assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009648815.1_ASM964881v1	NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	1	630305-631554	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,GGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,28	4	4	630640-630671|631494-631525|630641-630673|631495-631527	NZ_CP045761.1_1020118-1020149|NZ_CP045761.1_4009147-4009116|NZ_CP045761.1_1020118-1020150|NZ_CP045761.1_4009147-4009115	I-E:I-E:I-E	20,20,20	20	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA|105aa|down_6|NZ_CP045761.1_640391_640706_-,NA|109aa|down_7|NZ_CP045761.1_640811_641138_-,NA|61aa|down_9|NZ_CP045761.1_641960_642143_-	NA|254aa|up_9|NZ_CP045761.1_622170_622932_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP045761.1_622912_623962_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP045761.1_623958_624438_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP045761.1_624437_625148_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP045761.1_625166_625478_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP045761.1_625668_625992_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP045761.1_626042_626648_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP045761.1_626634_628074_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP045761.1_628083_628992_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP045761.1_629243_630290_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|318aa|down_0|NZ_CP045761.1_633475_634429_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_1|NZ_CP045761.1_634518_635253_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_2|NZ_CP045761.1_635337_637050_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_3|NZ_CP045761.1_637049_638849_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_4|NZ_CP045761.1_639151_639517_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_5|NZ_CP045761.1_639594_640266_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|105aa|down_6|NZ_CP045761.1_640391_640706_-	NA	NA|109aa|down_7|NZ_CP045761.1_640811_641138_-	NA	NA|242aa|down_8|NZ_CP045761.1_641200_641926_-	pfam13988, DUF4225, Protein of unknown function (DUF4225)	NA|61aa|down_9|NZ_CP045761.1_641960_642143_-	NA
GCF_009648815.1_ASM964881v1	NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	2	3457453-3458077	2	CRT	no		cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4	Orphan	TAACCNNCTGACCAGCCTGCCGGCG	25	2	5	3457478-3457512|3457478-3457512|3457538-3457572|3457538-3457572|3457538-3457572	NZ_CP045761.1_3461603-3461637|NZ_CP045761.1_4197850-4197816|NZ_CP045761.1_4201903-4201869|NZ_CP045761.1_4201963-4201929|NZ_CP045761.1_4202023-4201989	NA	10	10	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|224aa|up_9|NZ_CP045761.1_3446316_3446988_-	PRK10816, PRK10816, two-component system response regulator PhoP	NA|457aa|up_8|NZ_CP045761.1_3447114_3448485_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|214aa|up_7|NZ_CP045761.1_3448488_3449130_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|369aa|up_6|NZ_CP045761.1_3449214_3450321_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|up_5|NZ_CP045761.1_3450374_3450836_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|110aa|up_4|NZ_CP045761.1_3450847_3451177_-	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]	NA|222aa|up_3|NZ_CP045761.1_3451173_3451839_-	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE	NA|417aa|up_2|NZ_CP045761.1_3452010_3453261_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|378aa|up_1|NZ_CP045761.1_3453383_3454517_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|183aa|up_0|NZ_CP045761.1_3455817_3456366_+	pfam10386, DUF2441, Protein of unknown function (DUF2441)	NA|735aa|down_0|NZ_CP045761.1_3460927_3463132_+	PRK15387, PRK15387, type III secretion system effector E3 ubiquitin transferase SspH2	NA|1046aa|down_1|NZ_CP045761.1_3464201_3467339_-	cd10522, SET_LegAS4-like, SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins	NA|316aa|down_2|NZ_CP045761.1_3467537_3468485_-	PRK10993, PRK10993, omptin family outer membrane protease	NA|97aa|down_3|NZ_CP045761.1_3468931_3469222_-	pfam06291, Lambda_Bor, Bor protein	NA|134aa|down_4|NZ_CP045761.1_3469752_3470154_-	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain	NA|757aa|down_5|NZ_CP045761.1_3470574_3472845_-	cd10522, SET_LegAS4-like, SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins	NA|1385aa|down_6|NZ_CP045761.1_3473336_3477491_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|80aa|down_7|NZ_CP045761.1_3477586_3477826_-	pfam06183, DinI, DinI-like family	NA|174aa|down_8|NZ_CP045761.1_3478033_3478555_-	cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication	NA|71aa|down_9|NZ_CP045761.1_3479102_3479315_-	PRK15463, PRK15463, cold shock-like protein CspF; Provisional
GCF_009648815.1_ASM964881v1	NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	3	3675949-3676094	2	CRISPRCasFinder	no	DEDDh	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4	Unclear	GGTTCGCTTATGGCCTGCTGCTCCTGCTTGCGGGCTTTGGCGCGGGCGATAGC	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|110aa|up_9|NZ_CP045761.1_3666575_3666905_+	PRK11372, PRK11372, C-type lysozyme inhibitor	NA|219aa|up_8|NZ_CP045761.1_3666963_3667620_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|425aa|up_7|NZ_CP045761.1_3667746_3669021_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|287aa|up_6|NZ_CP045761.1_3669080_3669941_+	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|202aa|up_5|NZ_CP045761.1_3669999_3670605_-	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|502aa|up_4|NZ_CP045761.1_3670709_3672215_-	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|212aa|up_3|NZ_CP045761.1_3672835_3673471_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|231aa|up_2|NZ_CP045761.1_3673470_3674163_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|207aa|up_1|NZ_CP045761.1_3674165_3674786_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|353aa|up_0|NZ_CP045761.1_3674789_3675848_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|193aa|down_0|NZ_CP045761.1_3677850_3678429_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|194aa|down_1|NZ_CP045761.1_3678428_3679010_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|147aa|down_2|NZ_CP045761.1_3679086_3679527_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|72aa|down_3|NZ_CP045761.1_3679615_3679831_-	PRK10391, PRK10391, transcription modulator YdgT	NA|42aa|down_4|NZ_CP045761.1_3680127_3680253_-	NF033231, small_Blr, division septum protein Blr	NA|347aa|down_5|NZ_CP045761.1_3680460_3681501_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|334aa|down_6|NZ_CP045761.1_3681575_3682577_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|391aa|down_7|NZ_CP045761.1_3682796_3683969_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|531aa|down_8|NZ_CP045761.1_3683978_3685571_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|343aa|down_9|NZ_CP045761.1_3685743_3686772_+	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional
