assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009649915.1_ASM964991v1	NZ_CP045845	Kluyvera intermedia strain N2-1 chromosome, complete genome	1	875939-876072	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	Orphan	TCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACA	41	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	NA,NA|64aa|down_3|NZ_CP045845.1_879694_879886_-	NA|449aa|up_9|NZ_CP045845.1_864482_865829_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|277aa|up_8|NZ_CP045845.1_865838_866669_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_7|NZ_CP045845.1_866722_867694_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|257aa|up_6|NZ_CP045845.1_867693_868464_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|555aa|up_5|NZ_CP045845.1_868657_870322_+	PRK05257, PRK05257, malate:quinone oxidoreductase; Validated	NA|410aa|up_4|NZ_CP045845.1_870612_871842_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|152aa|up_3|NZ_CP045845.1_871959_872415_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|290aa|up_2|NZ_CP045845.1_872509_873379_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|395aa|up_1|NZ_CP045845.1_873490_874675_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|239aa|up_0|NZ_CP045845.1_875146_875863_+	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM)	NA|392aa|down_0|NZ_CP045845.1_876234_877410_-	pfam14583, Pectate_lyase22, Oligogalacturonate lyase	NA|279aa|down_1|NZ_CP045845.1_877879_878716_+	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional	NA|254aa|down_2|NZ_CP045845.1_878778_879540_+	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|64aa|down_3|NZ_CP045845.1_879694_879886_-	NA	NA|473aa|down_4|NZ_CP045845.1_879928_881347_+	TIGR00879, Membrane_transporter, MFS transporter, sugar porter (SP) family	NA|376aa|down_5|NZ_CP045845.1_881716_882844_-	pfam14583, Pectate_lyase22, Oligogalacturonate lyase	NA|429aa|down_6|NZ_CP045845.1_882913_884200_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|376aa|down_7|NZ_CP045845.1_884214_885342_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|301aa|down_8|NZ_CP045845.1_885354_886257_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|down_9|NZ_CP045845.1_886249_887140_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
GCF_009649915.1_ASM964991v1	NZ_CP045845	Kluyvera intermedia strain N2-1 chromosome, complete genome	2	1273098-1273237	2	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	Orphan	GTAGCCCGGCCAAGCGCAGCACCGCCGGGAATGGGCTCCGTGC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	NA,NA|20aa|down_6|NZ_CP045845.1_1279166_1279226_+	NA|439aa|up_9|NZ_CP045845.1_1263488_1264805_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|289aa|up_8|NZ_CP045845.1_1264969_1265836_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|120aa|up_7|NZ_CP045845.1_1265832_1266192_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|488aa|up_6|NZ_CP045845.1_1266203_1267667_-	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|358aa|up_5|NZ_CP045845.1_1267882_1268956_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|157aa|up_4|NZ_CP045845.1_1269096_1269567_-	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed	NA|191aa|up_3|NZ_CP045845.1_1269566_1270139_-	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional	NA|293aa|up_2|NZ_CP045845.1_1270293_1271172_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|345aa|up_1|NZ_CP045845.1_1271188_1272223_+	PRK11679, PRK11679, outer membrane protein assembly factor BamC	NA|238aa|up_0|NZ_CP045845.1_1272331_1273045_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|290aa|down_0|NZ_CP045845.1_1273323_1274193_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|671aa|down_1|NZ_CP045845.1_1274197_1276210_+	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	NA|233aa|down_2|NZ_CP045845.1_1276286_1276985_+	PRK11460, PRK11460, putative hydrolase; Provisional	NA|67aa|down_3|NZ_CP045845.1_1277035_1277236_-	PRK13664, PRK13664, hypothetical protein; Provisional	NA|376aa|down_4|NZ_CP045845.1_1277266_1278394_-	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed	NA|120aa|down_5|NZ_CP045845.1_1278449_1278809_-	PRK10853, PRK10853, putative reductase; Provisional	NA|20aa|down_6|NZ_CP045845.1_1279166_1279226_+	NA	NA|1038aa|down_7|NZ_CP045845.1_1279352_1282466_-	PRK10555, PRK10555, multidrug efflux RND transporter permease AcrD	NA|661aa|down_8|NZ_CP045845.1_1282792_1284775_+	PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed	NA|192aa|down_9|NZ_CP045845.1_1284833_1285409_+	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional
GCF_009649915.1_ASM964991v1	NZ_CP045845	Kluyvera intermedia strain N2-1 chromosome, complete genome	3	1393078-1393163	3	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	Orphan	GATTTATCAACGGCTCTCTACGGT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	NA,NA	NA|406aa|up_9|NZ_CP045845.1_1382385_1383603_+	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|392aa|up_8|NZ_CP045845.1_1383811_1384987_+	PRK12382, PRK12382, putative transporter; Provisional	NA|337aa|up_7|NZ_CP045845.1_1385076_1386087_-	PRK10715, flk, flagella biosynthesis regulator Flk	NA|376aa|up_6|NZ_CP045845.1_1386195_1387323_+	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional	NA|338aa|up_5|NZ_CP045845.1_1387386_1388400_+	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional	NA|271aa|up_4|NZ_CP045845.1_1388399_1389212_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|220aa|up_3|NZ_CP045845.1_1389237_1389897_+	PRK10847, PRK10847, DedA family protein	NA|334aa|up_2|NZ_CP045845.1_1390006_1391008_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|423aa|up_1|NZ_CP045845.1_1391080_1392349_+	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|225aa|up_0|NZ_CP045845.1_1392338_1393013_+	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|163aa|down_0|NZ_CP045845.1_1393360_1393849_+	PRK10845, PRK10845, colicin V production protein; Provisional	NA|506aa|down_1|NZ_CP045845.1_1393882_1395400_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|656aa|down_2|NZ_CP045845.1_1395498_1397466_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|468aa|down_3|NZ_CP045845.1_1397473_1398877_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|338aa|down_4|NZ_CP045845.1_1399224_1400238_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|190aa|down_5|NZ_CP045845.1_1400279_1400849_+	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|261aa|down_6|NZ_CP045845.1_1401141_1401924_+	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT	NA|261aa|down_7|NZ_CP045845.1_1402146_1402929_+	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional	NA|229aa|down_8|NZ_CP045845.1_1402992_1403679_+	PRK15135, PRK15135, histidine ABC transporter permease HisQ	NA|239aa|down_9|NZ_CP045845.1_1403675_1404392_+	PRK15069, PRK15069, histidine ABC transporter permease HisM
GCF_009649915.1_ASM964991v1	NZ_CP045845	Kluyvera intermedia strain N2-1 chromosome, complete genome	4	3589549-3589653	4	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	Orphan	ACTATCCCGCAATCAGCATAAATG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	NA,NA|71aa|down_8|NZ_CP045845.1_3598683_3598896_+	NA|400aa|up_9|NZ_CP045845.1_3575407_3576607_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|367aa|up_8|NZ_CP045845.1_3576883_3577984_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|65aa|up_7|NZ_CP045845.1_3578013_3578208_-	pfam10953, DUF2754, Protein of unknown function (DUF2754)	NA|101aa|up_6|NZ_CP045845.1_3578430_3578733_+	pfam10954, DUF2755, Protein of unknown function (DUF2755)	NA|369aa|up_5|NZ_CP045845.1_3578729_3579836_-	pfam07759, DUF1615, Protein of unknown function (DUF1615)	NA|408aa|up_4|NZ_CP045845.1_3579868_3581092_-	PRK11098, PRK11098, peptide antibiotic transporter SbmA	NA|386aa|up_3|NZ_CP045845.1_3581425_3582583_+	PRK10662, PRK10662, beta-lactam binding protein AmpH; Provisional	NA|209aa|up_2|NZ_CP045845.1_3582579_3583206_-	PRK11832, PRK11832, hydrogen peroxide resistance inhibitor IprA	NA|946aa|up_1|NZ_CP045845.1_3583299_3586137_-	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|325aa|up_0|NZ_CP045845.1_3586670_3587645_+	PRK09283, PRK09283, porphobilinogen synthase	NA|284aa|down_0|NZ_CP045845.1_3589713_3590565_-	PRK09553, tauD, taurine dioxygenase; Reviewed	NA|276aa|down_1|NZ_CP045845.1_3590561_3591389_-	PRK10160, PRK10160, taurine ABC transporter permease TauC	NA|256aa|down_2|NZ_CP045845.1_3591385_3592153_-	PRK11248, tauB, taurine ABC transporter ATP-binding subunit	NA|322aa|down_3|NZ_CP045845.1_3592163_3593129_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|311aa|down_4|NZ_CP045845.1_3593360_3594293_-	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|471aa|down_5|NZ_CP045845.1_3594279_3595692_-	PRK11387, PRK11387, S-methylmethionine permease	NA|374aa|down_6|NZ_CP045845.1_3595971_3597093_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|435aa|down_7|NZ_CP045845.1_3597224_3598529_-	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|71aa|down_8|NZ_CP045845.1_3598683_3598896_+	NA	NA|172aa|down_9|NZ_CP045845.1_3599135_3599651_-	PRK15486, hpaC, 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
GCF_009649915.1_ASM964991v1	NZ_CP045845	Kluyvera intermedia strain N2-1 chromosome, complete genome	5	3958801-3958943	5	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	Orphan	CATCATGAGCGCCCCCTGTAGCCCGGGCAAGGCGTATACGCCGCCCCCGGGGA	53	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	NA|476aa|up_6|NZ_CP045845.1_3950974_3952402_+,NA|23aa|down_4|NZ_CP045845.1_3964257_3964326_-	NA|135aa|up_9|NZ_CP045845.1_3948984_3949389_+	PRK10154, PRK10154, DUF2541 family protein	NA|242aa|up_8|NZ_CP045845.1_3949417_3950143_+	PRK10236, PRK10236, acidic protein MsyB	NA|189aa|up_7|NZ_CP045845.1_3950272_3950839_+	PRK10659, PRK10659, acetate uptake transporter	NA|476aa|up_6|NZ_CP045845.1_3950974_3952402_+	NA	NA|436aa|up_5|NZ_CP045845.1_3952455_3953763_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|196aa|up_4|NZ_CP045845.1_3953887_3954475_-	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional	NA|231aa|up_3|NZ_CP045845.1_3954521_3955214_+	PRK09857, PRK09857, recombination-promoting nuclease RpnA	NA|318aa|up_2|NZ_CP045845.1_3955271_3956225_-	PRK05269, PRK05269, transaldolase B; Provisional	NA|477aa|up_1|NZ_CP045845.1_3956477_3957908_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|258aa|up_0|NZ_CP045845.1_3957974_3958748_+	PRK02101, PRK02101, peroxide stress protein YaaA	NA|109aa|down_0|NZ_CP045845.1_3958970_3959297_-	pfam10697, DUF2502, Protein of unknown function (DUF2502)	NA|429aa|down_1|NZ_CP045845.1_3959491_3960778_-	PRK09225, PRK09225, threonine synthase; Validated	NA|310aa|down_2|NZ_CP045845.1_3960781_3961711_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|821aa|down_3|NZ_CP045845.1_3961712_3964175_-	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional	NA|23aa|down_4|NZ_CP045845.1_3964257_3964326_-	NA	NA|229aa|down_5|NZ_CP045845.1_3964535_3965222_-	PRK10433, PRK10433, putative RNA methyltransferase; Provisional	NA|239aa|down_6|NZ_CP045845.1_3965860_3966577_+	PRK11173, PRK11173, two-component response regulator; Provisional	NA|164aa|down_7|NZ_CP045845.1_3966615_3967107_-	PRK10756, PRK10756, protein CreA	NA|290aa|down_8|NZ_CP045845.1_3967318_3968188_+	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|216aa|down_9|NZ_CP045845.1_3968184_3968832_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB
GCF_009649915.1_ASM964991v1	NZ_CP045845	Kluyvera intermedia strain N2-1 chromosome, complete genome	6	4150528-4150635	6	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	Orphan	TGACGGTCTGGTTTTCTCCCTCGCCCCTCTGGGGAGAGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,DinG,csa3,cas14j	NA,NA	NA|259aa|up_9|NZ_CP045845.1_4142516_4143293_-	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913	NA|100aa|up_8|NZ_CP045845.1_4143314_4143614_-	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912	NA|121aa|up_7|NZ_CP045845.1_4143616_4143979_-	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911	NA|113aa|up_6|NZ_CP045845.1_4143989_4144328_-	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910	NA|129aa|up_5|NZ_CP045845.1_4144615_4145002_-	PRK15058, PRK15058, cytochrome b562; Provisional	NA|447aa|up_4|NZ_CP045845.1_4145063_4146404_-	PRK11040, PRK11040, peptidase PmbA; Provisional	NA|184aa|up_3|NZ_CP045845.1_4146510_4147062_+	COG3028, COG3028, Uncharacterized protein conserved in bacteria [Function unknown]	NA|174aa|up_2|NZ_CP045845.1_4147151_4147673_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|456aa|up_1|NZ_CP045845.1_4147899_4149267_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|333aa|up_0|NZ_CP045845.1_4149443_4150442_+	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|521aa|down_0|NZ_CP045845.1_4150657_4152220_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|334aa|down_1|NZ_CP045845.1_4152305_4153307_-	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|342aa|down_2|NZ_CP045845.1_4153293_4154319_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|501aa|down_3|NZ_CP045845.1_4154329_4155832_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|319aa|down_4|NZ_CP045845.1_4155956_4156913_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|176aa|down_5|NZ_CP045845.1_4157315_4157843_+	PRK01250, PRK01250, inorganic diphosphatase	NA|115aa|down_6|NZ_CP045845.1_4158008_4158353_-	COG2105, COG2105, Uncharacterized conserved protein [Function unknown]	NA|1259aa|down_7|NZ_CP045845.1_4158355_4162132_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|down_8|NZ_CP045845.1_4162128_4163862_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|215aa|down_9|NZ_CP045845.1_4164131_4164776_+	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA
