assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009662135.1_ASM966213v1	NZ_CP045784	Shigella dysenteriae strain CFSAN029786 chromosome, complete genome	1	1153279-1153394	1	CRISPRCasFinder	no		cas3,csa3,PrimPol,DinG,DEDDh,WYL,c2c9_V-U4,c2c8_V-U2,cas2	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PrimPol,DinG,DEDDh,WYL,c2c9_V-U4,c2c8_V-U2,cas2,RT	NA,NA	NA|361aa|up_9|NZ_CP045784.1_1141391_1142474_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP045784.1_1142575_1142707_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP045784.1_1142795_1144451_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP045784.1_1144614_1145598_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP045784.1_1145573_1147184_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP045784.1_1147167_1147866_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP045784.1_1147979_1148744_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP045784.1_1148829_1149708_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP045784.1_1150045_1151746_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP045784.1_1151756_1153259_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP045784.1_1153458_1154154_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP045784.1_1154228_1156580_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP045784.1_1156743_1159650_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP045784.1_1159661_1160321_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP045784.1_1160437_1161253_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP045784.1_1161507_1163862_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP045784.1_1163914_1165201_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP045784.1_1165200_1166190_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP045784.1_1166186_1167008_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP045784.1_1167010_1167388_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_009662135.1_ASM966213v1	NZ_CP045784	Shigella dysenteriae strain CFSAN029786 chromosome, complete genome	2	1235710-1235858	2	CRISPRCasFinder	no		cas3,csa3,PrimPol,DinG,DEDDh,WYL,c2c9_V-U4,c2c8_V-U2,cas2	Orphan	TGTAGGCATGATAAGACGCGACAAGCGTCGCATCAGGCATTGTGCGCC	48	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PrimPol,DinG,DEDDh,WYL,c2c9_V-U4,c2c8_V-U2,cas2,RT	NA|50aa|up_5|NZ_CP045784.1_1227112_1227262_+,NA	NA|461aa|up_9|NZ_CP045784.1_1222887_1224270_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|323aa|up_8|NZ_CP045784.1_1224318_1225287_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|215aa|up_7|NZ_CP045784.1_1225392_1226037_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_6|NZ_CP045784.1_1226064_1227081_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|50aa|up_5|NZ_CP045784.1_1227112_1227262_+	NA	NA|240aa|up_4|NZ_CP045784.1_1227536_1228256_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|up_3|NZ_CP045784.1_1228335_1229559_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|up_2|NZ_CP045784.1_1229610_1230933_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|up_1|NZ_CP045784.1_1231059_1231839_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|383aa|up_0|NZ_CP045784.1_1232320_1233468_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|261aa|down_0|NZ_CP045784.1_1235888_1236671_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_1|NZ_CP045784.1_1236667_1237741_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_2|NZ_CP045784.1_1237862_1238024_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|202aa|down_3|NZ_CP045784.1_1238150_1238756_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_4|NZ_CP045784.1_1239148_1240738_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|232aa|down_5|NZ_CP045784.1_1240810_1241506_-	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|149aa|down_6|NZ_CP045784.1_1241520_1241967_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|down_7|NZ_CP045784.1_1241935_1242349_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|344aa|down_8|NZ_CP045784.1_1242451_1243483_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|79aa|down_9|NZ_CP045784.1_1244111_1244348_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)
GCF_009662135.1_ASM966213v1	NZ_CP045784	Shigella dysenteriae strain CFSAN029786 chromosome, complete genome	3	4320107-4320230	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PrimPol,DinG,DEDDh,WYL,c2c9_V-U4,c2c8_V-U2,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PrimPol,DinG,DEDDh,WYL,c2c9_V-U4,c2c8_V-U2,cas2,RT	NA,NA|30aa|down_7|NZ_CP045784.1_4329126_4329216_+	NA|424aa|up_9|NZ_CP045784.1_4309534_4310806_+	PRK10948, PRK10948, Fe-S cluster assembly protein SufD	NA|407aa|up_8|NZ_CP045784.1_4310802_4312023_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_7|NZ_CP045784.1_4312035_4312452_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|335aa|up_6|NZ_CP045784.1_4312600_4313605_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_5|NZ_CP045784.1_4313668_4313905_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_4|NZ_CP045784.1_4314215_4315628_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|20aa|up_3|NZ_CP045784.1_4316185_4316245_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_2|NZ_CP045784.1_4317379_4318006_-	PRK09898, PRK09898, ferredoxin-like protein	NA|61aa|up_1|NZ_CP045784.1_4318461_4318644_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|102aa|up_0|NZ_CP045784.1_4319677_4319983_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP045784.1_4320544_4321801_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP045784.1_4321841_4323215_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP045784.1_4323429_4324071_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP045784.1_4324110_4325259_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP045784.1_4325549_4326761_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP045784.1_4326873_4327806_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP045784.1_4327802_4328828_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP045784.1_4329126_4329216_+	NA	NA|390aa|down_8|NZ_CP045784.1_4329381_4330551_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP045784.1_4330696_4331278_-	PRK10543, PRK10543, superoxide dismutase [Fe]
