The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2727720	2907	17548	2727720		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|2907_3966_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|4304_4847_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|5725_6643_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|6733_6835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|6912_8418_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|8758_9259_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|9278_10145_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|10945_11344_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|11306_13412_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|13529_14501_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|14681_14837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|14875_15847_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|15833_16790_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|16786_17548_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 2
NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2727720	68380	81883	2727720	terminase,coat,integrase	Staphylococcus_phage(85.71%)	19	69752:69767	77150:77165
WP_001050048.1|68380_70753_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
69752:69767	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
WP_001085183.1|70774_71239_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_000121223.1|71801_72908_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
WP_072474260.1|72913_73561_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|73718_73925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|73960_74188_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784892.1|74184_74358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|74324_74528_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403833.1|74529_74913_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	3.3e-63
WP_001103972.1|74913_75237_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	93.3	2.6e-40
WP_000344760.1|75281_76898_+	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	78.1	1.8e-246
WP_000148368.1|77073_77877_+	DNA primase	NA	Q4ZE69	Staphylococcus_phage	97.0	3.1e-151
77150:77165	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
WP_001149387.1|77863_78136_+	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_001019773.1|78137_78779_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	2.1e-110
WP_001190606.1|79228_79570_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
WP_000448775.1|80176_80395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001611935.1|80445_80973_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.6	3.2e-88
WP_001662732.1|80975_81317_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.3	4.2e-57
WP_049311899.1|81313_81883_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	5.1e-100
>prophage 3
NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2727720	275998	284471	2727720		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|275998_276481_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|276467_277592_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|277595_278300_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|278299_278563_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_099112223.1|278564_279236_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|279228_281418_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|281396_282881_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|282873_283902_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|283904_284471_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2727720	901089	910132	2727720	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|901089_901608_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|901629_903903_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_099112236.1|904105_906385_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	36.2	1.8e-31
WP_001160682.1|906659_906920_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|906938_908078_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|908100_909126_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|909127_910132_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 5
NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2727720	1033564	1095760	2727720	tRNA,protease	Staphylococcus_phage(95.65%)	59	NA	NA
WP_001050566.1|1033564_1040125_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1040450_1040762_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001108730.1|1040783_1043198_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1043488_1044670_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1044779_1045733_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1045729_1046293_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1046415_1046817_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1047388_1048216_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1048218_1048338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1048449_1049451_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1049572_1050037_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1050049_1051231_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1051241_1051874_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000384185.1|1051880_1052912_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1053404_1054907_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1055429_1055744_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1055743_1057036_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1057122_1057977_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1058252_1058477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1058675_1059146_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1059258_1059702_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1059688_1060132_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1060427_1061063_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1061502_1062216_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1062475_1062778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1063033_1063399_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1063395_1063749_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1065746_1066580_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1066791_1067700_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1067821_1069018_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_099112237.1|1069389_1070982_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001822900.1|1071359_1072106_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1072110_1072584_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1072649_1072907_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1072903_1073905_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1073909_1075388_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1075546_1076002_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1076304_1076955_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1077035_1078031_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1078105_1078732_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1078772_1079114_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1079214_1079787_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1081141_1081237_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1081359_1081461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1082536_1083766_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001793440.1|1083758_1085498_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|1085478_1085613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1085675_1086395_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1086496_1086604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1086552_1087272_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1087392_1088112_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1088169_1088892_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1089016_1089724_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1090687_1091269_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_000469591.1|1091741_1091960_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_000550252.1|1092215_1092689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|1092693_1093485_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1093854_1094838_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000878802.1|1094839_1095760_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	2.3e-174
>prophage 6
NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2727720	1188134	1283038	2727720	tRNA,integrase,capsid,holin,head,protease,portal,tail,terminase	Staphylococcus_phage(87.34%)	115	1186030:1186054	1285324:1285348
1186030:1186054	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000027917.1|1188134_1189592_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1189593_1189896_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1190262_1191801_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|1191889_1193089_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|1193101_1195105_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|1195108_1197301_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|1197297_1197990_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1198161_1198464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1198572_1199868_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|1200727_1201894_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1201924_1202251_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1202542_1202716_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1202696_1203299_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1203569_1204391_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|1204383_1205853_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|1206036_1207113_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1207132_1207927_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1207998_1208106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1208116_1209679_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_099112240.1|1209883_1210981_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.3e-46
WP_000149686.1|1211349_1211910_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1211962_1212892_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1213084_1213258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1213309_1214689_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|1214808_1215837_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1216106_1216508_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1217080_1217254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|1217704_1218745_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1218801_1219644_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1219640_1220198_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1220257_1220782_-	membrane protein	NA	NA	NA	NA	NA
WP_049311943.1|1220902_1221466_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1221531_1222272_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|1222271_1223144_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|1223140_1223821_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|1223821_1224718_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|1224714_1225095_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1225352_1225529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1225771_1225870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1226069_1227356_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_078101919.1|1227634_1227943_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001558588.1|1227935_1229369_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669791.1|1230326_1230506_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|1230816_1231077_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1231129_1231480_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001110820.1|1231990_1232287_-	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
WP_000920038.1|1232976_1233468_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|1233658_1234414_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1234425_1234680_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1234731_1234839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072353918.1|1234891_1235068_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_000340977.1|1235210_1235585_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|1235640_1235928_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|1235973_1236126_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582132.1|1236118_1239901_-	hypothetical protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.9	0.0e+00
WP_001154317.1|1239916_1241407_-|tail	phage tail protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_031866874.1|1241406_1246056_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	99.4	0.0e+00
WP_000571956.1|1246111_1246234_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_000442601.1|1246293_1246740_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|1246804_1247758_-|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611449.1|1247758_1248139_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	99.2	1.3e-67
WP_000501244.1|1248135_1248513_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|1248512_1248848_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177489.1|1248834_1249167_-|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	99.1	8.2e-58
WP_001252099.1|1249175_1249334_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849957.1|1249369_1250617_-|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	97.6	5.9e-210
WP_000032523.1|1250704_1251289_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	99.5	2.9e-106
WP_072353924.1|1251281_1252472_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	99.5	2.0e-223
WP_000644967.1|1252537_1252777_-	hypothetical protein	NA	A7TWC1	Staphylococcus_phage	98.7	2.0e-34
WP_000133304.1|1252751_1254446_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|1254448_1254916_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|1255043_1255388_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|1255403_1255856_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282758.1|1255970_1256441_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	98.5	5.0e-69
WP_000265041.1|1256463_1256664_-	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001005262.1|1256663_1257314_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000595305.1|1257472_1257622_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	8.2e-18
WP_000592201.1|1257618_1258005_-	hypothetical protein	NA	A0A0N9BB01	Staphylococcus_phage	96.9	3.7e-62
WP_000195803.1|1258001_1258208_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|1258204_1258450_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001061838.1|1258486_1259020_-	hypothetical protein	NA	U5U798	Staphylococcus_phage	97.7	7.4e-93
WP_031866878.1|1259196_1259454_-	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	92.9	7.7e-40
WP_001065046.1|1259642_1259894_-	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	96.4	4.1e-38
WP_000131381.1|1259908_1260151_-	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_000101270.1|1260154_1260523_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000401965.1|1260535_1260991_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1P8L6F2	Staphylococcus_phage	99.3	5.9e-83
WP_000338527.1|1260999_1261218_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	98.6	4.0e-37
WP_099112241.1|1261224_1262085_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	91.9	1.6e-134
WP_000934762.1|1262114_1262585_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	98.7	6.3e-80
WP_072353921.1|1262585_1263203_-	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	98.1	1.3e-85
WP_000138475.1|1263283_1264204_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_031866880.1|1264205_1266149_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.2	0.0e+00
WP_001205732.1|1266157_1266421_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291489.1|1266429_1266690_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|1266782_1266944_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120935.1|1266940_1267261_-	DUF771 domain-containing protein	NA	Q4ZDR7	Staphylococcus_virus	100.0	1.5e-56
WP_000801108.1|1267319_1267547_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|1267548_1267740_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|1267789_1268146_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148852.1|1268140_1268335_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001148641.1|1268350_1269103_-	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	99.6	7.4e-139
WP_001153965.1|1269259_1269568_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001198673.1|1269582_1269801_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000358221.1|1269942_1270662_+	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	99.2	1.9e-131
WP_000705240.1|1270861_1271044_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1271079_1271226_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191456.1|1271222_1271837_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	99.5	4.3e-105
WP_000857176.1|1271944_1272982_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595392.1|1274100_1275117_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|1275138_1276194_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|1276629_1277853_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|1278296_1279604_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|1280143_1281760_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|1281835_1282120_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|1282294_1283038_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
1285324:1285348	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 7
NZ_CP045866	Staphylococcus aureus strain CFSAN007894 chromosome, complete genome	2727720	2710835	2718656	2727720		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|2710835_2711891_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2711890_2712577_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2712551_2713025_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|2713367_2713808_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|2714087_2714672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|2714770_2715484_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|2715487_2715907_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_049311776.1|2715908_2716577_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	6.2e-65
WP_000604514.1|2716927_2717521_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|2717504_2718656_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
