The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	4576555	349753	473335	4576555	transposase,plate,head,portal,holin,tail,integrase,terminase,tRNA,capsid	Cronobacter_phage(44.44%)	110	466662:466678	478115:478131
WP_001134569.1|349753_350305_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_000253558.1|350329_350965_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_002954249.1|350968_352333_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002954248.1|352343_353237_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_002954247.1|353352_354207_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023186140.1|354262_354523_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	6.5e-18
WP_000986043.1|354657_355038_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_002954244.1|355037_355769_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_002954243.1|355780_356509_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000102226.1|356520_357426_-	GTPase Era	NA	NA	NA	NA	NA
WP_001068341.1|357422_358103_-	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000002558.1|358376_359351_-	signal peptidase I	NA	NA	NA	NA	NA
WP_000790154.1|359367_361167_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_002954242.1|361418_361898_-	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
WP_000812027.1|361894_362851_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
WP_001168376.1|362850_363501_-	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
WP_000003307.1|363532_364108_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
WP_125873061.1|364104_364269_-	rpoE leader peptide RseD	NA	NA	NA	NA	NA
WP_000989166.1|364532_366155_+	L-aspartate oxidase	NA	NA	NA	NA	NA
WP_000083350.1|366139_366877_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219178.1|367006_368341_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.2e-43
WP_000627811.1|368456_368840_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_002954241.1|369158_369848_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	2.7e-55
WP_002954240.1|369962_371000_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_002954239.1|371193_371613_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.8	3.0e-17
WP_002954238.1|371685_372384_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_002954237.1|372420_375081_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949281.1|375195_376551_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_002954236.1|376595_376919_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_002954235.1|376915_378217_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.3	1.8e-44
WP_002954234.1|378320_378776_-	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	6.6e-34
WP_002954306.1|384950_387524_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.6	5.3e-128
WP_002954305.1|387653_388385_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_024139406.1|388381_389362_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197658.1|389493_390231_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|390502_390841_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_039511383.1|390998_391385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024139405.1|392938_394639_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.1	2.9e-223
WP_000200789.1|394641_395187_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
WP_002954300.1|395158_395884_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	8.6e-68
WP_002954299.1|395873_396419_-|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.5	3.3e-88
WP_002954298.1|396431_398546_-	hypothetical protein	NA	S4TP62	Salmonella_phage	65.6	3.5e-186
WP_001001824.1|398555_399143_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
WP_002954297.1|399135_400320_-|plate	phage baseplate	plate	F1BUK6	Cronobacter_phage	78.1	1.5e-178
WP_002954296.1|400316_400646_-	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
WP_002954295.1|400642_402610_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.5	4.3e-271
WP_000411498.1|402797_403055_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	61.0	3.1e-20
WP_000376378.1|403201_403534_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.0	4.4e-35
WP_000175558.1|403533_403875_-	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
WP_001154426.1|403871_404168_-|holin	holin	holin	C7BGD7	Burkholderia_phage	48.2	2.4e-16
WP_000166745.1|404180_404636_-	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	71.5	1.7e-58
WP_001534842.1|404632_405760_-	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.2	5.6e-175
WP_001534848.1|405756_406461_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	59.9	1.8e-70
WP_001534864.1|406457_406940_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	48.7	3.0e-37
WP_031622697.1|406936_407428_-|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	63.3	3.0e-48
WP_000505908.1|407482_407674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001534829.1|407692_408391_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	52.6	3.6e-63
WP_002954293.1|408402_409431_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	71.6	2.8e-133
WP_001534870.1|409465_410302_-|capsid	phage capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	49.2	4.8e-46
WP_002954292.1|410445_412230_+|terminase	phage terminase	terminase	F1BUM5	Cronobacter_phage	69.7	3.5e-248
WP_001534877.1|412226_413246_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	68.5	6.1e-136
WP_031622694.1|413245_413575_+	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	58.2	8.7e-28
WP_001534889.1|413618_414581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002954291.1|414718_417373_-	toprim domain-containing protein	NA	A0A077K8T2	Ralstonia_phage	46.6	2.1e-241
WP_001534831.1|417412_417631_-	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	45.0	2.8e-06
WP_002954290.1|417633_418203_-	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	47.4	1.5e-43
WP_001534817.1|418212_418545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002954289.1|418570_418909_-	phage regulatory protein	NA	NA	NA	NA	NA
WP_000185337.1|419006_419312_+	helix-turn-helix transcriptional regulator	NA	A0A0M5M1I9	Salmonella_phage	47.5	1.6e-15
WP_024132356.1|419378_420371_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0F7LBR0	Escherichia_phage	58.2	1.4e-108
WP_102025861.1|420534_420582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002954287.1|420681_421842_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_002954286.1|421802_422711_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225181.1|422768_423890_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|423899_424970_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212372.1|425410_425929_+	YfiR family protein	NA	NA	NA	NA	NA
WP_002954283.1|425921_427142_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_000065257.1|427297_427645_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002954282.1|427685_428453_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|428623_429172_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|429190_429439_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460056.1|429690_431052_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001664422.1|431217_432009_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127624524.1|432028_433315_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_023187382.1|433375_433969_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059150.1|434092_434971_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_002954280.1|435056_436718_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002954279.1|436866_437205_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|437366_437657_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242604.1|437646_438123_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|438272_438755_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_002954276.1|439374_450282_+	BapA prefix-like domain-containing protein	NA	NA	NA	NA	NA
WP_002954275.1|450346_451756_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_002954274.1|451752_453933_+	type I secretion system permease/ATPase	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.8	9.9e-19
WP_072094795.1|453940_455104_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_024139403.1|455703_456933_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	91.2	2.7e-215
WP_002954272.1|456971_457685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024139402.1|457819_458665_+	DNA adenine methylase	NA	A0A0P0YLW3	Yellowstone_lake_mimivirus	26.4	5.7e-15
WP_002954270.1|458683_460375_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_024139401.1|460409_461042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024139400.1|461554_463681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024139399.1|463996_464437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079791243.1|464584_466204_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_079791242.1|466285_467362_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
466662:466678	attL	AACCGAAGCGGAAAAAA	NA	NA	NA	NA
WP_002953965.1|467877_468192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002953966.1|468242_468668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002953967.1|468762_469161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002953968.1|469170_470775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002953969.1|470790_472116_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_002953970.1|472066_473335_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
478115:478131	attR	TTTTTTCCGCTTCGGTT	NA	NA	NA	NA
>prophage 2
NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	4576555	2503883	2574724	4576555	protease,tRNA,plate	uncultured_Mediterranean_phage(14.29%)	57	NA	NA
WP_000753960.1|2503883_2505311_+|protease	serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	5.5e-26
WP_000272192.1|2506038_2506425_-	DUF3461 family protein	NA	NA	NA	NA	NA
WP_002946960.1|2506671_2507973_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_001186671.1|2508009_2508834_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_001094537.1|2508863_2511536_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA	NA
WP_002946964.1|2511643_2512438_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_000246886.1|2512761_2513487_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_000808102.1|2513742_2514594_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_000224567.1|2514738_2515464_+	UMP kinase	NA	NA	NA	NA	NA
WP_000622422.1|2515610_2516168_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_000811909.1|2516309_2517506_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_000947408.1|2517815_2518574_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	42.2	3.2e-25
WP_000922422.1|2518586_2519444_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000949022.1|2519455_2520808_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
WP_001240919.1|2520839_2523272_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_002946985.1|2523394_2523880_+	molecular chaperone Skp	NA	NA	NA	NA	NA
WP_002946988.1|2523883_2524909_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_002946990.1|2525014_2525470_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_000565954.1|2525473_2526262_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_000741222.1|2526261_2527410_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_000569413.1|2527406_2528003_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	39.3	2.5e-25
WP_024139237.1|2528026_2531509_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.7	2.0e-207
WP_000055755.1|2531521_2532481_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_002947153.1|2532661_2534425_+	chitinase	NA	NA	NA	NA	NA
WP_002947141.1|2534501_2536643_+	lysine decarboxylase LdcC	NA	NA	NA	NA	NA
WP_002947139.1|2536698_2537088_+	VOC family protein	NA	NA	NA	NA	NA
WP_002947136.1|2537150_2538449_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_000062326.1|2538491_2538752_-	Rho-binding antiterminator	NA	NA	NA	NA	NA
WP_001518678.1|2538738_2538939_-	YaeP family protein	NA	NA	NA	NA	NA
WP_001185313.1|2539136_2539682_+	YaeQ family protein	NA	NA	NA	NA	NA
WP_000560532.1|2539678_2540101_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_002947110.1|2540132_2540834_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA	NA
WP_001260679.1|2540907_2542626_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_024139236.1|2542733_2543441_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_001202313.1|2543437_2543842_-	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
WP_000874218.1|2543960_2544776_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA	NA
WP_001287490.1|2544814_2545468_-	methionine ABC transporter permease MetI	NA	NA	NA	NA	NA
WP_002947095.1|2545460_2546492_-	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.6	2.5e-36
WP_002947093.1|2546681_2547248_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_002955139.1|2553848_2554124_+	hypothetical protein	NA	A0A1B5FPC6	Escherichia_phage	41.0	8.4e-08
WP_002955141.1|2554674_2555532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002955143.1|2555698_2555842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000737718.1|2555879_2556218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002955144.1|2556220_2557084_-	phage lysin	NA	NA	NA	NA	NA
WP_000013178.1|2557118_2557598_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_002955145.1|2557622_2558972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031622830.1|2558982_2562507_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_002955147.1|2562523_2563927_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_002955148.1|2563931_2564693_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_002955149.1|2564689_2567440_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.6	1.8e-86
WP_031622831.1|2567448_2568186_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_002955151.1|2568265_2569609_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_000147698.1|2569611_2570145_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_002955152.1|2570141_2571431_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_024139506.1|2571447_2572494_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_002955154.1|2572460_2574296_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_002955155.1|2574295_2574724_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 3
NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	4576555	3145342	3184309	4576555	transposase,bacteriocin,protease	Salmonella_phage(15.38%)	34	NA	NA
WP_079791240.1|3145342_3145825_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	6.2e-14
WP_002951970.1|3146436_3147330_+	virulence genes transcriptional activator SpvR	NA	NA	NA	NA	NA
WP_001576629.1|3147503_3147668_+	glycoside hydrolase family protein	NA	A0A0M4R365	Salmonella_phage	63.0	3.3e-12
WP_002951990.1|3147841_3148453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001526987.1|3148415_3148583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002951998.1|3148634_3150416_+	SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB	NA	NA	NA	NA	NA
WP_024139308.1|3150695_3151421_+	type III secretion system effector phosphothreonine lyase SpvC	NA	NA	NA	NA	NA
WP_024139309.1|3151683_3152334_+	SPI-2 type III secretion system effector cysteine hydrolase SpvD	NA	NA	NA	NA	NA
WP_153648987.1|3153851_3154868_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_139387167.1|3155792_3156002_+	hypothetical protein	NA	A0A077SLN2	Escherichia_phage	76.8	2.8e-24
WP_139387166.1|3156014_3156608_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A077SLN2	Escherichia_phage	83.2	1.7e-82
WP_126487936.1|3157032_3157350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002953204.1|3158041_3158446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002953208.1|3159853_3160399_+	glycoside hydrolase family 19 protein	NA	T1SBJ3	Salmonella_phage	79.4	3.6e-79
WP_153648988.1|3161338_3162235_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA	NA
WP_000658251.1|3163210_3163390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161715685.1|3163634_3163829_-|bacteriocin	colicin V family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001663761.1|3164173_3164413_-	DinI family protein	NA	K7PKR6	Enterobacteria_phage	81.0	9.8e-29
WP_001160724.1|3164724_3165048_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002949837.1|3165044_3165875_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	29.9	7.4e-07
WP_002949839.1|3165871_3166885_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001136497.1|3166980_3168414_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000566418.1|3168424_3169426_-	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_000815320.1|3169464_3171183_-	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.3	8.3e-29
WP_024139270.1|3171309_3172278_-	NADH oxidoreductase	NA	NA	NA	NA	NA
WP_002949850.1|3172289_3173942_-	hydroxylamine reductase	NA	NA	NA	NA	NA
WP_000491122.1|3174085_3174985_-	lysine exporter LysO family protein	NA	NA	NA	NA	NA
WP_000599758.1|3175185_3176844_+	ATP-dependent endonuclease	NA	NA	NA	NA	NA
WP_001663762.1|3176840_3177791_-	VirK/YbjX family protein	NA	NA	NA	NA	NA
WP_001201746.1|3177936_3179055_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.1e-08
WP_002949857.1|3179051_3180998_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.2	5.9e-39
WP_000447499.1|3181136_3181358_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520774.1|3181681_3182002_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934070.1|3182032_3184309_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.1	3.7e-165
>prophage 4
NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	4576555	4196440	4210391	4576555	integrase,tail	Phage_Gifsy-2(27.27%)	14	4193982:4193998	4208047:4208063
4193982:4193998	attL	GTAAAAGAAATGTTAAA	NA	NA	NA	NA
WP_153648996.1|4196440_4198552_-	E3 ubiquitin--protein ligase	NA	Q9MBL9	Phage_Gifsy-2	45.7	6.9e-25
WP_079791287.1|4198806_4198983_-	hypothetical protein	NA	Q8HAB3	Salmonella_phage	65.9	1.3e-06
WP_153648997.1|4200364_4202731_-	E3 ubiquitin--protein ligase	NA	Q9MBL9	Phage_Gifsy-2	45.7	3.8e-24
WP_077907681.1|4202887_4203340_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	73.0	8.8e-55
WP_002953407.1|4203420_4204245_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	40.2	2.0e-36
WP_002953404.1|4204675_4205359_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	74.3	2.7e-87
WP_000597305.1|4205941_4206220_+	hypothetical protein	NA	A0A2L1IV28	Escherichia_phage	55.4	1.8e-26
WP_001240607.1|4206219_4206504_+	HigA family addiction module antidote protein	NA	A0A2L1IV52	Escherichia_phage	54.5	4.7e-22
WP_139387176.1|4206662_4207001_-	T3SS effector NleG family protein	NA	B6DZB9	Enterobacteria_phage	47.3	1.2e-19
WP_071594981.1|4207637_4208039_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	49.2	1.8e-27
WP_000746717.1|4208405_4208756_-	YebY family protein	NA	NA	NA	NA	NA
4208047:4208063	attR	GTAAAAGAAATGTTAAA	NA	NA	NA	NA
WP_002953395.1|4208772_4209648_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_001664129.1|4209648_4210023_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000856224.1|4210160_4210391_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
>prophage 5
NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	4576555	4383555	4394829	4576555		Paramecium_bursaria_Chlorella_virus(12.5%)	10	NA	NA
WP_000704818.1|4383555_4384722_-	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	53.2	5.3e-112
WP_002953882.1|4384957_4386364_-	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	1.2e-36
WP_153649001.1|4386536_4387907_-	colanic acid biosynthesis phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	27.3	6.4e-32
WP_002953996.1|4387903_4388668_-	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	34.7	1.3e-10
WP_002953995.1|4388770_4390165_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	32.4	2.0e-60
WP_002953994.1|4390174_4390621_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
WP_002953993.1|4390630_4391593_-	GDP-L-fucose synthase	NA	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	51.4	5.8e-88
WP_002953992.1|4391596_4392718_-	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	65.4	1.0e-128
WP_002953991.1|4392736_4393738_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002953990.1|4393806_4394829_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	48.3	3.4e-86
>prophage 6
NZ_CP045761	Salmonella enterica subsp. houtenae str. CFSAN000552 strain SGSC 3086 isolate SARC10 chromosome, complete genome	4576555	4465996	4474553	4576555	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_000195344.1|4465996_4468030_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.7e-55
WP_002954031.1|4468270_4468729_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.9	3.4e-54
WP_000950420.1|4468870_4469341_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	92.1	3.0e-74
WP_002954032.1|4469387_4470107_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272840.1|4470103_4471789_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.7	3.8e-276
WP_002954033.1|4472011_4472743_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	88.4	4.1e-102
WP_001261696.1|4472802_4472910_+	protein YohO	NA	NA	NA	NA	NA
WP_000824860.1|4472890_4473622_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002954034.1|4473605_4474553_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.4	1.8e-09
