assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009648755.1_ASM964875v1	NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	1	270752-271452	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	TypeI-E	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	NA,NA	NA|179aa|up_9|NZ_CP045757.1_259296_259833_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP045757.1_259829_260300_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|161aa|up_7|NZ_CP045757.1_260314_260797_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP045757.1_260840_261614_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP045757.1_261626_264326_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP045757.1_264405_264993_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP045757.1_265601_266402_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP045757.1_266629_268267_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP045757.1_268349_269648_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP045757.1_269783_270455_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP045757.1_271549_272347_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP045757.1_272434_272797_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP045757.1_273220_275020_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP045757.1_275019_276732_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP045757.1_276807_277542_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP045757.1_277629_278583_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP045757.1_279026_281690_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_7|NZ_CP045757.1_281701_283261_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|down_8|NZ_CP045757.1_283257_283806_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP045757.1_283819_284878_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_009648755.1_ASM964875v1	NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	2	287574-288213	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,10,10	10	TypeI-E	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	NA,NA	NA|245aa|up_9|NZ_CP045757.1_276807_277542_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP045757.1_277629_278583_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP045757.1_279026_281690_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NZ_CP045757.1_281701_283261_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|up_5|NZ_CP045757.1_283257_283806_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP045757.1_283819_284878_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP045757.1_284888_285635_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP045757.1_285616_286267_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP045757.1_286263_287184_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP045757.1_287183_287477_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP045757.1_288227_289274_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP045757.1_289524_290433_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP045757.1_290442_291882_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP045757.1_291868_292474_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP045757.1_292491_292848_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP045757.1_293038_293350_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP045757.1_293368_294079_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP045757.1_294078_294558_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP045757.1_294554_295604_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP045757.1_295584_296346_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009648755.1_ASM964875v1	NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	3	4090905-4090999	3	CRISPRCasFinder	no	cas3	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	NA|31aa|up_5|NZ_CP045757.1_4085981_4086074_+,NA|160aa|up_4|NZ_CP045757.1_4086274_4086754_+,NA|38aa|up_2|NZ_CP045757.1_4088281_4088395_+,NA|155aa|up_0|NZ_CP045757.1_4089315_4089780_+,NA	NA|314aa|up_9|NZ_CP045757.1_4079926_4080868_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP045757.1_4080910_4081813_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP045757.1_4082318_4083014_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP045757.1_4083233_4085960_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP045757.1_4085981_4086074_+	NA	NA|160aa|up_4|NZ_CP045757.1_4086274_4086754_+	NA	NA|227aa|up_3|NZ_CP045757.1_4086982_4087663_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP045757.1_4088281_4088395_+	NA	NA|286aa|up_1|NZ_CP045757.1_4088447_4089305_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP045757.1_4089315_4089780_+	NA	NA|206aa|down_0|NZ_CP045757.1_4092801_4093419_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|461aa|down_1|NZ_CP045757.1_4095422_4096805_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_2|NZ_CP045757.1_4096816_4099135_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_3|NZ_CP045757.1_4099237_4100947_-	pfam05170, AsmA, AsmA family	NA|464aa|down_4|NZ_CP045757.1_4101067_4102459_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_5|NZ_CP045757.1_4102686_4103892_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	cas3|694aa|down_6|NZ_CP045757.1_4103927_4106009_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_7|NZ_CP045757.1_4106014_4106704_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|704aa|down_8|NZ_CP045757.1_4106708_4108820_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|92aa|down_9|NZ_CP045757.1_4108838_4109114_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit
GCF_009648755.1_ASM964875v1	NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	4	4597889-4597989	4	CRISPRCasFinder	no		csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas14j,PD-DExK	NA,NA|177aa|down_1|NZ_CP045757.1_4599507_4600038_-	NA|448aa|up_9|NZ_CP045757.1_4583967_4585311_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP045757.1_4585938_4586391_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP045757.1_4586418_4587921_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP045757.1_4587945_4590624_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP045757.1_4590844_4591246_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP045757.1_4591245_4592190_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP045757.1_4592340_4592610_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP045757.1_4592851_4594987_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP045757.1_4595096_4595981_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP045757.1_4596086_4596167_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP045757.1_4598202_4599447_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP045757.1_4599507_4600038_-	NA	NA|240aa|down_2|NZ_CP045757.1_4600196_4600916_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP045757.1_4600893_4601901_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP045757.1_4602078_4602975_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP045757.1_4602965_4603961_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP045757.1_4604177_4604702_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP045757.1_4604695_4605199_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP045757.1_4605185_4605503_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP045757.1_4605540_4605984_+	PRK03467, PRK03467, hypothetical protein; Provisional
