The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045754	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 chromosome, complete genome	4726556	504802	515418	4726556		Morganella_phage(25.0%)	12	NA	NA
WP_001157322.1|504802_506233_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_017441839.1|506306_507002_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_020839257.1|507081_507393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839256.1|508042_509254_+	porin	NA	Q1MVN1	Enterobacteria_phage	56.5	3.4e-109
WP_024131163.1|509513_509702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|509712_509925_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_017465541.1|510379_511648_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
WP_000394197.1|511650_512070_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_001532308.1|512196_512358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017465540.1|512838_513636_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001736108.1|514007_514298_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	49.1	3.0e-08
WP_017465538.1|514944_515418_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	76.6	1.6e-38
>prophage 2
NZ_CP045754	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 chromosome, complete genome	4726556	682113	691284	4726556	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195334.1|682113_684147_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|684387_684846_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|685017_685548_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|685604_686072_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|686118_686838_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|686834_688520_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|688742_689474_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|689533_689641_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|689621_690353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569168.1|690336_691284_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
>prophage 3
NZ_CP045754	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 chromosome, complete genome	4726556	3077012	3087666	4726556		Enterobacteria_phage(55.56%)	12	NA	NA
WP_000152566.1|3077012_3078032_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	1.7e-42
WP_020839656.1|3078502_3079762_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	41.2	3.7e-74
WP_000970946.1|3079815_3080811_-	site-specific DNA-methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	3.5e-19
WP_010376679.1|3080866_3081103_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_020839655.1|3081099_3081663_+	type II restriction endonuclease PvuII	NA	A0A1B0UXL9	Roseobacter_phage	42.9	5.5e-30
WP_020839654.1|3081882_3082449_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	2.6e-56
WP_000984205.1|3082465_3082711_-	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	77.8	1.6e-31
WP_020839652.1|3082707_3083445_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	65.7	3.1e-81
WP_020839651.1|3084225_3084777_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	71.3	1.1e-35
WP_001604623.1|3084773_3085001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000743150.1|3084997_3085318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020839650.1|3085332_3087666_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.3	0.0e+00
>prophage 4
NZ_CP045754	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 chromosome, complete genome	4726556	4220738	4321666	4726556	tRNA,holin,transposase,integrase,portal,terminase,tail,lysis,protease,capsid,head	Enterobacteria_phage(32.69%)	98	4216182:4216198	4296192:4296208
4216182:4216198	attL	GATGTGGCGCAACTGAG	NA	NA	NA	NA
WP_001154028.1|4220738_4221542_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|4221534_4222857_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|4222837_4223542_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_017440920.1|4223541_4228008_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_020839442.1|4228352_4230176_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|4230435_4230984_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|4231011_4231659_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|4231720_4232911_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_020839441.1|4233095_4234187_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.5	2.8e-99
WP_000117867.1|4234792_4236193_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_000762343.1|4236393_4236855_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544857.1|4237172_4238387_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_020839440.1|4238632_4240066_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191404.1|4240146_4241349_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262314.1|4241543_4242836_-|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.5	1.3e-252
WP_000065276.1|4242880_4243129_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|4243169_4243409_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_077906096.1|4243451_4244609_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	98.7	6.7e-216
WP_000023724.1|4244571_4247751_-	DNA breaking-rejoining protein	NA	H6WRX1	Salmonella_phage	68.2	0.0e+00
WP_000799631.1|4247880_4248216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613375.1|4248290_4248575_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
WP_024135615.1|4249005_4249185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001224472.1|4249628_4250054_-	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
WP_001033909.1|4250150_4250405_+	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
WP_001669257.1|4250391_4250886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001617851.1|4250930_4251794_+	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.5	1.2e-31
WP_000788952.1|4251800_4252553_+	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	77.0	1.7e-103
WP_000089413.1|4252570_4252966_+	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	39.3	2.0e-18
WP_001669261.1|4253395_4253887_+	DUF1076 domain-containing protein	NA	B6DZB9	Enterobacteria_phage	51.5	9.7e-23
WP_024135617.1|4254106_4254412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000940758.1|4254475_4255075_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	6.1e-96
WP_000784707.1|4255071_4255299_+	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	76.8	6.6e-19
WP_001617856.1|4255295_4255442_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_020839436.1|4255431_4256229_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|4256627_4256753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|4256888_4257338_-	lipoprotein	NA	NA	NA	NA	NA
WP_001110788.1|4257698_4258385_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM2	Phage_Gifsy-1	98.7	5.1e-131
WP_001574216.1|4258660_4258990_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984587.1|4258973_4259426_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	5.1e-79
WP_001533543.1|4259443_4259896_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000669693.1|4260131_4260533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001102153.1|4260818_4261364_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000623086.1|4261335_4263267_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.4	2.0e-257
WP_000201416.1|4263250_4263454_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	70.8	2.1e-16
WP_000831820.1|4263450_4265031_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	1.2e-188
WP_001189495.1|4265020_4266517_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.9	3.3e-98
WP_000011260.1|4266529_4266877_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_000522566.1|4266931_4267960_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000201486.1|4268017_4268377_+	DNA packaging protein	NA	NA	NA	NA	NA
WP_000083292.1|4268387_4268771_+|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.2e-28
WP_000817265.1|4268803_4269934_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	98.1	4.0e-213
WP_000677089.1|4270042_4270621_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000033885.1|4270617_4271019_+|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000971954.1|4271026_4271773_+|tail	tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000479607.1|4271823_4272219_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_010989052.1|4272215_4272554_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000372075.1|4272525_4275621_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.7	4.8e-277
WP_000447370.1|4275623_4275953_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
WP_001152686.1|4275962_4276661_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.6e-103
WP_000662738.1|4276667_4277405_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.2	9.8e-128
WP_001750110.1|4277302_4277950_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	1.6e-89
WP_000514902.1|4278011_4281374_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.5	0.0e+00
WP_000178849.1|4281412_4281655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023193196.1|4281708_4284204_+|tail	Gifsy-2 prophage tail fiber protein	tail	E5G6P0	Salmonella_phage	76.1	7.3e-159
WP_000143168.1|4284203_4284785_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.3e-94
WP_010835411.1|4285614_4287105_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.6	1.6e-254
WP_001536069.1|4287672_4288473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497440.1|4288948_4289155_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_020839435.1|4289581_4292194_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	2.2e-20
WP_000291723.1|4292401_4293412_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|4293577_4294120_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224075.1|4294116_4295226_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_020839434.1|4295324_4297433_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
4296192:4296208	attR	GATGTGGCGCAACTGAG	NA	NA	NA	NA
WP_000053044.1|4297445_4299353_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333153.1|4299367_4300621_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433416.1|4300625_4302266_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|4302262_4302826_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|4303081_4303249_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|4303348_4303867_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156448.1|4303935_4305696_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|4305881_4306334_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_023193195.1|4306405_4307458_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|4307813_4308323_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|4308539_4309145_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950869.1|4309131_4311285_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|4311303_4311750_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_023193194.1|4311873_4313928_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.3	3.2e-19
WP_000424187.1|4313963_4314422_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|4314516_4315179_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000975203.1|4315349_4315766_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|4315810_4316128_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|4316185_4317397_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859416.1|4317611_4318160_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_017465795.1|4318185_4318965_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000072884.1|4319013_4319295_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|4319291_4319621_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374046.1|4319707_4320367_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_020839432.1|4320985_4321666_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.5	3.4e-82
>prophage 1
NZ_CP045755	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 plasmid p1CFSAN000752, complete sequence	81815	44460	56152	81815	integrase,transposase	Rhodococcus_phage(12.5%)	12	38266:38279	56186:56199
38266:38279	attL	TCATGGTTTTTCCC	NA	NA	NA	NA
WP_020833575.1|44460_44967_-	antirestriction protein	NA	A0A1I9S7Y0	Rhodococcus_phage	28.9	1.1e-08
WP_020833576.1|45372_46152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020833577.1|46206_46626_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_020833578.1|46636_46858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020833579.1|46857_47535_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	37.4	1.5e-29
WP_020833580.1|47894_48566_+	hypothetical protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	8.2e-81
WP_020833581.1|49168_50443_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	1.3e-156
WP_077909669.1|50524_51502_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	1.1e-83
WP_000427674.1|51498_52704_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.6	1.4e-163
WP_001749329.1|53392_53647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000728920.1|54277_55219_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.0	1.4e-73
WP_020833584.1|55369_56152_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	90.2	1.7e-50
56186:56199	attR	TCATGGTTTTTCCC	NA	NA	NA	NA
