assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	1	4996-5078	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|34aa|down_1|NZ_CP045866.1_6733_6835_+,NA|52aa|down_8|NZ_CP045866.1_14681_14837_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|326aa|up_3|NZ_CP045866.1_183_1161_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP045866.1_1153_2668_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP045866.1_2907_3966_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP045866.1_4304_4847_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP045866.1_5725_6643_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP045866.1_6733_6835_+	NA	NA|502aa|down_2|NZ_CP045866.1_6912_8418_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP045866.1_8758_9259_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP045866.1_9278_10145_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP045866.1_10945_11344_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP045866.1_11306_13412_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP045866.1_13529_14501_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP045866.1_14681_14837_+	NA	NA|324aa|down_9|NZ_CP045866.1_14875_15847_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2	45943-46021	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	45967-45997|45967-45997	NZ_CP045866.1_2264895-2264865|NZ_CP045866.1_2264840-2264810	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP045866.1_36819_36924_+,NA|36aa|up_5|NZ_CP045866.1_38356_38464_+,NA	NA|191aa|up_9|NZ_CP045866.1_33260_33833_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP045866.1_34246_36778_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP045866.1_36819_36924_+	NA	NA|370aa|up_6|NZ_CP045866.1_37092_38203_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP045866.1_38356_38464_+	NA	NA|280aa|up_4|NZ_CP045866.1_38611_39451_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP045866.1_39624_40275_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP045866.1_40271_40508_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP045866.1_40776_42762_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP045866.1_42769_45616_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP045866.1_46279_47212_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP045866.1_47217_48057_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP045866.1_48064_48550_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP045866.1_48557_49997_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP045866.1_50063_50999_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP045866.1_51752_52664_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP045866.1_52660_53656_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP045866.1_53766_54711_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP045866.1_55274_55862_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP045866.1_56104_57007_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	3	51386-51476	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	15	51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443|51419-51443	NZ_CP045866.1_578447-578423|NZ_CP045866.1_863111-863087|NZ_CP045866.1_2141619-2141595|NZ_CP045866.1_2141677-2141653|NZ_CP045866.1_2264811-2264787|NZ_CP045866.1_2264921-2264897|NZ_CP045866.1_2605882-2605858|NZ_CP045866.1_4037-4061|NZ_CP045866.1_109968-109992|NZ_CP045866.1_666978-667002|NZ_CP045866.1_848556-848580|NZ_CP045866.1_1176696-1176720|NZ_CP045866.1_2264866-2264842|NZ_CP045866.1_178490-178514|NZ_CP045866.1_885815-885839	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP045866.1_38611_39451_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP045866.1_39624_40275_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP045866.1_40271_40508_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP045866.1_40776_42762_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP045866.1_42769_45616_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP045866.1_46279_47212_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP045866.1_47217_48057_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP045866.1_48064_48550_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP045866.1_48557_49997_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP045866.1_50063_50999_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP045866.1_51752_52664_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP045866.1_52660_53656_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP045866.1_53766_54711_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP045866.1_55274_55862_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP045866.1_56104_57007_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP045866.1_57709_58339_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP045866.1_59151_60165_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP045866.1_60217_61228_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP045866.1_61366_62557_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP045866.1_62678_63440_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	4	109895-109976	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	109919-109952	NZ_CP045866.1_578555-578522	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP045866.1_108797_108911_+,NA	NA|206aa|up_9|NZ_CP045866.1_103651_104269_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP045866.1_104423_104918_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP045866.1_105316_105739_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP045866.1_105886_106603_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP045866.1_106685_107225_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP045866.1_107375_107696_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP045866.1_107839_108196_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP045866.1_108353_108734_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP045866.1_108797_108911_+	NA	NA|293aa|up_0|NZ_CP045866.1_108912_109791_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP045866.1_110587_110974_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP045866.1_110966_111263_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP045866.1_111512_112538_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP045866.1_112530_113226_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP045866.1_113243_114065_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP045866.1_114418_114613_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP045866.1_114846_115698_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP045866.1_116025_116787_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP045866.1_116884_118192_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP045866.1_118306_119548_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	5	848480-848564	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	848506-848538|848506-848538	NZ_CP045866.1_578555-578523|NZ_CP045866.1_2141727-2141695	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP045866.1_837689_838373_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP045866.1_838616_838793_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP045866.1_839085_840432_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP045866.1_840438_841191_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP045866.1_841192_842131_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP045866.1_842134_843274_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP045866.1_843409_845242_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP045866.1_845310_845937_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP045866.1_845968_846946_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP045866.1_847046_848171_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP045866.1_848736_850560_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP045866.1_850905_851157_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP045866.1_851201_852176_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP045866.1_852232_854380_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP045866.1_854438_854900_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP045866.1_854991_855678_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP045866.1_855717_856434_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP045866.1_856436_856790_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP045866.1_856790_857375_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP045866.1_857364_857934_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	6	885834-886030	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AATTTCTCTATGTTGGGGCCCC	22	1	5	885856-885898|885856-885898|885856-885898|885856-885898|885856-885898	NZ_CP045866.1_274476-274518|NZ_CP045866.1_370899-370857|NZ_CP045866.1_578523-578481|NZ_CP045866.1_666902-666944|NZ_CP045866.1_2339711-2339669	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP045866.1_889987_890134_-,NA|43aa|down_8|NZ_CP045866.1_893170_893299_-	NA|208aa|up_9|NZ_CP045866.1_874577_875201_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP045866.1_875200_876469_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP045866.1_876480_877404_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP045866.1_877406_878045_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP045866.1_878329_878638_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP045866.1_878652_879081_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP045866.1_879084_879345_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP045866.1_879407_882038_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP045866.1_882380_884858_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP045866.1_884859_885528_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP045866.1_886164_887283_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP045866.1_887283_888426_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP045866.1_888737_889751_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP045866.1_889987_890134_-	NA	NA|61aa|down_4|NZ_CP045866.1_890173_890356_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP045866.1_890455_890878_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP045866.1_890962_892237_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP045866.1_892397_893171_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP045866.1_893170_893299_-	NA	NA|589aa|down_9|NZ_CP045866.1_893631_895398_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	7	1278074-1278155	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	4	1278098-1278131|1278098-1278131|1278098-1278131|1278098-1278131	NZ_CP045866.1_45942-45975|NZ_CP045866.1_971476-971443|NZ_CP045866.1_582896-582929|NZ_CP045866.1_1965560-1965593	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|103aa|up_9|NZ_CP045866.1_1269259_1269568_-,NA|61aa|up_6|NZ_CP045866.1_1270861_1271044_+,NA|49aa|up_5|NZ_CP045866.1_1271079_1271226_+,NA|205aa|up_4|NZ_CP045866.1_1271222_1271837_-,NA	NA|103aa|up_9|NZ_CP045866.1_1269259_1269568_-	NA	NA|73aa|up_8|NZ_CP045866.1_1269582_1269801_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|240aa|up_7|NZ_CP045866.1_1269942_1270662_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|61aa|up_6|NZ_CP045866.1_1270861_1271044_+	NA	NA|49aa|up_5|NZ_CP045866.1_1271079_1271226_+	NA	NA|205aa|up_4|NZ_CP045866.1_1271222_1271837_-	NA	NA|346aa|up_3|NZ_CP045866.1_1271944_1272982_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP045866.1_1274100_1275117_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP045866.1_1275138_1276194_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP045866.1_1276629_1277853_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP045866.1_1278296_1279604_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP045866.1_1280143_1281760_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP045866.1_1281835_1282120_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP045866.1_1282294_1283038_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP045866.1_1283062_1284322_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP045866.1_1284518_1285145_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP045866.1_1285505_1286291_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP045866.1_1286890_1287025_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP045866.1_1287260_1287824_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP045866.1_1287826_1287970_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	8	1405812-1405892	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP045866.1_1400686_1400917_-,NA|364aa|up_0|NZ_CP045866.1_1404703_1405795_+,NA|35aa|down_0|NZ_CP045866.1_1406227_1406332_-,NA|53aa|down_1|NZ_CP045866.1_1407011_1407170_+	NA|237aa|up_9|NZ_CP045866.1_1396297_1397008_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP045866.1_1397128_1397572_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP045866.1_1397771_1398185_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP045866.1_1398641_1400015_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP045866.1_1400686_1400917_-	NA	NA|313aa|up_4|NZ_CP045866.1_1400947_1401886_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP045866.1_1402321_1402987_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP045866.1_1403138_1403459_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP045866.1_1403460_1404438_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP045866.1_1404703_1405795_+	NA	NA|35aa|down_0|NZ_CP045866.1_1406227_1406332_-	NA	NA|53aa|down_1|NZ_CP045866.1_1407011_1407170_+	NA	NA|286aa|down_2|NZ_CP045866.1_1407827_1408685_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP045866.1_1408752_1409535_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP045866.1_1409766_1411572_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP045866.1_1412252_1413791_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP045866.1_1413825_1415958_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP045866.1_1415969_1416404_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP045866.1_1416403_1417510_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP045866.1_1417828_1425274_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	9	1418133-1418218	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP045866.1_1404703_1405795_+,NA|35aa|up_8|NZ_CP045866.1_1406227_1406332_-,NA|53aa|up_7|NZ_CP045866.1_1407011_1407170_+,NA	NA|364aa|up_9|NZ_CP045866.1_1404703_1405795_+	NA	NA|35aa|up_8|NZ_CP045866.1_1406227_1406332_-	NA	NA|53aa|up_7|NZ_CP045866.1_1407011_1407170_+	NA	NA|286aa|up_6|NZ_CP045866.1_1407827_1408685_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP045866.1_1408752_1409535_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP045866.1_1409766_1411572_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP045866.1_1412252_1413791_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP045866.1_1413825_1415958_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP045866.1_1415969_1416404_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP045866.1_1416403_1417510_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP045866.1_1425551_1426907_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP045866.1_1426933_1427866_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP045866.1_1427867_1428677_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP045866.1_1428865_1429774_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP045866.1_1436014_1437079_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP045866.1_1437226_1438669_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP045866.1_1438991_1439465_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP045866.1_1439563_1440907_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP045866.1_1441083_1441767_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP045866.1_1441785_1442973_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	10	1526176-1526256	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231|1526201-1526231	NZ_CP045866.1_58554-58584|NZ_CP045866.1_58610-58640|NZ_CP045866.1_58666-58696|NZ_CP045866.1_110231-110261|NZ_CP045866.1_274488-274518|NZ_CP045866.1_666914-666944|NZ_CP045866.1_667030-667060|NZ_CP045866.1_1175348-1175378|NZ_CP045866.1_1515400-1515430|NZ_CP045866.1_1690884-1690914|NZ_CP045866.1_2043242-2043272|NZ_CP045866.1_370887-370857|NZ_CP045866.1_578511-578481|NZ_CP045866.1_863174-863144|NZ_CP045866.1_2339699-2339669|NZ_CP045866.1_2605946-2605916	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP045866.1_1516709_1516874_+,NA|106aa|up_8|NZ_CP045866.1_1517118_1517436_+,NA|84aa|up_5|NZ_CP045866.1_1522557_1522809_+,NA|62aa|up_0|NZ_CP045866.1_1525948_1526134_+,NA	NA|55aa|up_9|NZ_CP045866.1_1516709_1516874_+	NA	NA|106aa|up_8|NZ_CP045866.1_1517118_1517436_+	NA	NA|1056aa|up_7|NZ_CP045866.1_1517619_1520787_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP045866.1_1520903_1522169_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP045866.1_1522557_1522809_+	NA	NA|255aa|up_4|NZ_CP045866.1_1522800_1523565_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP045866.1_1523726_1524167_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP045866.1_1524159_1525371_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP045866.1_1525472_1525823_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP045866.1_1525948_1526134_+	NA	NA|341aa|down_0|NZ_CP045866.1_1526399_1527422_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP045866.1_1527441_1528041_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP045866.1_1528047_1528281_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP045866.1_1528286_1528733_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP045866.1_1528746_1529232_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP045866.1_1529228_1530488_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP045866.1_1530550_1531045_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP045866.1_1531046_1531553_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP045866.1_1531583_1532588_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP045866.1_1532757_1533363_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_009650155.1_ASM965015v1	NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	11	2378407-2378508	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP045866.1_2369966_2370176_-,NA|128aa|up_6|NZ_CP045866.1_2371000_2371384_-,NA|33aa|up_0|NZ_CP045866.1_2377631_2377730_+,NA|221aa|down_1|NZ_CP045866.1_2379598_2380261_-,NA|179aa|down_7|NZ_CP045866.1_2386352_2386889_-	NA|84aa|up_9|NZ_CP045866.1_2369676_2369928_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP045866.1_2369966_2370176_-	NA	NA|194aa|up_7|NZ_CP045866.1_2370353_2370935_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP045866.1_2371000_2371384_-	NA	NA|209aa|up_5|NZ_CP045866.1_2371653_2372280_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP045866.1_2372723_2374247_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP045866.1_2374262_2374832_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP045866.1_2375323_2376079_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP045866.1_2376158_2377547_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP045866.1_2377631_2377730_+	NA	NA|319aa|down_0|NZ_CP045866.1_2378524_2379481_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP045866.1_2379598_2380261_-	NA	NA|136aa|down_2|NZ_CP045866.1_2380403_2380811_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP045866.1_2381323_2381902_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP045866.1_2381901_2383170_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP045866.1_2383207_2384674_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP045866.1_2384698_2386240_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP045866.1_2386352_2386889_-	NA	NA|235aa|down_8|NZ_CP045866.1_2387280_2387985_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP045866.1_2388383_2388656_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
