assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009646095.1_ASM964609v1	NZ_CP045725	Raineyella sp. CBA3103 chromosome, complete genome	1	1205020-1205112	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	GCCACCCTGGTTGCCGTAGCCACC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|128aa|up_5|NZ_CP045725.1_1198841_1199225_-,NA	NA|275aa|up_9|NZ_CP045725.1_1195112_1195937_+	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|197aa|up_8|NZ_CP045725.1_1196113_1196704_-	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|188aa|up_7|NZ_CP045725.1_1196878_1197442_+	COG1246, ArgA, N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]	NA|398aa|up_6|NZ_CP045725.1_1197577_1198771_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|128aa|up_5|NZ_CP045725.1_1198841_1199225_-	NA	NA|744aa|up_4|NZ_CP045725.1_1199304_1201536_-	PRK15061, PRK15061, catalase/peroxidase	NA|251aa|up_3|NZ_CP045725.1_1201788_1202541_+	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|446aa|up_2|NZ_CP045725.1_1202562_1203900_+	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|149aa|up_1|NZ_CP045725.1_1204145_1204592_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|78aa|up_0|NZ_CP045725.1_1204614_1204848_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|98aa|down_0|NZ_CP045725.1_1205676_1205970_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|139aa|down_1|NZ_CP045725.1_1206226_1206643_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|626aa|down_2|NZ_CP045725.1_1207737_1209615_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|352aa|down_3|NZ_CP045725.1_1209622_1210678_-	cd19150, AKR_AKR14A1, Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ/AKR14A1) and similar proteins	NA|212aa|down_4|NZ_CP045725.1_1212239_1212875_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|393aa|down_5|NZ_CP045725.1_1213015_1214194_+	PRK07588, PRK07588, FAD-binding domain	NA|172aa|down_6|NZ_CP045725.1_1214223_1214739_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|271aa|down_7|NZ_CP045725.1_1214820_1215633_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|263aa|down_8|NZ_CP045725.1_1215643_1216432_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|274aa|down_9|NZ_CP045725.1_1216531_1217353_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like
GCF_009646095.1_ASM964609v1	NZ_CP045725	Raineyella sp. CBA3103 chromosome, complete genome	2	2567880-2567974	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	TGGGCGGCGCTGGGCTGGTAGCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA|103aa|up_6|NZ_CP045725.1_2556041_2556350_+,NA	NA|748aa|up_9|NZ_CP045725.1_2551274_2553518_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|415aa|up_8|NZ_CP045725.1_2553692_2554937_-	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|304aa|up_7|NZ_CP045725.1_2554933_2555845_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|103aa|up_6|NZ_CP045725.1_2556041_2556350_+	NA	NA|276aa|up_5|NZ_CP045725.1_2560225_2561053_+	PRK11036, PRK11036, tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA|392aa|up_4|NZ_CP045725.1_2561114_2562290_+	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa	NA|128aa|up_3|NZ_CP045725.1_2562460_2562844_+	pfam11239, DUF3040, Protein of unknown function (DUF3040)	NA|757aa|up_2|NZ_CP045725.1_2563232_2565503_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|430aa|up_1|NZ_CP045725.1_2565499_2566789_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|307aa|up_0|NZ_CP045725.1_2566792_2567713_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|143aa|down_0|NZ_CP045725.1_2568859_2569288_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|346aa|down_1|NZ_CP045725.1_2569474_2570512_+	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA|204aa|down_2|NZ_CP045725.1_2570511_2571123_+	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau	NA|754aa|down_3|NZ_CP045725.1_2571125_2573387_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|505aa|down_4|NZ_CP045725.1_2573544_2575059_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|507aa|down_5|NZ_CP045725.1_2575061_2576582_+	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	NA|365aa|down_6|NZ_CP045725.1_2576578_2577673_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|450aa|down_7|NZ_CP045725.1_2579183_2580533_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|365aa|down_8|NZ_CP045725.1_2580529_2581624_+	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	NA|274aa|down_9|NZ_CP045725.1_2583028_2583850_+	PRK05529, PRK05529, cell division protein FtsQ; Provisional
GCF_009646095.1_ASM964609v1	NZ_CP045725	Raineyella sp. CBA3103 chromosome, complete genome	3	2633811-2633908	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,DinG	Orphan	AAGAAGACGACCCGCAAGACCGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,DinG	NA,NA	NA|334aa|up_9|NZ_CP045725.1_2617894_2618896_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|399aa|up_8|NZ_CP045725.1_2619047_2620244_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|312aa|up_7|NZ_CP045725.1_2621407_2622343_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|84aa|up_6|NZ_CP045725.1_2622577_2622829_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|119aa|up_5|NZ_CP045725.1_2622869_2623226_+	pfam13397, RbpA, RNA polymerase-binding protein	NA|313aa|up_4|NZ_CP045725.1_2623408_2624347_-	pfam10128, OpcA_G6PD_assem, Glucose-6-phosphate dehydrogenase subunit	NA|522aa|up_3|NZ_CP045725.1_2624374_2625940_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|368aa|up_2|NZ_CP045725.1_2626107_2627211_-	PRK03343, PRK03343, transaldolase; Validated	NA|720aa|up_1|NZ_CP045725.1_2627239_2629399_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|320aa|up_0|NZ_CP045725.1_2629654_2630614_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|103aa|down_0|NZ_CP045725.1_2634547_2634856_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|91aa|down_1|NZ_CP045725.1_2634869_2635142_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|507aa|down_2|NZ_CP045725.1_2635308_2636829_+	PRK12296, obgE, GTPase CgtA; Reviewed	NA|379aa|down_3|NZ_CP045725.1_2636825_2637962_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|580aa|down_4|NZ_CP045725.1_2637958_2639698_+	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|414aa|down_5|NZ_CP045725.1_2639771_2641013_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|123aa|down_6|NZ_CP045725.1_2641901_2642270_+	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|204aa|down_7|NZ_CP045725.1_2642266_2642878_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|247aa|down_8|NZ_CP045725.1_2643194_2643935_-	cd07064, AlkD_like_1, A new structural DNA glycosylase containing HEAT-like repeats	NA|280aa|down_9|NZ_CP045725.1_2645421_2646261_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
