assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	1	697175-697256	1	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA|81aa|up_4|NZ_CP043117.1_692590_692833_+,NA|125aa|down_1|NZ_CP043117.1_700440_700815_+	NA|407aa|up_9|NZ_CP043117.1_686414_687635_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|554aa|up_8|NZ_CP043117.1_687667_689329_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|300aa|up_7|NZ_CP043117.1_689344_690244_-	PRK02155, ppnK, NAD kinase	NA|335aa|up_6|NZ_CP043117.1_690358_691363_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|363aa|up_5|NZ_CP043117.1_691420_692509_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|81aa|up_4|NZ_CP043117.1_692590_692833_+	NA	NA|185aa|up_3|NZ_CP043117.1_692974_693529_+	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|127aa|up_2|NZ_CP043117.1_693536_693917_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|642aa|up_1|NZ_CP043117.1_694007_695933_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|378aa|up_0|NZ_CP043117.1_696033_697167_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|917aa|down_0|NZ_CP043117.1_697357_700108_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|125aa|down_1|NZ_CP043117.1_700440_700815_+	NA	NA|185aa|down_2|NZ_CP043117.1_700852_701407_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|391aa|down_3|NZ_CP043117.1_701410_702583_-	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_4|NZ_CP043117.1_702604_703492_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|118aa|down_5|NZ_CP043117.1_703652_704006_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|121aa|down_6|NZ_CP043117.1_704018_704381_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|142aa|down_7|NZ_CP043117.1_704431_704857_-	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|419aa|down_8|NZ_CP043117.1_705059_706316_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|321aa|down_9|NZ_CP043117.1_706533_707496_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	2	2265740-2265826	2	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	CTGTCCCCGCGGGGACAGGCACACT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|201aa|up_9|NZ_CP043117.1_2253583_2254186_+	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	NA|317aa|up_8|NZ_CP043117.1_2254325_2255276_+	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|159aa|up_7|NZ_CP043117.1_2255577_2256054_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|546aa|up_6|NZ_CP043117.1_2256677_2258315_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|438aa|up_5|NZ_CP043117.1_2258345_2259659_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|440aa|up_4|NZ_CP043117.1_2259918_2261238_+	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|570aa|up_3|NZ_CP043117.1_2261314_2263024_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|362aa|up_2|NZ_CP043117.1_2263020_2264106_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|300aa|up_1|NZ_CP043117.1_2264153_2265053_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|up_0|NZ_CP043117.1_2265063_2265708_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|255aa|down_0|NZ_CP043117.1_2265888_2266653_-	PRK07024, PRK07024, SDR family oxidoreductase	NA|407aa|down_1|NZ_CP043117.1_2266834_2268055_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1077aa|down_2|NZ_CP043117.1_2268175_2271406_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_3|NZ_CP043117.1_2271687_2272515_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_4|NZ_CP043117.1_2272548_2273244_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_5|NZ_CP043117.1_2273236_2274517_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_6|NZ_CP043117.1_2274526_2275504_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_7|NZ_CP043117.1_2275485_2277186_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_8|NZ_CP043117.1_2277288_2278393_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_9|NZ_CP043117.1_2278422_2279178_+	PRK07023, PRK07023, SDR family oxidoreductase
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	3	2566984-2567057	3	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA|237aa|up_0|NZ_CP043117.1_2566119_2566830_-,NA	NA|221aa|up_9|NZ_CP043117.1_2556907_2557570_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|496aa|up_8|NZ_CP043117.1_2557580_2559068_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|48aa|up_7|NZ_CP043117.1_2559192_2559336_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|425aa|up_6|NZ_CP043117.1_2560371_2561646_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_5|NZ_CP043117.1_2561749_2562943_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|218aa|up_4|NZ_CP043117.1_2562939_2563593_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|479aa|up_3|NZ_CP043117.1_2563589_2565026_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NZ_CP043117.1_2565013_2565373_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NZ_CP043117.1_2565365_2566109_+	pfam04172, LrgB, LrgB-like family	NA|237aa|up_0|NZ_CP043117.1_2566119_2566830_-	NA	NA|441aa|down_0|NZ_CP043117.1_2567205_2568528_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NZ_CP043117.1_2568846_2569668_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NZ_CP043117.1_2569674_2570928_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NZ_CP043117.1_2571091_2571664_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NZ_CP043117.1_2571703_2573533_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NZ_CP043117.1_2573495_2574557_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NZ_CP043117.1_2574595_2575057_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NZ_CP043117.1_2575141_2575888_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|500aa|down_8|NZ_CP043117.1_2575884_2577384_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|415aa|down_9|NZ_CP043117.1_2580658_2581903_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	4	2878722-2878796	4	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	TGCCTGTCCCCGCGGGGACAGGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|230aa|up_9|NZ_CP043117.1_2865724_2866414_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|255aa|up_8|NZ_CP043117.1_2867242_2868007_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|474aa|up_7|NZ_CP043117.1_2868045_2869467_-	PRK12637, flgE, flagellar hook protein FlgE; Provisional	NA|235aa|up_6|NZ_CP043117.1_2869532_2870237_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|140aa|up_5|NZ_CP043117.1_2870284_2870704_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|136aa|up_4|NZ_CP043117.1_2870716_2871124_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|237aa|up_3|NZ_CP043117.1_2871307_2872018_+	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|97aa|up_2|NZ_CP043117.1_2872144_2872435_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|161aa|up_1|NZ_CP043117.1_2872451_2872934_+	pfam05130, FlgN, FlgN protein	NA|385aa|up_0|NZ_CP043117.1_2877427_2878582_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|211aa|down_0|NZ_CP043117.1_2878808_2879441_-	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional	NA|130aa|down_1|NZ_CP043117.1_2879449_2879839_-	PRK10610, PRK10610, chemotaxis protein CheY	NA|351aa|down_2|NZ_CP043117.1_2879891_2880944_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|287aa|down_3|NZ_CP043117.1_2880940_2881801_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|569aa|down_4|NZ_CP043117.1_2881809_2883516_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|down_5|NZ_CP043117.1_2883589_2884090_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|686aa|down_6|NZ_CP043117.1_2884104_2886162_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional	NA|127aa|down_7|NZ_CP043117.1_2886188_2886569_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|316aa|down_8|NZ_CP043117.1_2886583_2887531_-	PRK09041, motB, motility protein MotB	NA|292aa|down_9|NZ_CP043117.1_2887543_2888419_-	PRK09110, PRK09110, flagellar motor stator protein MotA
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	5	3161552-3161679	5	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	TCAGGCTCGGGTTCAGGCTCGGG	23	1	5	3161638-3161656|3161638-3161656|3161638-3161656|3161638-3161656|3161638-3161656	NZ_CP043117.1_3161662-3161680|NZ_CP043117.1_3161674-3161692|NZ_CP043117.1_2091740-2091722|NZ_CP043117.1_2402122-2402104|NZ_CP043117.1_2459678-2459696	NA	2	2	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|407aa|up_9|NZ_CP043117.1_3148808_3150029_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1081aa|up_8|NZ_CP043117.1_3150090_3153333_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|385aa|up_7|NZ_CP043117.1_3153343_3154498_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|321aa|up_6|NZ_CP043117.1_3154724_3155687_+	PRK05269, PRK05269, transaldolase B; Provisional	NA|265aa|up_5|NZ_CP043117.1_3155728_3156523_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|270aa|up_4|NZ_CP043117.1_3156526_3157336_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|346aa|up_3|NZ_CP043117.1_3157328_3158366_-	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|417aa|up_2|NZ_CP043117.1_3158471_3159722_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|203aa|up_1|NZ_CP043117.1_3159796_3160405_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|109aa|up_0|NZ_CP043117.1_3160454_3160781_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|1135aa|down_0|NZ_CP043117.1_3163657_3167062_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|887aa|down_1|NZ_CP043117.1_3167074_3169735_-	TIGR03623, TIGR03623, probable DNA repair protein	NA|401aa|down_2|NZ_CP043117.1_3169938_3171141_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|371aa|down_3|NZ_CP043117.1_3171875_3172988_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|123aa|down_4|NZ_CP043117.1_3172994_3173363_-	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|193aa|down_5|NZ_CP043117.1_3173457_3174036_-	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|163aa|down_6|NZ_CP043117.1_3174155_3174644_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|311aa|down_7|NZ_CP043117.1_3174657_3175590_-	PRK00283, xerD, tyrosine recombinase	NA|255aa|down_8|NZ_CP043117.1_3175627_3176392_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|565aa|down_9|NZ_CP043117.1_3176549_3178244_+	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	6	3412211-3412297	6	CRISPRCasFinder	no	csa3	csa3,RT,cas3,DinG,DEDDh	Type I-A	GTCCCCGCGGGGACAGGCACCACG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA|72aa|up_3|NZ_CP043117.1_3407688_3407904_+,NA	NA|379aa|up_9|NZ_CP043117.1_3400622_3401759_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|322aa|up_8|NZ_CP043117.1_3401802_3402768_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|427aa|up_7|NZ_CP043117.1_3402808_3404089_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	csa3|109aa|up_6|NZ_CP043117.1_3404085_3404412_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|431aa|up_5|NZ_CP043117.1_3404564_3405857_+	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	NA|490aa|up_4|NZ_CP043117.1_3406208_3407678_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|72aa|up_3|NZ_CP043117.1_3407688_3407904_+	NA	NA|725aa|up_2|NZ_CP043117.1_3407881_3410056_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|481aa|up_1|NZ_CP043117.1_3410058_3411501_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|222aa|up_0|NZ_CP043117.1_3411522_3412188_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|2216aa|down_0|NZ_CP043117.1_3412422_3419070_+	NF012211, tand_rpt_95, tandem-95 repeat protein	NA|228aa|down_1|NZ_CP043117.1_3419150_3419834_+	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|659aa|down_2|NZ_CP043117.1_3419849_3421826_+	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain	NA|209aa|down_3|NZ_CP043117.1_3421874_3422501_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|231aa|down_4|NZ_CP043117.1_3423955_3424648_-	PRK10119, PRK10119, putative hydrolase; Provisional	NA|832aa|down_5|NZ_CP043117.1_3424696_3427192_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|123aa|down_6|NZ_CP043117.1_3427291_3427660_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|309aa|down_7|NZ_CP043117.1_3427946_3428873_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|145aa|down_8|NZ_CP043117.1_3429931_3430366_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|263aa|down_9|NZ_CP043117.1_3431488_3432277_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	7	3920607-3920691	7	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|585aa|up_9|NZ_CP043117.1_3908567_3910322_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|299aa|up_8|NZ_CP043117.1_3910428_3911325_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|NZ_CP043117.1_3911389_3912373_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP043117.1_3912508_3913489_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP043117.1_3913505_3914897_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP043117.1_3915048_3915585_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP043117.1_3915515_3916901_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP043117.1_3917043_3917682_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|NZ_CP043117.1_3917768_3919658_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP043117.1_3919654_3920596_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP043117.1_3920701_3921751_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP043117.1_3922003_3922705_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP043117.1_3922701_3923400_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP043117.1_3923400_3924756_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP043117.1_3924752_3925244_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP043117.1_3925262_3926219_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|465aa|down_6|NZ_CP043117.1_3926245_3927640_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|701aa|down_7|NZ_CP043117.1_3927636_3929739_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|347aa|down_8|NZ_CP043117.1_3929909_3930950_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_9|NZ_CP043117.1_3930993_3931737_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_009626795.1_ASM962679v1	NZ_CP043117	Bordetella parapertussis strain I267 chromosome, complete genome	8	4131319-4131412	8	CRISPRCasFinder	no	DEDDh	csa3,RT,cas3,DinG,DEDDh	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|398aa|up_9|NZ_CP043117.1_4119744_4120938_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_CP043117.1_4121003_4122032_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NZ_CP043117.1_4122058_4123231_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|306aa|up_6|NZ_CP043117.1_4123416_4124334_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP043117.1_4124344_4125316_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP043117.1_4125382_4126168_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|410aa|up_3|NZ_CP043117.1_4126164_4127394_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP043117.1_4127589_4128345_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP043117.1_4128455_4128974_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|706aa|up_0|NZ_CP043117.1_4128970_4131088_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|407aa|down_0|NZ_CP043117.1_4131449_4132670_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|down_1|NZ_CP043117.1_4132812_4133283_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_2|NZ_CP043117.1_4133371_4133716_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|482aa|down_3|NZ_CP043117.1_4133815_4135261_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP043117.1_4135404_4136319_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_5|NZ_CP043117.1_4136315_4136975_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_6|NZ_CP043117.1_4137064_4137988_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_7|NZ_CP043117.1_4137993_4138449_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_8|NZ_CP043117.1_4138445_4139549_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|91aa|down_9|NZ_CP043117.1_4139504_4139777_+	pfam04138, GtrA, GtrA-like protein
