assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009662475.1_ASM966247v1	NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	1	106850-106992	1	PILER-CR	no		PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	Orphan	AAAAGTTACCAACTTTATTTGT	22	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	NA|55aa|up_9|NZ_CP045571.1_92747_92912_-,NA|90aa|up_5|NZ_CP045571.1_96861_97131_-,NA|181aa|up_1|NZ_CP045571.1_103163_103706_+,NA	NA|55aa|up_9|NZ_CP045571.1_92747_92912_-	NA	NA|82aa|up_8|NZ_CP045571.1_93075_93321_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|69aa|up_7|NZ_CP045571.1_93342_93549_-	PRK13748, PRK13748, putative mercuric reductase; Provisional	NA|837aa|up_6|NZ_CP045571.1_94029_96540_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|90aa|up_5|NZ_CP045571.1_96861_97131_-	NA	NA|426aa|up_4|NZ_CP045571.1_97369_98647_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|460aa|up_3|NZ_CP045571.1_98643_100023_+	pfam16576, HlyD_D23, Barrel-sandwich domain of CusB or HlyD membrane-fusion	NA|1037aa|up_2|NZ_CP045571.1_100015_103126_+	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|181aa|up_1|NZ_CP045571.1_103163_103706_+	NA	NA|650aa|up_0|NZ_CP045571.1_104273_106223_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|177aa|down_0|NZ_CP045571.1_107165_107696_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|96aa|down_1|NZ_CP045571.1_107718_108006_-	pfam13591, MerR_2, MerR HTH family regulatory protein	NA|321aa|down_2|NZ_CP045571.1_108021_108984_-	PRK10266, PRK10266, curved DNA-binding protein	NA|710aa|down_3|NZ_CP045571.1_109100_111230_+	PRK11773, uvrD, DNA-dependent helicase II; Provisional	NA|147aa|down_4|NZ_CP045571.1_111309_111750_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|311aa|down_5|NZ_CP045571.1_111766_112699_-	PRK05231, PRK05231, homoserine kinase; Provisional	NA|121aa|down_6|NZ_CP045571.1_112726_113089_-	pfam11191, DUF2782, Protein of unknown function (DUF2782)	NA|240aa|down_7|NZ_CP045571.1_113106_113826_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|909aa|down_8|NZ_CP045571.1_113895_116622_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|421aa|down_9|NZ_CP045571.1_116618_117881_-	PRK10537, PRK10537, voltage-gated potassium channel protein
GCF_009662475.1_ASM966247v1	NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	2	634677-634823	2	PILER-CR	no	RT	PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	Unclear	ATCGTCTACCGGGTAGACGA	20	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	NA|132aa|up_6|NZ_CP045571.1_629975_630371_-,NA|71aa|up_4|NZ_CP045571.1_631090_631303_-,NA|98aa|up_3|NZ_CP045571.1_631265_631559_-,NA|198aa|up_1|NZ_CP045571.1_632973_633567_-,NA|307aa|down_1|NZ_CP045571.1_638684_639605_+,NA|102aa|down_3|NZ_CP045571.1_643193_643499_-,NA|58aa|down_4|NZ_CP045571.1_643728_643902_+,NA|177aa|down_5|NZ_CP045571.1_643888_644419_+	NA|314aa|up_9|NZ_CP045571.1_626418_627360_+	cd01948, EAL, EAL domain	NA|415aa|up_8|NZ_CP045571.1_627956_629201_-	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|257aa|up_7|NZ_CP045571.1_629202_629973_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|132aa|up_6|NZ_CP045571.1_629975_630371_-	NA	NA|218aa|up_5|NZ_CP045571.1_630465_631119_-	pfam10502, Peptidase_S26, Signal peptidase, peptidase S26	NA|71aa|up_4|NZ_CP045571.1_631090_631303_-	NA	NA|98aa|up_3|NZ_CP045571.1_631265_631559_-	NA	NA|457aa|up_2|NZ_CP045571.1_631606_632977_-	PRK13825, PRK13825, conjugal transfer protein TraB; Provisional	NA|198aa|up_1|NZ_CP045571.1_632973_633567_-	NA	NA|99aa|up_0|NZ_CP045571.1_634050_634347_+	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|684aa|down_0|NZ_CP045571.1_636110_638162_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|307aa|down_1|NZ_CP045571.1_638684_639605_+	NA	RT|288aa|down_2|NZ_CP045571.1_639676_640540_+	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|102aa|down_3|NZ_CP045571.1_643193_643499_-	NA	NA|58aa|down_4|NZ_CP045571.1_643728_643902_+	NA	NA|177aa|down_5|NZ_CP045571.1_643888_644419_+	NA	NA|163aa|down_6|NZ_CP045571.1_644700_645189_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|85aa|down_7|NZ_CP045571.1_645216_645471_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|84aa|down_8|NZ_CP045571.1_645467_645719_-	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	NA|687aa|down_9|NZ_CP045571.1_645861_647922_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
GCF_009662475.1_ASM966247v1	NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3	1459443-1459581	3	PILER-CR	no		PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	Orphan	AAAGTTACCAACTTTATTTG	20	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	NA|54aa|up_9|NZ_CP045571.1_1448229_1448391_-,NA|92aa|down_0|NZ_CP045571.1_1459730_1460006_+,NA|442aa|down_1|NZ_CP045571.1_1462045_1463371_-,NA|128aa|down_2|NZ_CP045571.1_1463951_1464335_+,NA|67aa|down_6|NZ_CP045571.1_1468551_1468752_-,NA|116aa|down_8|NZ_CP045571.1_1469717_1470065_-	NA|54aa|up_9|NZ_CP045571.1_1448229_1448391_-	NA	NA|344aa|up_8|NZ_CP045571.1_1448512_1449544_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|up_7|NZ_CP045571.1_1450407_1450878_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|92aa|up_6|NZ_CP045571.1_1450897_1451173_-	TIGR03481, HpnM, hopanoid biosynthesis associated membrane protein HpnM	NA|358aa|up_5|NZ_CP045571.1_1451328_1452402_-	cd09319, TDT_like_1, The Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|287aa|up_4|NZ_CP045571.1_1452445_1453306_-	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated	NA|299aa|up_3|NZ_CP045571.1_1453612_1454509_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|405aa|up_2|NZ_CP045571.1_1454729_1455944_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|540aa|up_1|NZ_CP045571.1_1456207_1457827_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|405aa|up_0|NZ_CP045571.1_1457923_1459138_-	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain	NA|92aa|down_0|NZ_CP045571.1_1459730_1460006_+	NA	NA|442aa|down_1|NZ_CP045571.1_1462045_1463371_-	NA	NA|128aa|down_2|NZ_CP045571.1_1463951_1464335_+	NA	NA|660aa|down_3|NZ_CP045571.1_1464331_1466311_-	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|125aa|down_4|NZ_CP045571.1_1466354_1466729_-	cd18793, SF2_C_SNF, C-terminal helicase domain of the SNF family helicases	NA|569aa|down_5|NZ_CP045571.1_1466844_1468551_-	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|67aa|down_6|NZ_CP045571.1_1468551_1468752_-	NA	NA|257aa|down_7|NZ_CP045571.1_1468947_1469718_-	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins	NA|116aa|down_8|NZ_CP045571.1_1469717_1470065_-	NA	NA|149aa|down_9|NZ_CP045571.1_1470093_1470540_-	cd02587, HAD_5-3dNT, 5'(3')-deoxyribonucleotidase
GCF_009662475.1_ASM966247v1	NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	4	2189332-2189420	1	CRISPRCasFinder	no		PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	Orphan	CCTGCGAAGGGATTGCTCCCCGCA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,TnsE_C,csa3,Cas9_archaeal,DEDDh,RT,cas14j,TnpB_regular.1,c2c8_V-U2,c2c9_V-U4,cas3,DinG	NA|332aa|up_4|NZ_CP045571.1_2184308_2185304_-,NA|114aa|up_3|NZ_CP045571.1_2185330_2185672_-,NA|83aa|up_0|NZ_CP045571.1_2189008_2189257_-,NA|151aa|down_1|NZ_CP045571.1_2190454_2190907_-,NA|386aa|down_3|NZ_CP045571.1_2191342_2192500_-,NA|558aa|down_6|NZ_CP045571.1_2195220_2196894_+	NA|253aa|up_9|NZ_CP045571.1_2179168_2179927_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|507aa|up_8|NZ_CP045571.1_2179944_2181465_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|510aa|up_7|NZ_CP045571.1_2181750_2183280_-	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL	NA|83aa|up_6|NZ_CP045571.1_2183290_2183539_-	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|244aa|up_5|NZ_CP045571.1_2183587_2184319_-	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ	NA|332aa|up_4|NZ_CP045571.1_2184308_2185304_-	NA	NA|114aa|up_3|NZ_CP045571.1_2185330_2185672_-	NA	NA|833aa|up_2|NZ_CP045571.1_2185694_2188193_-	PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional	NA|133aa|up_1|NZ_CP045571.1_2188164_2188563_-	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional	NA|83aa|up_0|NZ_CP045571.1_2189008_2189257_-	NA	NA|300aa|down_0|NZ_CP045571.1_2189499_2190399_-	TIGR02782, conjugal_transfer_protein, P-type conjugative transfer ATPase TrbB	NA|151aa|down_1|NZ_CP045571.1_2190454_2190907_-	NA	NA|64aa|down_2|NZ_CP045571.1_2191075_2191267_+	PRK00285, ihfA, integration host factor subunit alpha; Reviewed	NA|386aa|down_3|NZ_CP045571.1_2191342_2192500_-	NA	NA|405aa|down_4|NZ_CP045571.1_2192784_2193999_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|316aa|down_5|NZ_CP045571.1_2194280_2195228_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|558aa|down_6|NZ_CP045571.1_2195220_2196894_+	NA	NA|505aa|down_7|NZ_CP045571.1_2196903_2198418_-	pfam04917, Shufflon_N, Bacterial shufflon protein, N-terminal constant region	NA|155aa|down_8|NZ_CP045571.1_2198435_2198900_-	pfam07419, PilM, PilM	NA|328aa|down_9|NZ_CP045571.1_2199223_2200207_-	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
