The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045743	Listeria innocua strain CFSAN044836 chromosome, complete genome	2864595	368846	386372	2864595	integrase	Streptococcus_phage(100.0%)	20	363441:363456	387248:387263
363441:363456	attL	GAATTAGAAAAAGCAA	NA	NA	NA	NA
WP_001291561.1|368846_370064_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|370145_370349_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|370809_371040_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|371036_371459_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|371963_372317_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|372376_372544_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691736.1|372662_374582_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_001791010.1|374597_374714_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224320.1|374958_375894_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_000769868.1|375890_376892_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|376888_379066_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000331160.1|379068_381516_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|381499_382006_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|381980_382478_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|382594_382816_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|382858_384064_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|384086_384239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|384241_385627_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|385655_386042_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|386057_386372_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
387248:387263	attR	GAATTAGAAAAAGCAA	NA	NA	NA	NA
>prophage 2
NZ_CP045743	Listeria innocua strain CFSAN044836 chromosome, complete genome	2864595	403885	470324	2864595	integrase,protease,tRNA	Streptococcus_phage(15.0%)	60	431582:431598	463618:463634
WP_033533071.1|403885_405592_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003771665.1|405631_406894_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003762042.1|406907_408050_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003762041.1|408064_408853_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_033838142.1|408866_409625_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	40.6	1.1e-22
WP_003771660.1|409854_410412_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003723449.1|410411_411140_-	UMP kinase	NA	NA	NA	NA	NA
WP_003762030.1|411451_411853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077904834.1|411803_413009_+	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.4	7.8e-90
WP_003762027.1|412998_414303_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.3	2.5e-134
WP_045554129.1|414312_414819_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	62.8	1.7e-54
WP_153648153.1|414841_415573_+	methyltransferase domain-containing protein	NA	A0A1X9I6N4	Streptococcus_phage	58.8	3.1e-81
WP_003723442.1|415623_415863_-	YneF family protein	NA	NA	NA	NA	NA
WP_010991490.1|416085_418080_-	transketolase	NA	NA	NA	NA	NA
WP_003771647.1|418226_418454_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_153648154.1|418534_418876_-	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003762009.1|419033_419648_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_153648155.1|419677_420199_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010990934.1|420232_421528_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	63.5	5.0e-151
WP_003762004.1|421670_423005_-	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	29.2	1.0e-05
WP_003719570.1|423075_423444_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_153648156.1|423645_424872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003771634.1|424864_426088_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003719566.1|426195_426429_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_153648157.1|426550_427468_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_033533077.1|427592_429269_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_033533078.1|429492_430200_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	49.3	1.4e-09
WP_010990928.1|430408_432310_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	32.8	6.6e-43
431582:431598	attL	GCTGTTTTAGCAGTGTT	NA	NA	NA	NA
WP_153648158.1|432417_434280_-	LapB repeat-containing protein	NA	NA	NA	NA	NA
WP_153648795.1|434631_435099_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_153648159.1|435179_437636_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	33.0	3.0e-104
WP_045553001.1|437632_439600_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	1.8e-123
WP_003761982.1|439775_440186_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_003761980.1|440343_440940_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_070753236.1|440982_441855_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003761975.1|441857_442169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003761973.1|442191_442611_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003747412.1|442713_443493_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_153648160.1|443513_444923_-|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	5.8e-44
WP_003761964.1|444936_445476_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_153648161.1|445497_446400_-	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.8	5.2e-14
WP_033533085.1|446683_447988_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003766673.1|448051_450130_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	4.1e-107
WP_153648162.1|450399_451260_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_045554118.1|451394_452180_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	4.4e-25
WP_153648163.1|452176_453043_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_153648164.1|453130_454387_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZK8	Lactococcus_phage	25.3	3.5e-16
WP_153648165.1|454468_454717_-	DNA-binding protein	NA	Q9AZF3	Lactococcus_phage	49.3	7.0e-14
WP_153648166.1|457319_457724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153648167.1|457928_458657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153648168.1|458658_460926_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_153648169.1|460922_462704_-	site-specific DNA-methyltransferase	NA	A0A2K5B255	Erysipelothrix_phage	27.1	1.2e-33
WP_003771599.1|463136_463679_-	type I signal peptidase SipZ	NA	NA	NA	NA	NA
463618:463634	attR	AACACTGCTAAAACAGC	NA	NA	NA	NA
WP_003761950.1|463781_464351_-	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003771597.1|464386_464953_-	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003766662.1|465072_466332_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.9	4.0e-145
WP_003771581.1|466517_467801_-	trigger factor	NA	NA	NA	NA	NA
WP_003771578.1|467915_468854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153648170.1|469109_469775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153648171.1|469790_470324_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
>prophage 3
NZ_CP045743	Listeria innocua strain CFSAN044836 chromosome, complete genome	2864595	1558250	1570329	2864595	tail	Listeria_phage(44.44%)	15	NA	NA
WP_070752029.1|1558250_1559387_-	hypothetical protein	NA	A8ATA9	Listeria_phage	29.3	1.4e-53
WP_010990247.1|1559396_1560215_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	34.9	1.8e-37
WP_045553689.1|1560211_1562080_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	51.6	1.3e-19
WP_153648487.1|1562066_1562507_-	phenylalanine racemase	NA	NA	NA	NA	NA
WP_003759832.1|1562512_1562815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003759830.1|1562862_1563375_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	63.4	1.2e-47
WP_010990245.1|1563387_1563777_-	DUF5072 family protein	NA	NA	NA	NA	NA
WP_153648488.1|1564056_1564473_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.7e-20
WP_010990243.1|1564484_1564913_-	hypothetical protein	NA	A8ATZ8	Listeria_phage	46.9	2.1e-13
WP_003764864.1|1565129_1565465_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	2.3e-20
WP_112120332.1|1565470_1565923_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	45.8	8.9e-31
WP_010990242.1|1566097_1566793_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_010990241.1|1566762_1567461_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003772584.1|1567610_1568444_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033838291.1|1568586_1570329_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	3.6e-56
>prophage 4
NZ_CP045743	Listeria innocua strain CFSAN044836 chromosome, complete genome	2864595	2042812	2050656	2864595		Streptococcus_phage(50.0%)	7	NA	NA
WP_070023918.1|2042812_2043772_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	54.1	1.5e-88
WP_153648824.1|2043887_2044871_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.4	1.1e-52
WP_153648591.1|2044886_2045948_+	galactose-1-epimerase	NA	NA	NA	NA	NA
WP_153648592.1|2045992_2047723_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	52.6	1.2e-171
WP_003763899.1|2047831_2048707_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	30.5	4.9e-09
WP_003768284.1|2048708_2049677_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	42.9	1.1e-67
WP_003768282.1|2049684_2050656_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
>prophage 5
NZ_CP045743	Listeria innocua strain CFSAN044836 chromosome, complete genome	2864595	2197486	2239505	2864595	holin,plate,terminase,tail	Listeria_phage(92.86%)	68	NA	NA
WP_003749261.1|2197486_2197834_+	helix-turn-helix transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
WP_153648626.1|2197881_2198349_-	competence protein ComK	NA	NA	NA	NA	NA
WP_003725104.1|2198339_2199698_-	recombinase family protein	NA	Q9T193	Listeria_phage	97.3	4.7e-253
WP_003725103.1|2199779_2200667_-	hypothetical protein	NA	A0A0B5CYL8	Listeria_phage	99.7	1.1e-160
WP_003725102.1|2200890_2201598_-	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	93.6	4.8e-116
WP_020830685.1|2201659_2202265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003725101.1|2202279_2202498_-	zinc ribbon domain-containing protein	NA	A0A059T6E3	Listeria_phage	95.8	2.3e-32
WP_003725100.1|2202520_2203012_-	hypothetical protein	NA	A8ATX4	Listeria_phage	98.2	7.0e-90
WP_003725099.1|2203042_2203351_-	helix-turn-helix transcriptional regulator	NA	A8ATX5	Listeria_phage	99.0	1.6e-47
WP_003725098.1|2203499_2203769_+	helix-turn-helix transcriptional regulator	NA	A8ATX6	Listeria_phage	86.5	3.9e-34
WP_003725144.1|2203773_2203959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020830686.1|2203918_2204182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003725140.1|2204196_2204430_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003741072.1|2204576_2204795_+	helix-turn-helix transcriptional regulator	NA	A0A1U9WQN6	Geobacillus_phage	44.0	1.2e-06
WP_003725143.1|2204991_2205294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031645250.1|2205467_2205662_+	hypothetical protein	NA	A0A059T6E5	Listeria_phage	89.1	2.5e-22
WP_153648627.1|2205673_2205955_+	hypothetical protein	NA	Q9T180	Listeria_phage	89.2	3.7e-35
WP_003725092.1|2206154_2206358_-	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	56.7	2.0e-14
WP_061385619.1|2206421_2207210_+	antirepressor	NA	Q9T178	Listeria_phage	93.5	1.0e-135
WP_153648628.1|2207331_2207865_+	hypothetical protein	NA	A8ASM7	Listeria_phage	89.0	7.9e-79
WP_023552473.1|2207861_2208077_+	hypothetical protein	NA	Q9T176	Listeria_phage	91.5	5.7e-28
WP_010989962.1|2208184_2208373_+	hypothetical protein	NA	Q9T175	Listeria_phage	79.0	2.0e-21
WP_010991174.1|2208605_2209565_+	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	99.4	1.3e-177
WP_061729903.1|2209564_2210380_+	recombinase RecT	NA	A8ATY6	Listeria_phage	97.0	1.2e-147
WP_153648629.1|2210399_2211329_+	DnaD domain protein	NA	A8ATY7	Listeria_phage	94.5	1.5e-157
WP_009932913.1|2211325_2211427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061112825.1|2211410_2212019_+	hypothetical protein	NA	A8ATU1	Listeria_phage	49.5	8.2e-56
WP_061112824.1|2212030_2212576_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	45.4	4.6e-34
WP_061112823.1|2212572_2212839_+	hypothetical protein	NA	R4IBL5	Listeria_phage	89.5	1.2e-35
WP_162007589.1|2212858_2213092_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	68.5	1.2e-15
WP_031674202.1|2213108_2213423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023553777.1|2213528_2213741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003733707.1|2213763_2214258_+	hypothetical protein	NA	A0A1S5SDR7	Streptococcus_phage	47.6	6.1e-33
WP_003733708.1|2214262_2214475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153648630.1|2214475_2214958_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	86.9	2.6e-73
WP_003725078.1|2214977_2215283_+	hypothetical protein	NA	A8ATZ8	Listeria_phage	63.4	1.2e-26
WP_009930874.1|2215279_2215420_+	BH0509 family protein	NA	A8ATZ9	Listeria_phage	84.8	1.4e-14
WP_003725077.1|2215385_2215790_+	hypothetical protein	NA	A8AU00	Listeria_phage	90.3	3.8e-65
WP_003734997.1|2215930_2216086_+	hypothetical protein	NA	A0A0B5D186	Listeria_phage	96.1	7.5e-22
WP_003725075.1|2216173_2216746_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0B5CTZ3	Listeria_phage	83.2	5.5e-86
WP_096811311.1|2217006_2217234_+	hypothetical protein	NA	A0A0B5CTV3	Listeria_phage	94.7	1.8e-32
WP_003733714.1|2217273_2218014_+	hypothetical protein	NA	A8ATU5	Listeria_phage	98.8	7.0e-134
WP_010991159.1|2218006_2219326_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	94.3	7.1e-254
WP_153648631.1|2219340_2220900_+	hypothetical protein	NA	A8ATU7	Listeria_phage	96.9	2.7e-292
WP_003719493.1|2220904_2221948_+	gp4	NA	A0A0B5D111	Listeria_phage	98.3	9.7e-198
WP_153648632.1|2222043_2222598_+	hypothetical protein	NA	A8ATU9	Listeria_phage	91.3	3.9e-81
WP_003723787.1|2222620_2223493_+	hypothetical protein	NA	A0A0B5CTX8	Listeria_phage	93.8	2.3e-152
WP_003723785.1|2223662_2224016_+	hypothetical protein	NA	A8ATV2	Listeria_phage	99.1	8.4e-61
WP_026750199.1|2224015_2224381_+	hypothetical protein	NA	A8ATV3	Listeria_phage	95.0	2.1e-62
WP_080147573.1|2224370_2224688_+	HK97 gp10 family phage protein	NA	A8ATV4	Listeria_phage	92.4	9.5e-48
WP_003740885.1|2224684_2225089_+	hypothetical protein	NA	A8ATV5	Listeria_phage	99.2	1.2e-63
WP_003723782.1|2225060_2225492_+	Ig domain-containing protein	NA	A0A0B5CYK8	Listeria_phage	82.9	8.1e-58
WP_041197790.1|2225514_2225754_+	hypothetical protein	NA	A8ASK3	Listeria_phage	88.6	4.0e-30
WP_020830700.1|2225802_2226234_+	hypothetical protein	NA	A8ATV7	Listeria_phage	94.4	7.8e-69
WP_153648633.1|2226230_2226542_+	hypothetical protein	NA	A0A0B5D116	Listeria_phage	94.5	1.9e-40
WP_031642352.1|2226546_2231349_+|tail	phage tail tape measure protein	tail	A0A0B5CTS6	Listeria_phage	87.0	0.0e+00
WP_031642356.1|2231352_2232177_+|tail	phage tail family protein	tail	A0A0B5CTY7	Listeria_phage	98.2	4.3e-156
WP_031642358.1|2232189_2233203_+	hypothetical protein	NA	A0A0B5CYL4	Listeria_phage	99.4	4.4e-187
WP_070213810.1|2233199_2234228_+	hypothetical protein	NA	A0A0B5D0C2	Listeria_phage	86.5	1.1e-166
WP_153648634.1|2234224_2235292_+|plate	BppU family phage baseplate upper protein	plate	A0A0B5CTW3	Listeria_phage	93.8	1.4e-183
WP_031642362.1|2235288_2235630_+	hypothetical protein	NA	A8ASL1	Listeria_phage	93.8	1.5e-54
WP_003740843.1|2235630_2235777_+	XkdX family protein	NA	A0A0B5CYN8	Listeria_phage	100.0	1.5e-19
WP_003733957.1|2235817_2236123_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_020830702.1|2236122_2236404_+|holin	phage holin	holin	A0A059T664	Listeria_phage	98.9	5.1e-45
WP_003740832.1|2236403_2237273_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	A8ASL5	Listeria_phage	98.3	7.1e-170
WP_003725050.1|2237396_2238197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003725049.1|2238198_2239023_+	DUF3037 domain-containing protein	NA	NA	NA	NA	NA
WP_003725136.1|2239271_2239505_+	hypothetical protein	NA	A8ATC5	Listeria_phage	92.2	1.2e-34
>prophage 6
NZ_CP045743	Listeria innocua strain CFSAN044836 chromosome, complete genome	2864595	2756575	2764858	2864595		Prochlorococcus_phage(33.33%)	8	NA	NA
WP_153648764.1|2756575_2757868_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.8	1.1e-17
WP_003762857.1|2757948_2758662_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	39.6	9.4e-43
WP_003722248.1|2758673_2758919_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_153648765.1|2758922_2759606_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003769069.1|2759598_2761818_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.0	2.2e-159
WP_003762854.1|2761802_2763230_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	6.2e-54
WP_003769067.1|2763248_2764295_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	1.1e-60
WP_153648766.1|2764291_2764858_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.7	6.3e-26
>prophage 1
NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	57553	0	7725	57553	transposase,protease	Paenibacillus_phage(25.0%)	8	NA	NA
WP_003728504.1|686_1031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728505.1|1235_1970_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_013315188.1|2144_3485_-|transposase	IS3 family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	38.6	1.1e-31
WP_003728507.1|3760_5875_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.1	3.4e-117
WP_003728509.1|6302_6539_-	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	53.4	6.7e-14
WP_003731679.1|6501_6780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728510.1|6899_7127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728511.1|7116_7725_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	42.9	1.0e-21
>prophage 2
NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	57553	11054	28146	57553	transposase	Lactobacillus_phage(27.27%)	19	NA	NA
WP_003728514.1|11054_11309_+|transposase	transposase	transposase	Q6J1X3	Lactobacillus_phage	46.4	1.6e-13
WP_115914824.1|11305_12193_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	51.1	7.3e-69
WP_003731678.1|12282_12999_-	AP2 domain-containing protein	NA	O03945	Lactobacillus_phage	31.0	3.8e-20
WP_003728517.1|13014_13737_-	CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
WP_003728518.1|13740_14166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728519.1|14166_14415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728520.1|14536_15025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728521.1|15183_15567_-	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	53.4	2.2e-14
WP_003731676.1|15579_16242_-	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
WP_003728462.1|16241_16568_-	hypothetical protein	NA	A0A2K9V3N4	Faecalibacterium_phage	40.8	3.2e-06
WP_003728463.1|16698_16950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728464.1|17010_17253_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003728465.1|17246_17588_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_003728466.1|17780_19916_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	1.6e-247
WP_003728467.1|19915_20275_-	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
WP_045554658.1|20554_21109_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	46.1	5.4e-38
WP_003728469.1|21112_24028_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	1.9e-174
WP_031644889.1|25210_27367_-	copper-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	31.0	1.1e-70
WP_003728472.1|27582_28146_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	2.0e-40
>prophage 3
NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	57553	31938	34583	57553	transposase	Streptococcus_phage(100.0%)	2	NA	NA
WP_043993356.1|31938_32580_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	3.0e-101
WP_003728476.1|32699_34583_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.3	5.6e-87
>prophage 4
NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	57553	37795	44889	57553	transposase	Erysipelothrix_phage(20.0%)	7	NA	NA
WP_003728481.1|37795_39160_-	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.5	1.9e-07
WP_002389568.1|39783_40464_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	90.7	2.6e-119
WP_072235488.1|41029_41437_-	hypothetical protein	NA	H2DE57	Erwinia_phage	46.0	1.4e-11
WP_012952173.1|41478_41823_-	TnpV protein	NA	NA	NA	NA	NA
WP_011011011.1|42535_42934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728486.1|43107_43443_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPK3	Marinitoga_camini_virus	35.0	2.8e-05
WP_012952172.1|44124_44889_-	Fic family protein	NA	A0A0G3Y4Q5	Ostreid_herpesvirus	29.4	2.6e-06
>prophage 5
NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	57553	49563	52235	57553	transposase	Lactococcus_phage(66.67%)	3	NA	NA
WP_003728496.1|49563_50790_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	60.6	4.7e-135
WP_003755398.1|50758_51556_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	63.2	3.3e-81
WP_023553716.1|51647_52235_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.7	2.5e-33
>prophage 6
NZ_CP045744	Listeria innocua strain CFSAN044836 plasmid pCFSAN044836, complete sequence	57553	55672	56647	57553		Enterococcus_phage(100.0%)	1	NA	NA
WP_003728501.1|55672_56647_+	AAA family ATPase	NA	F0PIG8	Enterococcus_phage	35.0	2.4e-33
