assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	1	248822-248956	1	PILER-CR	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP045741.1_239530_239908_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP045741.1_239914_240757_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP045741.1_240834_241314_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP045741.1_241505_243368_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP045741.1_243360_243891_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP045741.1_243998_245330_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP045741.1_245386_245674_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP045741.1_245670_246957_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP045741.1_247007_247949_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP045741.1_247963_248734_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP045741.1_249201_250716_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP045741.1_250746_251889_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP045741.1_252017_253235_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|488aa|down_3|NZ_CP045741.1_253308_254772_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP045741.1_254876_255662_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP045741.1_255667_256258_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP045741.1_256343_256739_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP045741.1_257000_260222_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP045741.1_260239_261388_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP045741.1_261843_262665_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	2	1702327-1702467	1	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA|357aa|down_1|NZ_CP045741.1_1704921_1705992_-	NA|184aa|up_9|NZ_CP045741.1_1692048_1692600_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP045741.1_1692604_1693849_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP045741.1_1694247_1695213_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP045741.1_1695495_1696482_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP045741.1_1696560_1697253_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP045741.1_1697329_1697833_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP045741.1_1697917_1699054_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP045741.1_1699337_1699652_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP045741.1_1699648_1700065_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP045741.1_1700109_1702128_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP045741.1_1702553_1704905_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP045741.1_1704921_1705992_-	NA	NA|478aa|down_2|NZ_CP045741.1_1706125_1707559_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP045741.1_1707621_1708071_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP045741.1_1708067_1711160_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP045741.1_1711343_1712327_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP045741.1_1712545_1712878_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP045741.1_1712919_1714410_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP045741.1_1714716_1716237_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP045741.1_1716390_1717014_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	3	2029337-2029669	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP045741.1_2028046_2028187_-,NA	NA|434aa|up_9|NZ_CP045741.1_2018743_2020045_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP045741.1_2020092_2022327_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP045741.1_2022404_2022653_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP045741.1_2022652_2022988_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP045741.1_2023058_2023850_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP045741.1_2024077_2025715_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP045741.1_2025802_2027101_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP045741.1_2027160_2028033_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP045741.1_2028046_2028187_-	NA	NA|224aa|up_0|NZ_CP045741.1_2028325_2028997_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP045741.1_2030308_2031787_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP045741.1_2031813_2033091_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP045741.1_2033409_2034195_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP045741.1_2034264_2035719_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP045741.1_2035740_2037150_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP045741.1_2037127_2037907_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP045741.1_2037870_2038764_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP045741.1_2038911_2039487_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP045741.1_2039503_2039764_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP045741.1_2039754_2041026_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	4	2055220-2055982	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP045741.1_2043583_2045296_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP045741.1_2045370_2046105_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP045741.1_2046463_2049130_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP045741.1_2049544_2051053_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP045741.1_2051045_2051528_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP045741.1_2051540_2052632_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP045741.1_2052634_2053309_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP045741.1_2053295_2053895_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP045741.1_2053910_2054828_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP045741.1_2054829_2055114_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP045741.1_2056064_2057102_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP045741.1_2057353_2058262_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP045741.1_2058263_2059691_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP045741.1_2059690_2060296_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP045741.1_2060345_2060669_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP045741.1_2060862_2061174_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP045741.1_2061192_2061903_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP045741.1_2061902_2062382_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP045741.1_2062378_2063428_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP045741.1_2063408_2064170_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	5	2579445-2579562	4	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP045741.1_2568730_2568916_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP045741.1_2568928_2569828_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP045741.1_2570020_2571211_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP045741.1_2571207_2572467_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP045741.1_2572456_2574085_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP045741.1_2574357_2575716_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP045741.1_2575720_2576797_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP045741.1_2577259_2577910_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP045741.1_2577963_2578218_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP045741.1_2578217_2579348_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP045741.1_2579581_2581867_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP045741.1_2582562_2586315_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP045741.1_2586442_2587165_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP045741.1_2587311_2589939_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP045741.1_2590087_2591776_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP045741.1_2591772_2592396_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP045741.1_2596934_2598584_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP045741.1_2598588_2599365_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP045741.1_2599438_2600623_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP045741.1_2600653_2601976_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	6	3181263-3181386	5	CRISPRCasFinder	no	DEDDh	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP045741.1_3190282_3190372_+	NA|471aa|up_9|NZ_CP045741.1_3170717_3172130_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP045741.1_3172686_3172896_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP045741.1_3173350_3173977_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP045741.1_3173997_3176100_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP045741.1_3176112_3176751_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP045741.1_3176814_3177483_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP045741.1_3177479_3178265_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP045741.1_3178268_3179081_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP045741.1_3179092_3180697_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP045741.1_3180822_3181128_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP045741.1_3181700_3182957_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP045741.1_3182997_3184371_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP045741.1_3184585_3185227_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP045741.1_3185266_3186415_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP045741.1_3186705_3187917_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP045741.1_3188029_3188962_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP045741.1_3188958_3189984_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP045741.1_3190282_3190372_+	NA	NA|390aa|down_8|NZ_CP045741.1_3190537_3191707_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP045741.1_3191868_3192450_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	7	3911051-3911142	6	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP045741.1_3900127_3900337_-,NA	NA|70aa|up_9|NZ_CP045741.1_3900127_3900337_-	NA	NA|1321aa|up_8|NZ_CP045741.1_3900391_3904354_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP045741.1_3904393_3905032_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP045741.1_3905319_3906411_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP045741.1_3906410_3907103_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP045741.1_3907114_3907501_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP045741.1_3907508_3908309_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP045741.1_3908318_3908909_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP045741.1_3908919_3909414_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP045741.1_3909434_3910763_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP045741.1_3911565_3912162_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP045741.1_3912182_3912410_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP045741.1_3912447_3913689_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|112aa|down_3|NZ_CP045741.1_3913981_3914317_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP045741.1_3915488_3916409_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP045741.1_3916408_3916714_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP045741.1_3916865_3917465_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP045741.1_3917461_3920008_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP045741.1_3920007_3921180_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP045741.1_3921309_3922002_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	8	4173332-4173476	7	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|NZ_CP045741.1_4161230_4162220_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP045741.1_4162616_4163525_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP045741.1_4163716_4165738_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP045741.1_4166316_4166994_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP045741.1_4166986_4167742_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP045741.1_4167728_4168883_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP045741.1_4168879_4169920_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP045741.1_4170006_4171296_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP045741.1_4171354_4171831_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP045741.1_4171982_4173266_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP045741.1_4173499_4175761_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP045741.1_4175943_4177377_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP045741.1_4177452_4178505_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP045741.1_4178688_4179642_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP045741.1_4179682_4180678_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP045741.1_4180832_4181651_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP045741.1_4181651_4182710_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP045741.1_4182712_4183402_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP045741.1_4183401_4184175_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP045741.1_4184341_4184491_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	9	4417511-4417607	8	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP045741.1_4409306_4409999_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP045741.1_4410218_4410761_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP045741.1_4411231_4412098_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP045741.1_4412099_4412312_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP045741.1_4412419_4412941_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP045741.1_4412976_4414362_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP045741.1_4414535_4415030_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP045741.1_4415032_4415755_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP045741.1_4415872_4416382_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP045741.1_4416378_4417446_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP045741.1_4417640_4418534_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP045741.1_4418530_4419346_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP045741.1_4419356_4420616_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP045741.1_4420625_4422293_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP045741.1_4422609_4423659_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP045741.1_4423680_4424916_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP045741.1_4424926_4425712_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP045741.1_4425939_4427085_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP045741.1_4427106_4428408_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP045741.1_4428464_4429826_-	PRK08044, PRK08044, allantoinase AllB
GCF_009648495.1_ASM964849v1	NZ_CP045741	Escherichia coli strain DH5alpha chromosome, complete genome	10	4557746-4557890	9	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP045741.1_4559935_4560019_-	NA|357aa|up_9|NZ_CP045741.1_4542884_4543955_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP045741.1_4544047_4544629_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP045741.1_4544633_4546451_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP045741.1_4546606_4547980_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP045741.1_4548055_4549375_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP045741.1_4549781_4551077_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP045741.1_4551134_4551824_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP045741.1_4552013_4553216_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP045741.1_4553212_4556359_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP045741.1_4556484_4557669_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP045741.1_4557913_4558822_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP045741.1_4558946_4559858_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP045741.1_4559935_4560019_-	NA	NA|95aa|down_3|NZ_CP045741.1_4560504_4560789_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP045741.1_4560860_4561538_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP045741.1_4561795_4561987_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP045741.1_4562036_4562561_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP045741.1_4562743_4563202_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP045741.1_4563321_4564131_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP045741.1_4564147_4565263_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
