NZ_CP043486.1_344047_345025_+	NA	NA|281aa|down_6|NZ_CP043486.1_345083_345926_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|403aa|down_7|NZ_CP043486.1_346083_347292_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|305aa|down_8|NZ_CP043486.1_347749_348664_+	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|439aa|down_9|NZ_CP043486.1_348870_350187_+	PRK08032, fliD, flagellar capping protein; Reviewed
GCF_009664185.1_ASM966418v1	NZ_CP043486	Escherichia coli strain SL112 chromosome, complete genome	2	2924083-2924965	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|254aa|up_9|NZ_CP043486.1_2915895_2916657_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP043486.1_2916637_2917687_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP043486.1_2917683_2918163_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP043486.1_2918162_2918873_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP043486.1_2918891_2919203_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP043486.1_2919396_2919720_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP043486.1_2919769_2920375_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP043486.1_2920374_2921802_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP043486.1_2921803_2922712_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP043486.1_2922963_2924001_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP043486.1_2925061_2925355_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP043486.1_2925354_2926275_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP043486.1_2926271_2926922_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP043486.1_2926903_2927650_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP043486.1_2927660_2928716_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP043486.1_2928727_2929267_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP043486.1_2929263_2930826_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP043486.1_2930923_2933623_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP043486.1_2933817_2933970_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP043486.1_2934234_2934969_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_009664185.1_ASM966418v1	NZ_CP043486	Escherichia coli strain SL112 chromosome, complete genome	3	2950669-2951308	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|47aa|down_1|NZ_CP043486.1_2952457_2952598_+	NA|424aa|up_9|NZ_CP043486.1_2939312_2940584_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP043486.1_2940574_2940835_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP043486.1_2940851_2941427_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP043486.1_2941574_2942468_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP043486.1_2942431_2943211_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP043486.1_2943188_2944598_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP043486.1_2944619_2946074_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP043486.1_2946143_2946929_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP043486.1_2947247_2948525_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP043486.1_2948551_2950030_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP043486.1_2951647_2952319_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP043486.1_2952457_2952598_+	NA	NA|291aa|down_2|NZ_CP043486.1_2952611_2953484_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP043486.1_2953543_2954842_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP043486.1_2954929_2956567_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP043486.1_2956794_2957586_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP043486.1_2957656_2957992_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP043486.1_2957991_2958240_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP043486.1_2958317_2960552_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP043486.1_2960599_2961901_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
