The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	419939	468630	2537329	portal,protease,capsid,integrase,plate,tail	Xylella_phage(23.81%)	55	450524:450538	475901:475915
WP_004089328.1|419939_421274_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_004089326.1|421300_422485_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_004089324.1|422487_423342_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011097592.1|423338_424106_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	34.8	9.5e-17
WP_004089320.1|424108_424666_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_004089318.1|425419_426763_-	outer membrane protein transport protein	NA	NA	NA	NA	NA
WP_004089316.1|426994_427675_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_004089314.1|427793_428114_+	DUF1820 family protein	NA	NA	NA	NA	NA
WP_011097594.1|428994_429219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004089310.1|429326_430058_-	UMP kinase	NA	NA	NA	NA	NA
WP_155115092.1|430368_430512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004089308.1|430532_430757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004089306.1|431459_432119_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_004089304.1|432231_434124_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
WP_011097597.1|434264_434984_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_004089300.1|434980_435994_-	glucokinase	NA	NA	NA	NA	NA
WP_004089298.1|435990_437424_-	glucose-6-phosphate dehydrogenase	NA	A0A222YYZ2	Synechococcus_phage	34.4	2.6e-68
WP_011097599.1|437752_438847_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	32.4	5.5e-26
WP_004089294.1|438991_439795_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_011097601.1|440109_440328_+	DUF1674 domain-containing protein	NA	NA	NA	NA	NA
WP_004089288.1|440385_440781_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
WP_004089286.1|440777_441161_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
WP_004089284.1|441168_442959_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_004089282.1|442979_443765_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_004089280.1|443885_444134_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA	NA
WP_011097604.1|444156_444537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004089276.1|444562_445804_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_004089270.1|445796_446519_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	37.2	7.3e-35
WP_038231910.1|446866_449344_+	DNA internalization-related competence protein ComEC/Rec2	NA	M1PSD2	Streptococcus_phage	34.3	1.4e-05
WP_004085189.1|449328_449991_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_004089267.1|449995_450433_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_004089264.1|450450_452199_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.4	3.9e-50
450524:450538	attL	TTGTTGCTGCATGTG	NA	NA	NA	NA
WP_004089261.1|452195_453215_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_011097609.1|454240_455212_-	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	47.5	3.1e-65
WP_011097610.1|455219_455777_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	54.4	1.1e-51
WP_011097611.1|455769_456663_-|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	46.4	1.9e-69
WP_004090694.1|456662_457001_-|plate	phage baseplate protein	plate	A0A088FV58	Escherichia_phage	61.3	5.4e-33
WP_004090695.1|457198_457480_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	46.2	2.5e-15
WP_004085172.1|457490_457766_+	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_004090696.1|457853_458156_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
WP_004090697.1|458158_458560_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
WP_011097612.1|458628_459216_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_011097613.1|459212_459755_-	hypothetical protein	NA	A0A1W6JT55	Escherichia_phage	41.6	2.9e-36
WP_011097614.1|459730_460252_-	hypothetical protein	NA	D5LGZ7	Escherichia_phage	34.3	3.7e-12
WP_011097935.1|460248_460572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097616.1|460571_460832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097617.1|460849_462724_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	47.5	1.9e-159
WP_011097618.1|462720_463353_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	51.1	1.6e-46
WP_080502611.1|463307_463868_+	hypothetical protein	NA	C8CLG0	Xylella_phage	91.7	1.5e-91
WP_011097620.1|463864_464143_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	98.9	1.0e-45
WP_011097621.1|464144_464453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097622.1|464537_465956_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	99.8	4.4e-278
WP_011097623.1|465952_466207_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	81.2	2.2e-31
WP_011097624.1|466196_467216_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	90.6	6.2e-173
WP_011097625.1|467988_468630_+	ParA family protein	NA	A0A142F1W4	Mycobacterium_phage	39.7	9.1e-13
475901:475915	attR	TTGTTGCTGCATGTG	NA	NA	NA	NA
>prophage 2
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	1129170	1143200	2537329		Stenotrophomonas_phage(50.0%)	22	NA	NA
WP_038232939.1|1129170_1130346_+	replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	45.8	8.7e-78
WP_011097842.1|1130390_1130702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232929.1|1130713_1130917_+	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	61.7	2.1e-16
WP_011097854.1|1130913_1131159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232932.1|1131217_1132744_+	hypothetical protein	NA	A0A1W6DXV5	Xanthomonas_phage	48.7	2.5e-45
WP_011097845.1|1132749_1133121_+	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	45.0	6.8e-21
WP_041581125.1|1133125_1134280_+	filamentous phage Cf1c related protein	NA	S0F3F8	Stenotrophomonas_phage	57.0	6.2e-113
WP_011097847.1|1134508_1134820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097848.1|1134879_1135227_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	46.9	2.6e-06
WP_140161488.1|1135276_1135675_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_052293241.1|1135723_1136170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232919.1|1136171_1136435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232921.1|1136421_1136604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041581123.1|1137198_1138374_+	replication initiation factor	NA	S0F3F7	Stenotrophomonas_phage	45.8	8.7e-78
WP_011097842.1|1138418_1138730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232929.1|1138741_1138945_+	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	61.7	2.1e-16
WP_011097854.1|1138941_1139187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038232932.1|1139245_1140772_+	hypothetical protein	NA	A0A1W6DXV5	Xanthomonas_phage	48.7	2.5e-45
WP_011097845.1|1140777_1141149_+	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	45.0	6.8e-21
WP_140189326.1|1141153_1142308_+	hypothetical protein	NA	S0F3F8	Stenotrophomonas_phage	56.5	2.0e-111
WP_012382578.1|1142537_1142777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042466432.1|1142849_1143200_-	hypothetical protein	NA	Q38057	Xanthomonas_phage	51.0	4.1e-07
>prophage 3
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	1152597	1189360	2537329	protease,head,transposase,tRNA,plate,tail	Haemophilus_phage(31.82%)	42	NA	NA
WP_004089732.1|1152597_1154367_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011097863.1|1154684_1156202_-	fumarate hydratase	NA	NA	NA	NA	NA
WP_004089729.1|1156442_1158044_-|protease	protease	protease	NA	NA	NA	NA
WP_011097864.1|1158158_1159766_-|protease	carboxyl-terminal processing protease	protease	A0A0R6PIZ1	Moraxella_phage	29.7	4.6e-05
WP_004089725.1|1159923_1160244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148206068.1|1161032_1164134_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_012382580.1|1164562_1164787_+|transposase	transposase	transposase	A0A077SL42	Escherichia_phage	61.9	3.0e-16
WP_004089718.1|1164828_1165185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089716.1|1165162_1165447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089715.1|1165489_1165744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089713.1|1165917_1166250_-	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	40.7	8.3e-18
WP_004089711.1|1166975_1167881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382581.1|1169454_1169652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097868.1|1170165_1171329_-|tail	tail fiber protein	tail	A4PE46	Ralstonia_virus	32.7	1.4e-08
WP_011097869.1|1171332_1171893_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
WP_011097984.1|1171889_1173035_-|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	49.2	2.1e-97
WP_004089386.1|1173184_1173493_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_011097871.1|1173501_1173741_-	antitoxin	NA	NA	NA	NA	NA
WP_012382582.1|1173878_1174232_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	51.3	2.5e-25
WP_012382583.1|1174228_1174870_-	hypothetical protein	NA	A0A2H4J8H6	uncultured_Caudovirales_phage	36.8	7.4e-31
WP_012382584.1|1174866_1175697_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.1	2.0e-76
WP_012382585.1|1175693_1176011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382586.1|1176010_1176781_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	36.7	1.5e-30
WP_004091353.1|1176838_1177165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004091355.1|1177161_1177443_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	51.4	8.8e-13
WP_011097989.1|1177501_1179391_-	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	27.7	7.5e-23
WP_162849007.1|1179347_1179512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382587.1|1179538_1179961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097876.1|1179957_1180395_-	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	61.7	4.0e-44
WP_012382588.1|1180404_1181901_-	DUF3383 domain-containing protein	NA	Q7Y5T5	Haemophilus_phage	47.8	1.2e-124
WP_012382589.1|1181901_1182378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090296.1|1182358_1182727_-	hypothetical protein	NA	Q776V7	Haemophilus_phage	39.3	7.5e-20
WP_012382590.1|1182713_1183193_-	hypothetical protein	NA	M4SN98	Psychrobacter_phage	28.0	1.3e-08
WP_004085010.1|1183189_1183561_-	DUF4054 domain-containing protein	NA	Q7Y5T9	Haemophilus_phage	38.3	5.2e-13
WP_012382591.1|1183563_1183863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382592.1|1183927_1184911_-	DUF2184 domain-containing protein	NA	A0A2R3UA82	Siphoviridae_environmental_samples	39.1	1.4e-49
WP_004090290.1|1184920_1185403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090289.1|1185412_1186621_-	DUF2213 domain-containing protein	NA	H9C194	Pectobacterium_phage	41.7	2.5e-40
WP_004090288.1|1186620_1187466_-|head	phage head morphogenesis protein	head	Q7Y5U5	Haemophilus_phage	34.2	1.7e-30
WP_011097884.1|1187534_1187873_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_004090283.1|1187869_1188151_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	45.2	6.8e-13
WP_011097885.1|1188199_1189360_-	DUF1073 domain-containing protein	NA	L7TRA1	Rhizobium_phage	39.2	1.7e-54
>prophage 4
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	1192591	1226879	2537329	integrase,terminase	Xylella_phage(30.43%)	42	1210161:1210178	1228274:1228291
WP_165804217.1|1192591_1203034_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	33.7	1.1e-43
WP_155115100.1|1203167_1203314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097889.1|1203429_1203672_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_011097890.1|1203727_1204960_-|integrase	tyrosine-type recombinase/integrase	integrase	T1S9J3	Salmonella_phage	38.9	1.9e-67
WP_012382594.1|1205101_1205377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090279.1|1205373_1206924_-|terminase	phage terminase large subunit	terminase	H9C0C7	Vibrio_phage	44.7	2.4e-112
WP_004090276.1|1206913_1207273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038233055.1|1207364_1207601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097892.1|1207578_1208040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097893.1|1208029_1208359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004089579.1|1208351_1208849_-	lysozyme	NA	A0A2P9FI97	Pseudomonas_phage	60.3	1.6e-28
WP_004089578.1|1209052_1209391_-	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	54.9	1.0e-07
WP_004089577.1|1209377_1209644_-	hypothetical protein	NA	K4NX81	Burkholderia_phage	40.7	1.8e-07
WP_011097895.1|1209832_1210531_-	hypothetical protein	NA	C8CLH7	Xylella_phage	80.0	2.0e-98
1210161:1210178	attL	GCTTTGAGCTTGTCCAGC	NA	NA	NA	NA
WP_004090687.1|1210659_1211070_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.9	8.4e-12
WP_011098061.1|1211117_1211807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382597.1|1211787_1212675_-	YdaU family protein	NA	A0A0P0I481	Acinetobacter_phage	44.0	2.0e-18
WP_011097897.1|1212671_1213460_-	hypothetical protein	NA	C8CLG1	Xylella_phage	84.1	3.7e-117
WP_004088094.1|1213456_1214089_-	phage antirepressor	NA	Q8HA44	Vibrio_phage	48.1	7.6e-20
WP_004088096.1|1214085_1214370_-	hypothetical protein	NA	C8CLH4	Xylella_phage	65.9	4.3e-23
WP_011097898.1|1214366_1214615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004088102.1|1214611_1214800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004088104.1|1214827_1215019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004088108.1|1215277_1215523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382600.1|1215607_1216282_+	helix-turn-helix transcriptional regulator	NA	A0A0M3LQ62	Mannheimia_phage	32.6	2.6e-18
WP_004088112.1|1216332_1216944_-	cell filamentation protein Fic	NA	NA	NA	NA	NA
WP_004088114.1|1216940_1217129_-	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_012382601.1|1217520_1218057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004088056.1|1218053_1218467_+	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_004088054.1|1218463_1218865_+	hypothetical protein	NA	C8CLG7	Xylella_phage	97.7	3.6e-68
WP_012382602.1|1218861_1219011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004088050.1|1219096_1219375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382603.1|1219397_1219589_+	hypothetical protein	NA	C8CLG6	Xylella_phage	75.0	1.2e-16
WP_004088346.1|1219609_1219954_+	hypothetical protein	NA	U5P4J6	Shigella_phage	46.5	6.1e-16
WP_004088345.1|1219993_1220815_+	DUF2303 family protein	NA	K7ZMK3	Xanthomonas_citri_phage	43.1	2.3e-53
WP_004088344.1|1220830_1221757_+	phage recombination protein Bet	NA	U6C6J0	Ralstonia_phage	48.1	5.1e-57
WP_004088343.1|1221753_1223406_+	hypothetical protein	NA	U6C712	Ralstonia_phage	39.3	7.4e-91
WP_011097903.1|1223434_1224199_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_004088341.1|1224459_1225080_+	phage antirepressor	NA	A4PE61	Ralstonia_virus	44.6	1.8e-18
WP_004088340.1|1225146_1225593_+	single-stranded DNA-binding protein	NA	L7TJL2	Pseudomonas_virus	52.3	7.2e-33
WP_011097904.1|1225611_1225860_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	91.5	3.5e-37
WP_011097905.1|1225859_1226879_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	97.3	4.7e-189
1228274:1228291	attR	GCTGGACAAGCTCAAAGC	NA	NA	NA	NA
>prophage 5
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	1285014	1340514	2537329	portal,capsid,integrase,terminase,plate,tail	Xylella_phage(44.44%)	72	1330479:1330494	1342361:1342376
WP_011097922.1|1285014_1286208_-|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	53.4	5.1e-118
WP_011097923.1|1286207_1286480_-	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	51.7	2.2e-08
WP_012382613.1|1286923_1287082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004087359.1|1287548_1288091_-	pilin	NA	NA	NA	NA	NA
WP_004087360.1|1288501_1288714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004087362.1|1289119_1289905_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_004087363.1|1289941_1292548_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.5	4.8e-28
WP_012382616.1|1292980_1293712_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_004087365.1|1293791_1294652_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_014607779.1|1294805_1295675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004084923.1|1296447_1296792_-	RidA family protein	NA	NA	NA	NA	NA
WP_004088648.1|1296994_1297327_-	DNA-binding transcriptional regulator	NA	A0A0P0IRJ4	Acinetobacter_phage	39.8	5.4e-17
WP_011097927.1|1297518_1298601_-	phage late control D family protein	NA	A0A088FRU7	Escherichia_phage	45.6	9.7e-92
WP_004088371.1|1298591_1298810_-|tail	tail protein	tail	A0A1W6JT40	Escherichia_phage	51.4	2.1e-14
WP_011097928.1|1298806_1299289_-|tail	phage tail protein	tail	A0A193GYE0	Enterobacter_phage	46.8	2.6e-28
WP_011097929.1|1299285_1301505_-|tail	phage tail tape measure protein	tail	V5YUN9	Pseudomonas_phage	44.1	2.8e-93
WP_011097930.1|1301631_1301919_-|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	44.6	3.1e-13
WP_004086986.1|1301921_1302431_-|tail	phage major tail tube protein	tail	A0A088FRU2	Escherichia_phage	52.7	5.3e-48
WP_011097931.1|1302430_1303609_-|tail	phage tail sheath family protein	tail	A0A088FVH5	Escherichia_phage	56.1	8.3e-137
WP_012382617.1|1303673_1305266_-	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	36.1	7.1e-83
WP_011097610.1|1305273_1305831_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	54.4	1.1e-51
WP_011097611.1|1305823_1306717_-|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	46.4	1.9e-69
WP_004090694.1|1306716_1307055_-|plate	phage baseplate protein	plate	A0A088FV58	Escherichia_phage	61.3	5.4e-33
WP_004090907.1|1307204_1307468_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_004090909.1|1307454_1307736_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_011097612.1|1307772_1308360_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_011097613.1|1308356_1308899_-	hypothetical protein	NA	A0A1W6JT55	Escherichia_phage	41.6	2.9e-36
WP_011097614.1|1308874_1309396_-	hypothetical protein	NA	D5LGZ7	Escherichia_phage	34.3	3.7e-12
WP_012382618.1|1309392_1309716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382619.1|1309715_1309976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382620.1|1309993_1311868_-|capsid	phage major capsid protein	capsid	V5YSS9	Pseudomonas_phage	47.6	6.5e-160
WP_012382621.1|1311864_1313451_-|portal	phage portal protein	portal	A0A088FVG5	Escherichia_phage	50.9	7.0e-131
WP_004088901.1|1313447_1313999_-	hypothetical protein	NA	V5YTG8	Pseudomonas_phage	52.3	1.2e-40
WP_004088899.1|1314002_1315955_-|terminase	phage terminase large subunit family protein	terminase	A0A088FQV3	Escherichia_phage	63.3	9.2e-250
WP_004088896.1|1315947_1316481_-	DNA-packaging protein	NA	A0A193GYK5	Enterobacter_phage	58.6	5.2e-46
WP_012382622.1|1316653_1316878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097939.1|1316879_1317341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097940.1|1317330_1317642_-	hypothetical protein	NA	A0A172PZR6	Pseudomonas_phage	44.0	7.0e-19
WP_011097941.1|1317652_1318147_-	lysozyme	NA	A0A2I7RLY1	Vibrio_phage	50.3	1.7e-27
WP_011097942.1|1318113_1318731_-	hypothetical protein	NA	V5YTF6	Pseudomonas_phage	52.2	4.0e-26
WP_012382624.1|1319149_1321681_-	primase	NA	C8CLH6	Xylella_phage	75.1	0.0e+00
WP_011097944.1|1321816_1322383_-	hypothetical protein	NA	C8CLH5	Xylella_phage	93.6	1.7e-95
WP_011097945.1|1322379_1322766_-	phage antirepressor	NA	C8CLH4	Xylella_phage	88.2	1.9e-58
WP_011097946.1|1322762_1323149_-	hypothetical protein	NA	C8CLH4	Xylella_phage	73.1	6.2e-41
WP_012382625.1|1323528_1323915_-	phage antirepressor	NA	C8CLH4	Xylella_phage	76.4	4.6e-44
WP_080729500.1|1323911_1324169_-	hypothetical protein	NA	C8CLH4	Xylella_phage	86.9	2.8e-37
WP_012382627.1|1324399_1324645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097950.1|1324705_1324954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382629.1|1324950_1325139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382630.1|1325192_1325759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382631.1|1325748_1326009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097952.1|1326094_1326853_+	helix-turn-helix transcriptional regulator	NA	C8CLH0	Xylella_phage	40.0	2.2e-34
WP_011097953.1|1327013_1327553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382632.1|1327575_1327785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382633.1|1327838_1328222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097955.1|1328439_1328829_+	hypothetical protein	NA	C8CLG9	Xylella_phage	40.2	1.4e-08
WP_011097956.1|1328825_1329290_+	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_004088357.1|1329346_1329829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382634.1|1330128_1330320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382635.1|1330343_1330535_+	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	8.1e-18
1330479:1330494	attL	CGCCGCGCGCACTACG	NA	NA	NA	NA
WP_004090711.1|1330566_1330764_+	hypothetical protein	NA	C8CLG5	Xylella_phage	92.2	7.0e-25
WP_012382636.1|1330750_1331248_+	hypothetical protein	NA	C8CLG4	Xylella_phage	87.2	3.0e-48
WP_012382637.1|1331244_1332522_+	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	94.6	6.7e-233
WP_004090881.1|1332521_1333088_+	DUF2815 family protein	NA	C8CLG2	Xylella_phage	97.3	8.3e-103
WP_012382638.1|1333078_1334686_+	hypothetical protein	NA	C8CLG1	Xylella_phage	71.0	1.2e-186
WP_011097961.1|1334687_1336868_+	DNA polymerase	NA	C8CLG0	Xylella_phage	99.9	0.0e+00
WP_011097962.1|1336864_1337143_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	100.0	1.6e-46
WP_012382639.1|1337144_1337591_-	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_011097964.1|1337675_1339094_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	98.7	1.3e-274
WP_012382640.1|1339090_1339255_+	hypothetical protein	NA	C8CLF6	Xylella_phage	88.9	1.1e-18
WP_011097965.1|1339247_1339505_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	87.1	4.7e-37
WP_011097966.1|1339494_1340514_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	90.3	1.8e-172
1342361:1342376	attR	CGCCGCGCGCACTACG	NA	NA	NA	NA
>prophage 6
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	1382782	1406283	2537329	plate,tail,integrase	Xylella_phage(28.57%)	28	1383254:1383268	1403210:1403224
WP_004087352.1|1382782_1383658_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.5	1.1e-08
1383254:1383268	attL	CTGGACGAACCAACC	NA	NA	NA	NA
WP_004087353.1|1383654_1384632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004087355.1|1384890_1385337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097983.1|1385440_1386685_-|tail	tail fiber protein	tail	A4PE46	Ralstonia_virus	32.7	1.5e-08
WP_011097869.1|1386688_1387249_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	26.8	8.5e-07
WP_011097984.1|1387245_1388391_-|plate	baseplate J/gp47 family protein	plate	D0UIH5	Aggregatibacter_phage	49.2	2.1e-97
WP_004089252.1|1388489_1388786_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	58.1	3.3e-26
WP_004089254.1|1388789_1389095_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	43.6	1.1e-11
WP_011097986.1|1389105_1389459_-	hypothetical protein	NA	Q7Y5S5	Haemophilus_phage	49.6	8.2e-24
WP_004090764.1|1389455_1390097_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	37.3	1.1e-31
WP_004090766.1|1390093_1390924_-	hypothetical protein	NA	D0UIH8	Aggregatibacter_phage	51.1	2.0e-76
WP_011097873.1|1390920_1391238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004090769.1|1391237_1392008_-	hypothetical protein	NA	Q7Y5T0	Haemophilus_phage	34.8	2.9e-29
WP_004091377.1|1392118_1392346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011097988.1|1392329_1392596_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SB46	Streptococcus_phage	43.9	3.4e-14
WP_011097989.1|1392606_1394496_-	hypothetical protein	NA	D0UII2	Aggregatibacter_phage	27.7	7.5e-23
WP_014607750.1|1394452_1394617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004085005.1|1394643_1395066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097990.1|1395062_1395500_-	DUF3277 family protein	NA	Q7Y5T4	Haemophilus_phage	62.4	1.4e-44
WP_080502629.1|1397574_1398174_+	hypothetical protein	NA	C8CLG0	Xylella_phage	97.5	5.5e-113
WP_011097962.1|1398170_1398449_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	100.0	1.6e-46
WP_012382646.1|1398450_1398813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011097622.1|1398897_1400316_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	99.8	4.4e-278
WP_012382647.1|1400312_1400477_+	hypothetical protein	NA	C8CLF6	Xylella_phage	92.6	5.7e-20
WP_011097965.1|1400469_1400727_+	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	87.1	4.7e-37
WP_011097994.1|1400716_1401736_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	92.3	3.7e-178
WP_004088646.1|1401802_1403740_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.3	1.2e-68
1403210:1403224	attR	GGTTGGTTCGTCCAG	NA	NA	NA	NA
WP_011097995.1|1403901_1406283_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	29.1	1.4e-10
>prophage 7
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	1579361	1585192	2537329		Xylella_phage(33.33%)	10	NA	NA
WP_011098057.1|1579361_1580075_-	site-specific DNA-methyltransferase	NA	A0A2P1CGF5	Mycobacterium_phage	52.3	7.9e-58
WP_011098058.1|1580425_1580707_+	excinuclease ABC subunit A	NA	NA	NA	NA	NA
WP_004089519.1|1580716_1581016_+	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	45.9	1.1e-13
WP_004085025.1|1581195_1581531_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_004089517.1|1581527_1581782_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_011098059.1|1581834_1582533_-	hypothetical protein	NA	C8CLH7	Xylella_phage	79.6	5.8e-98
WP_004090687.1|1582661_1583072_-	hypothetical protein	NA	A0A088F6Y8	Sulfitobacter_phage	43.9	8.4e-12
WP_011098061.1|1583119_1583809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382665.1|1583789_1584896_-	YdaU family protein	NA	A0A0R6PKK6	Moraxella_phage	48.4	1.2e-17
WP_080513037.1|1584892_1585192_-	hypothetical protein	NA	C8CLG1	Xylella_phage	80.8	1.3e-41
>prophage 8
NZ_CP040799	Xylella fastidiosa subsp. fastidiosa strain Bakersfield-1 chromosome, complete genome	2537329	2027196	2036398	2537329		Xylella_phage(100.0%)	12	NA	NA
WP_004087234.1|2027196_2027598_+	hypothetical protein	NA	C8CLG7	Xylella_phage	95.5	5.2e-67
WP_012382634.1|2027594_2027786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382635.1|2027809_2028001_+	hypothetical protein	NA	C8CLG6	Xylella_phage	78.1	8.1e-18
WP_004090711.1|2028032_2028230_+	hypothetical protein	NA	C8CLG5	Xylella_phage	92.2	7.0e-25
WP_012382636.1|2028216_2028714_+	hypothetical protein	NA	C8CLG4	Xylella_phage	87.2	3.0e-48
WP_011097959.1|2028710_2029988_+	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	94.6	4.3e-232
WP_004090881.1|2029987_2030554_+	DUF2815 family protein	NA	C8CLG2	Xylella_phage	97.3	8.3e-103
WP_012382638.1|2030544_2032152_+	hypothetical protein	NA	C8CLG1	Xylella_phage	71.0	1.2e-186
WP_165804221.1|2032153_2034334_+	DNA polymerase	NA	C8CLG0	Xylella_phage	99.7	0.0e+00
WP_011097962.1|2034330_2034609_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	100.0	1.6e-46
WP_011098229.1|2034610_2034895_-	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_011098230.1|2034979_2036398_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	99.8	7.6e-278
