The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	4726556	987790	996961	4726556	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569168.1|987790_988738_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
WP_000824854.1|988721_989453_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|989433_989541_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|989600_990332_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|990554_992240_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|992236_992956_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|993002_993470_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|993526_994057_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|994228_994687_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195334.1|994927_996961_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	4726556	1167004	1174272	4726556		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1167004_1167424_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_017465541.1|1167426_1168695_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
WP_000208509.1|1169149_1169362_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|1169372_1169561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020839256.1|1169820_1171032_-	porin	NA	Q1MVN1	Enterobacteria_phage	56.5	3.4e-109
WP_020839257.1|1171681_1171993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017441839.1|1172072_1172768_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_001157322.1|1172841_1174272_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 3
NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	4726556	2083964	2184892	4726556	protease,holin,head,tRNA,capsid,portal,transposase,lysis,terminase,tail,integrase	Enterobacteria_phage(32.69%)	98	2109423:2109439	2189433:2189449
WP_020839432.1|2083964_2084645_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.5	3.4e-82
WP_000374046.1|2085263_2085923_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000904446.1|2086009_2086339_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000072884.1|2086335_2086617_-	acylphosphatase	NA	NA	NA	NA	NA
WP_017465795.1|2086665_2087445_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000859416.1|2087470_2088019_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000140480.1|2088233_2089445_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000561983.1|2089502_2089820_+	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000975203.1|2089864_2090281_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_000847719.1|2090451_2091114_+	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000424187.1|2091208_2091667_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_023193194.1|2091702_2093757_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.3	3.2e-19
WP_001261222.1|2093880_2094327_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000950869.1|2094345_2096499_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001202375.1|2096485_2097091_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000288732.1|2097307_2097817_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_023193195.1|2098172_2099225_+	porin OmpA	NA	NA	NA	NA	NA
WP_000877172.1|2099296_2099749_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000156448.1|2099934_2101695_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000227928.1|2101763_2102282_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001537784.1|2102381_2102549_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000759136.1|2102804_2103368_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_000433416.1|2103364_2105005_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000333153.1|2105009_2106263_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000053044.1|2106277_2108185_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_020839434.1|2108197_2110306_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
2109423:2109439	attL	CTCAGTTGCGCCACATC	NA	NA	NA	NA
WP_000224075.1|2110404_2111514_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001220671.1|2111510_2112053_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000291723.1|2112218_2113229_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_020839435.1|2113436_2116049_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	2.2e-20
WP_000497440.1|2116475_2116682_+	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_001536069.1|2117157_2117958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010835411.1|2118525_2120016_+	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.6	1.6e-254
WP_000143168.1|2120845_2121427_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.3e-94
WP_023193196.1|2121426_2123922_-|tail	Gifsy-2 prophage tail fiber protein	tail	E5G6P0	Salmonella_phage	76.1	7.3e-159
WP_000178849.1|2123975_2124218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000514902.1|2124256_2127619_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.5	0.0e+00
WP_001750110.1|2127680_2128328_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	1.6e-89
WP_000662738.1|2128225_2128963_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.2	9.8e-128
WP_001152686.1|2128969_2129668_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.6e-103
WP_000447370.1|2129677_2130007_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
WP_000372075.1|2130009_2133105_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.7	4.8e-277
WP_010989052.1|2133076_2133415_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000479607.1|2133411_2133807_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_000971954.1|2133857_2134604_-|tail	tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000033885.1|2134611_2135013_-|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000677089.1|2135009_2135588_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000817265.1|2135696_2136827_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	98.1	4.0e-213
WP_000083292.1|2136859_2137243_-|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.2e-28
WP_000201486.1|2137253_2137613_-	DNA packaging protein	NA	NA	NA	NA	NA
WP_000522566.1|2137670_2138699_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000011260.1|2138753_2139101_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_001189495.1|2139113_2140610_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.9	3.3e-98
WP_000831820.1|2140599_2142180_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	1.2e-188
WP_000201416.1|2142176_2142380_-|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	70.8	2.1e-16
WP_000623086.1|2142363_2144295_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.4	2.0e-257
WP_001102153.1|2144266_2144812_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000669693.1|2145097_2145499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001533543.1|2145734_2146187_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000984587.1|2146204_2146657_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	5.1e-79
WP_001574216.1|2146640_2146970_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_001110788.1|2147245_2147932_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM2	Phage_Gifsy-1	98.7	5.1e-131
WP_000798706.1|2148292_2148742_+	lipoprotein	NA	NA	NA	NA	NA
WP_001534733.1|2148877_2149003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839436.1|2149401_2150199_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001617856.1|2150188_2150335_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_000784707.1|2150331_2150559_-	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	76.8	6.6e-19
WP_000940758.1|2150555_2151155_-	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	6.1e-96
WP_024135617.1|2151218_2151524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001669261.1|2151743_2152235_-	DUF1076 domain-containing protein	NA	B6DZB9	Enterobacteria_phage	51.5	9.7e-23
WP_000089413.1|2152664_2153060_-	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	39.3	2.0e-18
WP_000788952.1|2153077_2153830_-	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	77.0	1.7e-103
WP_001617851.1|2153836_2154700_-	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.5	1.2e-31
WP_001669257.1|2154744_2155239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033909.1|2155225_2155480_-	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
WP_001224472.1|2155576_2156002_+	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
WP_024135615.1|2156445_2156625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613375.1|2157055_2157340_+	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
WP_000799631.1|2157414_2157750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000023724.1|2157879_2161059_+	DNA breaking-rejoining protein	NA	H6WRX1	Salmonella_phage	68.2	0.0e+00
WP_077906096.1|2161021_2162179_+	recombinase RecT	NA	S4TTE8	Salmonella_phage	98.7	6.7e-216
WP_001237031.1|2162221_2162461_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_000065276.1|2162501_2162750_+	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001262314.1|2162794_2164087_+|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.5	1.3e-252
WP_000191404.1|2164281_2165484_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_020839440.1|2165564_2166998_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000544857.1|2167243_2168458_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000762343.1|2168775_2169237_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000117867.1|2169437_2170838_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_020839441.1|2171443_2172535_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.5	2.8e-99
WP_000462653.1|2172719_2173910_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_001109471.1|2173971_2174619_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000357052.1|2174646_2175195_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_020839442.1|2175454_2177278_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_017440920.1|2177622_2182089_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000060025.1|2182088_2182793_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_001288828.1|2182773_2184096_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_001154028.1|2184088_2184892_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
2189433:2189449	attR	CTCAGTTGCGCCACATC	NA	NA	NA	NA
>prophage 4
NZ_CP045757	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 chromosome, complete genome	4726556	3317964	3328618	4726556		Enterobacteria_phage(55.56%)	12	NA	NA
WP_020839650.1|3317964_3320298_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.3	0.0e+00
WP_000743150.1|3320312_3320633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001604623.1|3320629_3320857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839651.1|3320853_3321405_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	71.3	1.1e-35
WP_020839652.1|3322185_3322923_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	65.7	3.1e-81
WP_000984205.1|3322919_3323165_+	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	77.8	1.6e-31
WP_020839654.1|3323181_3323748_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	2.6e-56
WP_020839655.1|3323967_3324531_-	type II restriction endonuclease PvuII	NA	A0A1B0UXL9	Roseobacter_phage	42.9	5.5e-30
WP_010376679.1|3324527_3324764_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000970946.1|3324819_3325815_+	site-specific DNA-methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	3.5e-19
WP_020839656.1|3325868_3327128_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	41.2	3.7e-74
WP_000152566.1|3327598_3328618_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	1.7e-42
>prophage 1
NZ_CP045758	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000669 plasmid pCFSAN000669, complete sequence	81815	57243	68935	81815	transposase,integrase	Macacine_betaherpesvirus(12.5%)	12	57197:57210	75117:75130
57197:57210	attL	GGGAAAAACCATGA	NA	NA	NA	NA
WP_020833584.1|57243_58026_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	90.2	1.7e-50
WP_000728920.1|58176_59118_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.0	1.4e-73
WP_001749329.1|59748_60003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000427674.1|60691_61897_+	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.6	1.4e-163
WP_077909669.1|61893_62871_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	1.1e-83
WP_020833581.1|62952_64227_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	1.3e-156
WP_020833580.1|64829_65501_-	hypothetical protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	8.2e-81
WP_020833579.1|65860_66538_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	37.4	1.5e-29
WP_020833578.1|66537_66759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833577.1|66769_67189_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_020833576.1|67243_68023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833575.1|68428_68935_+	antirestriction protein	NA	A0A1I9S7Y0	Rhodococcus_phage	28.9	1.1e-08
75117:75130	attR	GGGAAAAACCATGA	NA	NA	NA	NA
