The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	104273	116622	3415726		Bacillus_phage(33.33%)	10	NA	NA
WP_153940356.1|104273_106223_-	diguanylate cyclase	NA	G3MA91	Bacillus_virus	33.1	9.8e-18
WP_024894514.1|107165_107696_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	38.0	3.6e-23
WP_010640796.1|107718_108006_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024894515.1|108021_108984_-	DnaJ domain-containing protein	NA	A0A2L0UZR4	Agrobacterium_phage	29.8	2.1e-21
WP_031575890.1|109100_111230_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.6	2.0e-117
WP_024894517.1|111309_111750_+	ComEA family DNA-binding protein	NA	NA	NA	NA	NA
WP_024894518.1|111766_112699_-	homoserine kinase	NA	NA	NA	NA	NA
WP_024894519.1|112726_113089_-	DUF2782 domain-containing protein	NA	NA	NA	NA	NA
WP_024894520.1|113106_113826_-	TIGR00730 family Rossman fold protein	NA	A0A1D8KU27	Synechococcus_phage	35.1	1.1e-19
WP_024894521.1|113895_116622_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	31.4	8.5e-68
>prophage 2
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	356931	365254	3415726		Staphylococcus_phage(50.0%)	10	NA	NA
WP_031573636.1|356931_358176_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	55.5	1.4e-97
WP_035210942.1|358181_358685_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_081577438.1|358674_359775_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	34.8	1.1e-39
WP_010641384.1|359778_360435_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	39.0	4.6e-20
WP_031573642.1|360431_361553_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	37.4	1.0e-51
WP_010641389.1|361562_362027_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.0	9.4e-36
WP_031573646.1|362033_362480_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_031573649.1|362592_363168_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_024894705.1|363190_363535_-	LapA family protein	NA	NA	NA	NA	NA
WP_024894706.1|363571_365254_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	27.5	9.0e-36
>prophage 3
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	480769	486871	3415726		Escherichia_phage(50.0%)	8	NA	NA
WP_031576046.1|480769_481276_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	39.5	4.1e-16
WP_031572551.1|481549_482686_-	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	45.1	4.9e-78
WP_080707819.1|482699_483569_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.3	8.8e-35
WP_010641579.1|483632_484139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010641580.1|484138_484477_-	DUF3579 domain-containing protein	NA	NA	NA	NA	NA
WP_031572536.1|484540_485089_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	55.5	3.9e-49
WP_010641583.1|485085_485970_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	55.0	7.0e-88
WP_010641585.1|485959_486871_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	47.6	4.1e-67
>prophage 4
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	617860	674560	3415726	transposase	Acidithiobacillus_phage(20.0%)	45	NA	NA
WP_153940414.1|617860_618910_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_153940902.1|622789_624115_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_065975116.1|624072_624831_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	59.2	2.2e-74
WP_070114524.1|624848_626369_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	53.3	1.5e-146
WP_153940416.1|626418_627360_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_153940417.1|627956_629201_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_153940418.1|629202_629973_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_031575425.1|629975_630371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940419.1|630465_631119_-	S26 family signal peptidase	NA	NA	NA	NA	NA
WP_080707873.1|631090_631303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940420.1|631265_631559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940421.1|631606_632977_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_153940422.1|632973_633567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075324056.1|634050_634347_+	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	47.3	9.3e-13
WP_031575411.1|634808_635492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940423.1|636110_638162_-	DNA topoisomerase 3	NA	A0A1X9I6W8	Streptococcus_phage	30.1	3.0e-33
WP_153940424.1|638684_639605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170286686.1|639676_640540_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	29.2	1.3e-27
WP_031575399.1|643193_643499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286687.1|643728_643902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940426.1|643888_644419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_140390914.1|644700_645189_+	DUF2442 domain-containing protein	NA	NA	NA	NA	NA
WP_010641842.1|645216_645471_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_010641843.1|645467_645719_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_081576824.1|645861_647922_-	transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_153940903.1|652159_653125_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	31.2	1.0e-23
WP_153940427.1|653091_653367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940376.1|653483_654746_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	44.9	3.4e-88
WP_010641848.1|656323_656596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081576813.1|656634_657927_-	Y-family DNA polymerase	NA	A0A1W6JNT0	Morganella_phage	38.7	1.1e-70
WP_081576814.1|657929_658400_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	51.2	5.1e-29
WP_081576815.1|658488_660075_-	APC family permease	NA	NA	NA	NA	NA
WP_140390916.1|661413_661662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081576817.1|662110_663673_+	APC family permease	NA	NA	NA	NA	NA
WP_153940428.1|663951_664638_+	DUF1275 family protein	NA	NA	NA	NA	NA
WP_081576825.1|665005_665905_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_081576826.1|665910_666165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081576818.1|668049_668907_-	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_081576819.1|669329_669578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940429.1|669633_669780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940366.1|669839_671102_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.4	2.4e-89
WP_153940430.1|671177_671558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081576820.1|671574_672309_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_081577182.1|672771_673248_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_065972780.1|673474_674560_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	798695	854989	3415726	tRNA,transposase,integrase	Mycobacterium_phage(50.0%)	48	833214:833273	845395:846809
WP_010636853.1|798695_798983_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_024894153.1|798995_800468_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_081577189.1|800470_801904_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_024894155.1|802000_802555_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_024894156.1|802888_803377_-	glutathione peroxidase	NA	A0A1S7DLQ4	Molluscum_contagiosum_virus	40.7	1.5e-15
WP_139110705.1|803428_804091_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_031569193.1|804496_805465_+	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_031569195.1|805494_807645_+	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_010643012.1|807714_808353_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA	NA
WP_010643010.1|808349_808715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940459.1|808741_809677_+	cytochrome C oxidase assembly protein	NA	NA	NA	NA	NA
WP_153940460.1|809698_810667_+	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
WP_010636841.1|810681_811107_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010636839.1|811497_812010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139110688.1|812054_812549_+	thiosulfate oxidation carrier protein SoxY	NA	NA	NA	NA	NA
WP_139110687.1|812592_812925_+	thiosulfate oxidation carrier complex protein SoxZ	NA	NA	NA	NA	NA
WP_035209742.1|812990_814700_+	thiosulfohydrolase SoxB	NA	NA	NA	NA	NA
WP_024895115.1|814742_815474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031569888.1|815484_817299_+	cytochrome c biogenesis protein ResB	NA	NA	NA	NA	NA
WP_010636830.1|817346_817730_+	sulfur oxidation c-type cytochrome SoxX	NA	NA	NA	NA	NA
WP_031569886.1|817758_818622_+	sulfur oxidation c-type cytochrome SoxA	NA	NA	NA	NA	NA
WP_024895119.1|818690_819872_+	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA	NA
WP_010636824.1|820166_820784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010636822.1|820902_821328_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_031572923.1|821558_823106_-	fibronectin/fibrinogen-binding protein	NA	M1H1U8	Paramecium_bursaria_Chlorella_virus	40.2	5.4e-11
WP_031572922.1|823117_824773_-	sulfate adenylyltransferase	NA	A0A2P1ELS9	Moumouvirus	36.0	2.4e-97
WP_031572919.1|824783_825353_-	adenine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_031572916.1|825418_826636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031572913.1|826632_830025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051690640.1|830017_830689_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_031572908.1|830708_832172_-	DUF3375 domain-containing protein	NA	NA	NA	NA	NA
WP_031572906.1|832214_832646_-	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_010636975.1|832649_832886_-	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
833214:833273	attL	GAGCTATAGTCAAATCTGGTGTATGAGCATTTTCTGACATAGATCAGGCGGCGGTCTGTT	NA	NA	NA	NA
WP_153940366.1|833256_834519_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.4	2.4e-89
WP_153940461.1|836077_837340_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	44.9	4.5e-88
WP_081577140.1|837473_839570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940462.1|839901_841158_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_153940463.1|841380_841620_-	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
WP_153940464.1|841845_843579_-	recombinase family protein	NA	A0A2K9V2Y5	Faecalibacterium_phage	26.5	6.7e-18
WP_153940366.1|844148_845411_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.4	2.4e-89
WP_153940465.1|845470_845902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170286693.1|845991_847674_-	recombinase family protein	NA	A0A142LP20	Marinitoga_camini_virus	23.6	1.2e-11
845395:846809	attR	AACAGACCGCCGCCTGATCTATGTCAGAAAATGCTCATACACCAGATTTGACTATAGCTCAGCGCAGCGTACGAAGGTGCAAGCACAAGATCTTCCCAAGGCGCTAAACATTTCAGAAGGGGACTACCAGAAACTGATTTCCGGTCCCGAGCAGTCGCTGACGCTGTCAGCCACTGTATTCGCACAGGTGGCAGATTGGCTCCAAATCTCGATCGTCGGCACGCTCGCAGCAGCAGGAGTTGGCGATTTTGATGCGCGACATGATCAGCATTTAAAGAGTCAGTGCATCGATTTTGCCCTGGATAAAATCGCTCGGCATCCCGTGCTCGGAAAGCTGCTGCCGGTCGAGATATACCTTGCTGAGGAACGGGTGCGTGAAAGCTTTGTGCGCCTGTATCAAGAAGAAATGGGGACGCAGTTAATCCCAGAGGAGGTAGACTGGGACGAAATTCTGGATGCGATGATAGTTCTCCAGGTCCAGTCCAGAGCGTATCGTCAACAAATATAAGACATCGTTTTCAAGACCGCCTTTGTGCGGTCTTTTTTTTTTGCACATAAAAACCCCGGAAGATCCGGGGCTGAAACTGACTACTGATATTACGCGATGATCTCACACAGCCGGTCTATCTTCCAGGTCGTGGGCCTTGTATGGCTGGCTTGGACAGTATATTGGGCTGTGATCACATGCTCCTCTATCTCCTCGGAATTTGTAGCTGTAGCAACAGCCACTCCGATATCCATGTGGATTTCAAACAGACAAGCCTTTTTGGGGGTCCGACCGCAAAACTCAATCACGGGAAACAGCTTCTTCAAAATGGGCCGTAACCGGGCAAGGTGCTGGGTATCCTGCAGCAATTGATGGATAATTTCCTCCGTGGTGATTTCCTGTTGTTTGCGGATGTTATCCGGATCCGTCACGAGGATCTGTTGTTCAAGTGCGCGGCACTCCTCTTTCATCGTCGTGAGGCACGTAAAAAGCCTGGAAATGCTATCTACCAGCGTGTCGTCCCCACTGCTGATGTATTGAGCCAATATTCCCTGATAAGCTTTTTCCTGAATGCGGATTTCTTTCCGTAGTCTGGTCACTGCCTGCATATCGTCCGTTTTTAACTTATCCGCTAATCTTTCACGGTATGCTATTAATACATCAGGGTCAGCTACGACCTGCTTTATGACCGCCCCCAAAAGTTCCAGGACCCCGTCGACTCCAGCACCGCTTGTTTGTGCCGGAAGATCGGGGCTAACGGCTTTGCGGCTCGCACAAGCAGAGCAATAAAGCACTCTGGATGTATGGCTGGGAGAGGTTAACGATAAATTACCCCCGCAGATCCCACAAGTGACAAGGCCCGCGAGAAGGTGGTCCGATCGCGTTTTTTGGCCTGTGTACCCTTTAACCTTGTTGCATTGGTGCCACA	NA	NA	NA	NA
WP_065975079.1|847953_848496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065975078.1|848612_849341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940467.1|849777_851040_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.2	5.3e-89
WP_081577540.1|851422_852262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170286694.1|852269_853709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940376.1|853726_854989_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	44.9	3.4e-88
>prophage 6
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	968204	1025256	3415726	tRNA,transposase,integrase,protease	Streptococcus_phage(15.38%)	55	973968:973984	1022923:1022939
WP_051690612.1|968204_969659_+|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	1.9e-18
WP_031572326.1|969762_971565_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	25.0	9.4e-23
WP_024893897.1|971584_972376_+	signal peptidase I	NA	NA	NA	NA	NA
WP_031572325.1|972461_972878_+	DUF4845 domain-containing protein	NA	NA	NA	NA	NA
WP_010640229.1|973205_973886_+	ribonuclease III	NA	E5ERU0	Ostreococcus_lucimarinus_virus	31.3	4.0e-19
WP_024893895.1|973878_974793_+	GTPase Era	NA	NA	NA	NA	NA
973968:973984	attL	CCTGCTCAATCATCTGG	NA	NA	NA	NA
WP_010640233.1|974782_975523_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_024893893.1|975542_976268_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_031572324.1|976264_976654_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_031572323.1|976657_977980_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	37.6	3.5e-75
WP_031572322.1|977981_978923_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	4.0e-17
WP_024893890.1|978919_979705_+|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	36.8	4.1e-39
WP_010640244.1|979697_980540_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_031572321.1|981180_982329_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	28.2	3.5e-31
WP_031572320.1|982512_982749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031572319.1|982961_983222_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031572318.1|983855_984317_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_010639780.1|984331_984517_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010639782.1|984554_985580_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_031572317.1|985576_986521_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_031572316.1|986575_987511_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_031572315.1|987510_988260_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA	NA
WP_031572314.1|988344_988593_+	acyl carrier protein	NA	A0A1S5R3K8	Pseudomonas_phage	41.8	3.2e-06
WP_031572313.1|988631_989873_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_031572312.1|989902_990733_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_031572311.1|990732_991740_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_031572310.1|991736_992387_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	40.5	4.4e-31
WP_031572309.1|992383_993385_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_081577520.1|993368_993731_+	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_153940443.1|995723_996809_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_153940476.1|996721_997984_+	phospholipase	NA	NA	NA	NA	NA
WP_024894748.1|998569_999016_-	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	35.8	5.5e-17
WP_080707857.1|999643_1000057_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_051690717.1|1000232_1000799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081576651.1|1002569_1003685_+	cellulase family glycosylhydrolase	NA	NA	NA	NA	NA
WP_153940477.1|1003738_1003969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940478.1|1004261_1004933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077218551.1|1005469_1005718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010636705.1|1005833_1006082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940479.1|1007341_1007773_+|transposase	IS200/IS605 family transposase	transposase	G9CU69	Helicobacter_phage	31.7	8.2e-10
WP_031573976.1|1007944_1009051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010636697.1|1009206_1009734_-	DedA family protein	NA	NA	NA	NA	NA
WP_031573973.1|1009733_1010324_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_010636694.1|1010361_1010961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051690691.1|1011042_1011309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031573965.1|1011305_1011974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031573962.1|1011973_1013521_-	glucan biosynthesis protein	NA	NA	NA	NA	NA
WP_153940443.1|1013976_1015062_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_153940480.1|1016259_1016397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035210302.1|1017956_1018313_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_155270473.1|1018351_1019062_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A077KET4	Ralstonia_phage	44.3	4.9e-44
WP_051690548.1|1019134_1019341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940481.1|1019788_1020961_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_153940482.1|1020957_1022391_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_065973572.1|1024041_1025256_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	23.2	2.6e-08
1022923:1022939	attR	CCAGATGATTGAGCAGG	NA	NA	NA	NA
>prophage 7
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	1335022	1368583	3415726	transposase,integrase	Streptococcus_phage(33.33%)	40	1325540:1325554	1365273:1365287
1325540:1325554	attL	CGGAGTCAGTCAGGC	NA	NA	NA	NA
WP_170286698.1|1335022_1336336_+|integrase	integrase family protein	integrase	NA	NA	NA	NA
WP_153940495.1|1336875_1338378_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_153940907.1|1338384_1338999_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_170286699.1|1339062_1339848_-	DUF2063 domain-containing protein	NA	NA	NA	NA	NA
WP_153940497.1|1339862_1340687_-	DUF692 family protein	NA	NA	NA	NA	NA
WP_153940498.1|1340743_1341010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940499.1|1341076_1341694_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_153940500.1|1341719_1342256_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_153940501.1|1342366_1344211_-	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_153940502.1|1344421_1344985_-	OsmC family protein	NA	NA	NA	NA	NA
WP_153940503.1|1345059_1345398_-	DsrE family protein	NA	NA	NA	NA	NA
WP_153940504.1|1345413_1346685_-	MFS transporter	NA	NA	NA	NA	NA
WP_153940505.1|1346681_1347041_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_153940506.1|1347037_1347775_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_170286700.1|1348019_1348553_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_077273537.1|1348661_1349066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940508.1|1349215_1349824_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_038472813.1|1349837_1350080_-	SHOCT domain-containing protein	NA	NA	NA	NA	NA
WP_153940509.1|1350076_1350568_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_153940510.1|1350554_1351220_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_153940511.1|1351346_1351736_+	metalloregulator ArsR/SmtB family transcription factor	NA	E4ZFI8	Streptococcus_phage	30.3	3.9e-11
WP_153940512.1|1351744_1352698_+	permease	NA	NA	NA	NA	NA
WP_153940513.1|1352900_1353368_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_153940514.1|1353376_1353577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940515.1|1353672_1354014_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_153940516.1|1354015_1354231_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_153940517.1|1354267_1354921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940518.1|1354932_1355790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940519.1|1355794_1356145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024895300.1|1356161_1356350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024895299.1|1356382_1356958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940520.1|1356954_1357314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286701.1|1357316_1358354_-	ParB N-terminal domain-containing protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	34.5	1.1e-12
WP_153940522.1|1359597_1360905_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_081577566.1|1361446_1362037_+|transposase	IS607 family transposase	transposase	F9VHY9	Thermus_phage	44.3	9.8e-30
WP_081577567.1|1362033_1363758_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	NA	NA	NA	NA
WP_153940523.1|1363925_1364207_+	superinfection immunity protein	NA	NA	NA	NA	NA
WP_153940524.1|1364379_1365732_+|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
1365273:1365287	attR	CGGAGTCAGTCAGGC	NA	NA	NA	NA
WP_081577569.1|1366088_1366724_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_153940908.1|1367683_1368583_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	1373802	1422966	3415726	transposase,integrase	Lysinibacillus_phage(14.29%)	49	1361337:1361351	1413036:1413050
1361337:1361351	attL	GAGCAAGCCTTCAGG	NA	NA	NA	NA
WP_012387019.1|1373802_1375017_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	26.8	1.8e-09
WP_153940527.1|1375032_1376436_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_153940528.1|1376457_1377543_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_065973832.1|1377626_1377929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142087284.1|1378170_1378416_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_153940529.1|1378501_1378960_+	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_031571045.1|1378956_1379403_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_153940530.1|1379596_1381318_-	chloride channel protein	NA	NA	NA	NA	NA
WP_153940531.1|1381349_1381910_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_153940532.1|1381983_1382493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065980270.1|1383013_1383796_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_081576663.1|1384041_1384959_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_081576664.1|1384988_1385567_-	acyloxyacyl hydrolase	NA	NA	NA	NA	NA
WP_153940533.1|1385704_1386595_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_031573023.1|1386622_1387630_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_031573020.1|1387781_1388126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080707830.1|1388162_1388549_-	DUF202 domain-containing protein	NA	NA	NA	NA	NA
WP_051690649.1|1388541_1388817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031573013.1|1388865_1389567_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_031573011.1|1389581_1390523_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_024894887.1|1390535_1391228_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_153940909.1|1391239_1394110_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_153940534.1|1394207_1394525_-	DUF202 domain-containing protein	NA	NA	NA	NA	NA
WP_153940535.1|1394869_1395136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940536.1|1395219_1395528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940910.1|1396023_1397304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940537.1|1397629_1397983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940538.1|1398206_1398560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940539.1|1398631_1398928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940540.1|1399041_1399683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940541.1|1399792_1400101_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_153940542.1|1400094_1400331_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_153940543.1|1400416_1401721_-	DUF444 family protein	NA	A0A1I9S5U5	Bacillus_phage	28.5	4.3e-09
WP_170286702.1|1401746_1401953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940545.1|1401966_1402242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940546.1|1403693_1404902_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	47.7	8.0e-95
WP_024894873.1|1407364_1407586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024894872.1|1407575_1407914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024894871.1|1408601_1409156_+	HNH endonuclease	NA	A0A248SKR4	Salicola_phage	50.3	1.3e-44
WP_153940547.1|1409268_1410087_+	TnsA endonuclease N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_153940548.1|1410070_1412146_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_153940549.1|1412142_1413798_+	AAA family ATPase	NA	NA	NA	NA	NA
1413036:1413050	attR	GAGCAAGCCTTCAGG	NA	NA	NA	NA
WP_153940550.1|1414165_1415428_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.2	1.2e-88
WP_153940551.1|1415431_1416775_+	TniQ family protein	NA	NA	NA	NA	NA
WP_153940552.1|1416749_1418342_+	transcriptional antiterminator	NA	NA	NA	NA	NA
WP_170286703.1|1418782_1419043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940553.1|1419119_1419977_+	sigma-70 family RNA polymerase sigma factor	NA	F4YCU2	Synechococcus_phage	33.8	6.0e-36
WP_153940911.1|1420257_1421223_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	31.5	9.1e-25
WP_065972780.1|1421880_1422966_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	1448512	1492405	3415726	transposase	Lysinibacillus_phage(15.38%)	50	NA	NA
WP_153940568.1|1448512_1449544_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_170286704.1|1450407_1450878_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153940570.1|1450897_1451173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940571.1|1451328_1452402_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
WP_153940572.1|1452445_1453306_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2I5ARC7	Synechococcus_phage	29.6	1.2e-12
WP_153940573.1|1453612_1454509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012387019.1|1454729_1455944_+|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	26.8	1.8e-09
WP_153940574.1|1456207_1457827_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_065973799.1|1457923_1459138_-|transposase	ISAzo13 family transposase	transposase	NA	NA	NA	NA
WP_081576759.1|1459730_1460006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940913.1|1462045_1463371_-	porin	NA	NA	NA	NA	NA
WP_139112155.1|1463951_1464335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065974094.1|1464331_1466311_-	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	34.5	4.0e-83
WP_139112156.1|1466354_1466729_-	SWF/SNF helicase family protein	NA	A0A0U1UNQ7	Pseudomonas_phage	44.0	4.3e-15
WP_153940575.1|1466844_1468551_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	NA	NA	NA	NA
WP_065973872.1|1468551_1468752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940577.1|1468947_1469718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940578.1|1469717_1470065_-	hypothetical protein	NA	A0A1X9HVL1	Ruegeria_phage	39.5	1.9e-12
WP_051690708.1|1470093_1470540_-	hypothetical protein	NA	K4F6C9	Cronobacter_phage	44.9	6.3e-29
WP_153940579.1|1470591_1470774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940580.1|1470875_1471448_-	hypothetical protein	NA	V5YTR1	Pseudomonas_phage	52.6	1.2e-11
WP_170286705.1|1471441_1472305_-	DUF4326 domain-containing protein	NA	A0A0H4INX7	Stenotrophomonas_phage	47.4	2.0e-31
WP_077273528.1|1472509_1472779_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_065973870.1|1472801_1473218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031574387.1|1474841_1475033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031574390.1|1475090_1475366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031574393.1|1475457_1476204_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_031574395.1|1476200_1476602_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_170286706.1|1476725_1477010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065973869.1|1477071_1477308_-	STAS-like domain-containing protein	NA	NA	NA	NA	NA
WP_031574404.1|1477354_1478239_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_077273647.1|1478462_1478969_-	uracil-DNA glycosylase	NA	A0A1B1IWN2	uncultured_Mediterranean_phage	32.9	1.9e-05
WP_139112117.1|1479069_1479537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065974883.1|1479703_1482121_-	hypothetical protein	NA	A0A248SJQ0	Salicola_phage	30.9	1.6e-49
WP_031574433.1|1482373_1482571_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_031574436.1|1482622_1482901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031574438.1|1483719_1484055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170286707.1|1484065_1485967_+	DNA ligase	NA	A0A218MKC8	uncultured_virus	25.1	8.9e-32
WP_031574444.1|1485978_1486353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940583.1|1486804_1487674_-	metallophosphoesterase	NA	A0A291L9W7	Bordetella_phage	37.4	2.1e-20
WP_153940584.1|1487738_1488119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286708.1|1488257_1488791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940586.1|1488787_1489072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065974888.1|1489091_1489439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286709.1|1489390_1490041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940587.1|1490138_1490300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065974890.1|1490289_1490532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065974891.1|1490554_1490905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940588.1|1491001_1491133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012387019.1|1491190_1492405_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	26.8	1.8e-09
>prophage 10
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	1526513	1619498	3415726	transposase,integrase,protease	Escherichia_phage(22.22%)	93	1522928:1522942	1622979:1622994
1522928:1522942	attL	TGGCTATGTGGAGGA	NA	NA	NA	NA
WP_031574854.1|1526513_1526933_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
1522928:1522942	attL	TGGCTATGTGGAGGA	NA	NA	NA	NA
WP_035211301.1|1527035_1527710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940605.1|1527711_1528956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940606.1|1528958_1529204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940607.1|1529272_1529962_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_142086132.1|1529978_1530275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_140390952.1|1530289_1531057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081576943.1|1531035_1531242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081576917.1|1531343_1532312_-	lytic transglycosylase domain-containing protein	NA	I6ZXX9	Escherichia_phage	44.2	3.2e-09
WP_081576918.1|1532308_1533541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940608.1|1533556_1534672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286712.1|1534681_1535893_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_081576921.1|1536088_1537183_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_153940610.1|1537196_1538210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940611.1|1538199_1538739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940612.1|1538897_1539581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286713.1|1539987_1541514_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.7	5.1e-46
WP_077273497.1|1542026_1543340_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153940614.1|1543418_1544372_-	permease	NA	NA	NA	NA	NA
WP_153940615.1|1544395_1544770_-	metalloregulator ArsR/SmtB family transcription factor	NA	E4ZFI8	Streptococcus_phage	31.0	4.9e-11
WP_153940616.1|1544896_1545562_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_153940509.1|1545548_1546040_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_038472813.1|1546036_1546279_+	SHOCT domain-containing protein	NA	NA	NA	NA	NA
WP_153940508.1|1546292_1546901_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_153940916.1|1547050_1547461_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_170286700.1|1547569_1548103_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_153940506.1|1548347_1549085_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_153940505.1|1549081_1549441_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_153940504.1|1549437_1550709_+	MFS transporter	NA	NA	NA	NA	NA
WP_153940503.1|1550724_1551063_+	DsrE family protein	NA	NA	NA	NA	NA
WP_153940502.1|1551137_1551701_+	OsmC family protein	NA	NA	NA	NA	NA
WP_153940617.1|1551911_1553756_+	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_153940618.1|1553866_1554403_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_153940499.1|1554428_1555046_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_153940619.1|1555112_1555379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940497.1|1555435_1556260_+	DUF692 family protein	NA	NA	NA	NA	NA
WP_170286714.1|1556274_1557060_+	DUF2063 domain-containing protein	NA	NA	NA	NA	NA
WP_153940621.1|1557152_1558409_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_153940917.1|1558543_1559158_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_153940622.1|1561230_1561704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286715.1|1561690_1563697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940624.1|1563852_1565838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940625.1|1565842_1567075_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_153940626.1|1567242_1567497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940627.1|1567506_1567671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940628.1|1567710_1567998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940629.1|1567999_1568149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940630.1|1568145_1568742_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_153940631.1|1568921_1569110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940632.1|1569113_1569956_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_081576925.1|1569979_1570207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940633.1|1570199_1570667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286716.1|1570742_1571609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024893614.1|1573316_1574051_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	37.8	1.1e-35
1572757:1572771	attR	TGGCTATGTGGAGGA	NA	NA	NA	NA
WP_153940635.1|1574304_1575084_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
1572757:1572771	attR	TGGCTATGTGGAGGA	NA	NA	NA	NA
WP_170286717.1|1575127_1575418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_140391020.1|1576057_1576513_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_153940637.1|1576493_1577813_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_153940638.1|1577861_1578962_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_153940639.1|1578958_1579396_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_153940640.1|1579405_1581214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940641.1|1581200_1581470_+	GIY-YIG nuclease family protein	NA	F2NZ06	Diadromus_pulchellus_ascovirus	40.5	6.3e-08
WP_153940642.1|1581751_1581931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940643.1|1581934_1582510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940644.1|1582531_1583344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940645.1|1583340_1584060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940646.1|1584367_1585750_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_153940647.1|1586587_1588021_-	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA	NA
WP_153940648.1|1589283_1590168_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_170286718.1|1591085_1593509_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_153940650.1|1593738_1595067_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153940651.1|1595137_1598185_+	N-6 DNA methylase	NA	A0A2R2ZGH5	Clostridioides_phage	23.6	1.5e-28
WP_170286719.1|1598447_1598723_-	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_170286720.1|1599006_1599201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170286721.1|1599392_1599764_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_153940654.1|1599992_1600730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940655.1|1600743_1602075_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	40.1	2.5e-89
WP_153940656.1|1602078_1602819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940657.1|1602818_1603979_-	hypothetical protein	NA	A0A2L1IZ21	Streptomyces_phage	49.7	2.9e-94
WP_153940658.1|1604201_1606298_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	34.0	6.5e-92
WP_153940659.1|1606319_1606898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051690672.1|1606930_1607512_-	nucleoside 2-deoxyribosyltransferase	NA	NA	NA	NA	NA
WP_153940660.1|1607575_1607764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940661.1|1607784_1608510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940662.1|1608571_1609702_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_153940663.1|1609691_1611341_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_153940918.1|1611416_1613258_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_153940664.1|1614007_1615459_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_126605065.1|1615643_1616606_+	hydrogenase	NA	NA	NA	NA	NA
WP_153940665.1|1616657_1618256_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_153940666.1|1618347_1618674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940667.1|1618689_1619022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940668.1|1619024_1619498_+|protease	hydrogenase maturation protease	protease	NA	NA	NA	NA
1622979:1622994	attR	CCAAGCAGATTTTCAT	NA	NA	NA	NA
>prophage 11
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	2257937	2308727	3415726	transposase,integrase	Morganella_phage(15.38%)	46	2266186:2266245	2314549:2315719
WP_031568969.1|2257937_2258846_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	30.4	5.2e-14
WP_051690428.1|2259040_2259379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077273660.1|2259434_2260376_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_035209402.1|2260365_2260908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051690425.1|2260974_2263368_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_031568932.1|2263522_2264659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031568930.1|2264655_2265669_-|integrase	site-specific integrase	integrase	W6MYA3	Pseudomonas_phage	41.3	5.8e-54
WP_153940443.1|2266185_2267271_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2266186:2266245	attL	CTAGTGTAGTGTTGCATTCTGTTTGCTGCTTAAATGGCTGTTGGCGCGAATGACTTTTTG	NA	NA	NA	NA
WP_010638078.1|2267992_2268325_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_140391080.1|2268423_2270004_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_080707884.1|2270297_2270801_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010638071.1|2271190_2271508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010638069.1|2271592_2272549_+	DUF932 domain-containing protein	NA	A0A218M383	Acidovorax_phage	37.7	5.8e-48
WP_031576183.1|2272678_2273632_+	YqaJ viral recombinase family protein	NA	A6XMH8	Bacillus_virus	42.7	4.3e-59
WP_031576181.1|2273628_2274492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940798.1|2274756_2276931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940799.1|2276990_2277872_-	NACHT domain-containing protein	NA	NA	NA	NA	NA
WP_031575636.1|2278186_2279299_-	J domain-containing protein	NA	NA	NA	NA	NA
WP_031575634.1|2279440_2280724_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	45.4	1.8e-92
WP_031575632.1|2280730_2281204_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	49.2	1.6e-27
WP_031575630.1|2281196_2281451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031575628.1|2281629_2282322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010638039.1|2282501_2282741_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_029316014.1|2282740_2283151_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_153940366.1|2284532_2285795_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.4	2.4e-89
WP_153940800.1|2286136_2287150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010638032.1|2287154_2287481_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_153940801.1|2287623_2288424_-	EcsC family protein	NA	NA	NA	NA	NA
WP_010638028.1|2288374_2289991_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	43.4	3.9e-105
WP_010638027.1|2290026_2290245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010638026.1|2290241_2290763_-	zeta toxin family protein	NA	NA	NA	NA	NA
WP_010638024.1|2290765_2292034_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	32.5	5.2e-20
WP_153940802.1|2292142_2295109_-	HsdR family type I site-specific deoxyribonuclease	NA	NA	NA	NA	NA
WP_010638019.1|2295205_2295469_-	superinfection immunity protein	NA	NA	NA	NA	NA
WP_010638017.1|2295599_2295899_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_031570374.1|2296016_2296694_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_031570372.1|2296690_2297032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010638012.1|2297333_2297732_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_010638010.1|2297731_2297950_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010638008.1|2298099_2298366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031570363.1|2298502_2300686_-	ATP-dependent RecD-like DNA helicase	NA	A0A1P8DII4	Virus_Rctr197k	32.8	4.7e-53
WP_031570360.1|2300774_2301458_+	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	35.0	3.4e-18
WP_081577267.1|2303077_2304397_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
WP_031570032.1|2304427_2305489_-	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_170286746.1|2305990_2307190_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JPG6	Morganella_phage	31.1	2.1e-39
WP_153940376.1|2307464_2308727_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	44.9	3.4e-88
2314549:2315719	attR	CAAAAAGTCATTCGCGCCAACAGCCATTTAAGCAGCAAACAGAATGCAACACTACACTAGGTAGCATCCTTGAAATATTATTTAACCTACTAATAACTATAGACTTTATACTCAGGTACGATAAATGCTAAACGGATAGTAAAACTTCTCTTACTGGTGCAGCTGATATGAACGCAACCGATTGGAGCACAGCATTTAGAACAAAGAGCTCAATAATATTGATTAGCTTGTTATGCGGCTCACTCTTTGTAGGTATTGCCCAAGCGGAAGGTGCCGCGCATAAATCGGGCAGATTGCAAACAACGTATTCACTCATCCAACAAAGCAATATTCAAAGCCCAACTCTGAAAATCGGTAAGCAGGCGTGGATCCTCGGGAGCGCGGGCACATTGTCTAACCACATGCTAGCAGAGGTTTCTGGTAAGGGTGTTCCTGCCAATTTGCCTTCTGTTAGTCACGATAATAACAGCGTCGTTCTGTGGGACGAAATGGAAACCCACTCCGGGGAAGGGAAAAGTACTATTGAAACGGGTGGGGCAAATAACCAGCAGATACTCAGCATTACTGCAAATCGGTGACAGGATTTTGCATCAAGGAGTGAAGAGGATGAAACCAATAACGCCAGGGTTACTCGTTGGATTGCTTCTGACCCTCACCAGCTATTCGATGAACGCTGTAGCGCTGCCCGAACAAACTTTCAATAACAATCAGACAAGCAGTGTGATTAGTGGTAGTGCATTTGCAAACAGCAACGGCGTTGTTGCCATCAATCAGGCTGCCGGCGTGGCTAATGCCCAGGCCAATAGCGTTAGTATCATAATGGGAGCCAATAAACCTGTTAACAACAGCATTCTGGCGCAGAGTGTAACTTCTGAACCCGACCAAATAGCCACGTCGCAATTAAAGAATTTGAATTCTGTGTCCATTAGTGCCACAGCGTTCAAGGGAGCTGAAGGCATTGCCCAAATCAATCAAGTAGCTGGTTCAGGCAATGCTTCGGCAAACAGCTTCACTCTCGGGATAGCGCCCGGGGTGATTCACTAGTAAGTAGAGACCTTACAACTACTGTTCTACTTCACTTCAGGAGAATATCATGAAAATCTCGACTAGGTTAAGCCCTGTTGCCATTGCTGTTGCGGCTCTTTGCCTCTCTCCGCTGGCCTTTGCAGAC	NA	NA	NA	NA
>prophage 12
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	2385858	2425983	3415726	transposase,integrase	Bacillus_virus(50.0%)	34	2399696:2399712	2433072:2433088
WP_153940809.1|2385858_2386989_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_153940810.1|2386978_2388628_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_170286765.1|2388709_2390545_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_081577243.1|2391178_2391550_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_081577242.1|2391553_2391784_+	SHOCT domain-containing protein	NA	NA	NA	NA	NA
WP_081577261.1|2391813_2392380_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_051690768.1|2392399_2392678_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_031575837.1|2393081_2393396_+	DUF2282 domain-containing protein	NA	NA	NA	NA	NA
WP_081577240.1|2393489_2394365_+	DUF692 domain-containing protein	NA	NA	NA	NA	NA
WP_081577239.1|2394357_2395071_+	putative DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_153940928.1|2395196_2397074_+	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_153940929.1|2397140_2397710_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_153940771.1|2397736_2398369_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
WP_153940772.1|2398475_2399093_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA	NA
2399696:2399712	attL	GACCGCTTCCGCTGCAA	NA	NA	NA	NA
WP_153940812.1|2399734_2400184_-	DUF2442 domain-containing protein	NA	NA	NA	NA	NA
WP_035210192.1|2400198_2400417_-	DUF4160 domain-containing protein	NA	NA	NA	NA	NA
WP_031571354.1|2400469_2401099_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_031571358.1|2401759_2402020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139110685.1|2402194_2402386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024895462.1|2402411_2402606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010636705.1|2403745_2403994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077218551.1|2404109_2404358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940478.1|2404894_2405566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940813.1|2405789_2406683_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_051690537.1|2406938_2409233_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	39.0	2.8e-24
WP_153940781.1|2410546_2411542_-	CZB domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.8	5.0e-10
WP_031573920.1|2411576_2411828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153940814.1|2411894_2414993_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	39.5	1.1e-23
WP_153940815.1|2415227_2415611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031568562.1|2419340_2419979_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_051690403.1|2420023_2421376_-	amino acid permease	NA	NA	NA	NA	NA
WP_153940376.1|2422162_2423425_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	44.9	3.4e-88
WP_031576109.1|2424382_2424586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153940443.1|2424897_2425983_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2433072:2433088	attR	GACCGCTTCCGCTGCAA	NA	NA	NA	NA
>prophage 13
NZ_CP045571	Acidithiobacillus thiooxidans ATCC 19377 chromosome, complete genome	3415726	2612433	2620405	3415726		uncultured_Caudovirales_phage(33.33%)	8	NA	NA
WP_031574247.1|2612433_2613714_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	59.3	2.7e-141
WP_081577199.1|2613710_2614556_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	45.2	7.9e-57
WP_153940842.1|2614552_2616184_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.3	2.5e-160
WP_010642205.1|2616336_2617377_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	42.9	1.1e-76
WP_081577197.1|2617408_2618080_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_153940843.1|2618161_2619469_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	59.7	2.1e-133
WP_081577195.1|2619561_2619927_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010640437.1|2619913_2620405_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	51.3	9.0e-37
