assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	1	822594-822750	1	PILER-CR	no		csa3,RT,cas3,DEDDh,DinG	Orphan	GGCATCTGCCCGTGCGTGTGCCTGTCCCCGCTGGGACAGGCACATTGCCGTA	52	1	2	822708-822731|822708-822731	NZ_CP043090.1_822570-822593|NZ_CP043090.1_822780-822803	NA	2	2	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|188aa|up_9|NZ_CP043090.1_809771_810335_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|141aa|up_8|NZ_CP043090.1_810342_810765_-	cd08355, TioX_like, Micromonospora sp	NA|140aa|up_7|NZ_CP043090.1_810792_811212_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|173aa|up_6|NZ_CP043090.1_811240_811759_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|757aa|up_5|NZ_CP043090.1_812463_814734_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|402aa|up_4|NZ_CP043090.1_814809_816015_+	pfam03486, HI0933_like, HI0933-like protein	NA|212aa|up_3|NZ_CP043090.1_816117_816753_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|367aa|up_2|NZ_CP043090.1_818042_819143_+	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|125aa|up_1|NZ_CP043090.1_819224_819599_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|955aa|up_0|NZ_CP043090.1_819658_822523_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|247aa|down_0|NZ_CP043090.1_822982_823723_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|404aa|down_1|NZ_CP043090.1_823792_825004_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|323aa|down_2|NZ_CP043090.1_825032_826001_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|278aa|down_3|NZ_CP043090.1_825997_826831_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|675aa|down_4|NZ_CP043090.1_826881_828906_-	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|483aa|down_5|NZ_CP043090.1_829033_830482_-	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|492aa|down_6|NZ_CP043090.1_830657_832133_-	pfam07364, DUF1485, Metallopeptidase family M81	NA|553aa|down_7|NZ_CP043090.1_832176_833835_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|300aa|down_8|NZ_CP043090.1_833838_834738_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|314aa|down_9|NZ_CP043090.1_834740_835682_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	2	1052537-1052623	1	CRISPRCasFinder	no	csa3	csa3,RT,cas3,DEDDh,DinG	Type I-A	CGTGGTGCCTGTCCCCGCGGGGAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA|72aa|down_3|NZ_CP043090.1_1056929_1057145_-	NA|263aa|up_9|NZ_CP043090.1_1032556_1033345_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|145aa|up_8|NZ_CP043090.1_1034467_1034902_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|309aa|up_7|NZ_CP043090.1_1035960_1036887_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|123aa|up_6|NZ_CP043090.1_1037173_1037542_+	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|832aa|up_5|NZ_CP043090.1_1037641_1040137_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|231aa|up_4|NZ_CP043090.1_1040185_1040878_+	PRK10119, PRK10119, putative hydrolase; Provisional	NA|209aa|up_3|NZ_CP043090.1_1042332_1042959_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|659aa|up_2|NZ_CP043090.1_1043007_1044984_-	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain	NA|228aa|up_1|NZ_CP043090.1_1044999_1045683_-	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|2216aa|up_0|NZ_CP043090.1_1045763_1052411_-	NF012211, tand_rpt_95, tandem-95 repeat protein	NA|222aa|down_0|NZ_CP043090.1_1052645_1053311_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|481aa|down_1|NZ_CP043090.1_1053332_1054775_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|725aa|down_2|NZ_CP043090.1_1054777_1056952_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|72aa|down_3|NZ_CP043090.1_1056929_1057145_-	NA	NA|490aa|down_4|NZ_CP043090.1_1057155_1058625_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|431aa|down_5|NZ_CP043090.1_1058976_1060269_-	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	csa3|109aa|down_6|NZ_CP043090.1_1060421_1060748_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|427aa|down_7|NZ_CP043090.1_1060744_1062025_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|322aa|down_8|NZ_CP043090.1_1062065_1063031_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|379aa|down_9|NZ_CP043090.1_1063074_1064211_-	pfam02515, CoA_transf_3, CoA-transferase family III
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	3	2469013-2469099	2	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACACT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|201aa|up_9|NZ_CP043090.1_2456856_2457459_+	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	NA|317aa|up_8|NZ_CP043090.1_2457598_2458549_+	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|159aa|up_7|NZ_CP043090.1_2458850_2459327_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|546aa|up_6|NZ_CP043090.1_2459950_2461588_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|438aa|up_5|NZ_CP043090.1_2461618_2462932_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|440aa|up_4|NZ_CP043090.1_2463191_2464511_+	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|570aa|up_3|NZ_CP043090.1_2464587_2466297_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|362aa|up_2|NZ_CP043090.1_2466293_2467379_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|300aa|up_1|NZ_CP043090.1_2467426_2468326_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|up_0|NZ_CP043090.1_2468336_2468981_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|255aa|down_0|NZ_CP043090.1_2469161_2469926_-	PRK07024, PRK07024, SDR family oxidoreductase	NA|407aa|down_1|NZ_CP043090.1_2470107_2471328_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1077aa|down_2|NZ_CP043090.1_2471448_2474679_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_3|NZ_CP043090.1_2474960_2475788_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_4|NZ_CP043090.1_2475821_2476517_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_5|NZ_CP043090.1_2476509_2477790_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_6|NZ_CP043090.1_2477799_2478777_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_7|NZ_CP043090.1_2478758_2480459_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_8|NZ_CP043090.1_2480561_2481666_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_9|NZ_CP043090.1_2481695_2482451_+	PRK07023, PRK07023, SDR family oxidoreductase
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	4	2770254-2770327	3	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA|237aa|up_0|NZ_CP043090.1_2769389_2770100_-,NA	NA|221aa|up_9|NZ_CP043090.1_2760177_2760840_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|496aa|up_8|NZ_CP043090.1_2760850_2762338_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|48aa|up_7|NZ_CP043090.1_2762462_2762606_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|425aa|up_6|NZ_CP043090.1_2763641_2764916_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_5|NZ_CP043090.1_2765019_2766213_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|218aa|up_4|NZ_CP043090.1_2766209_2766863_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|479aa|up_3|NZ_CP043090.1_2766859_2768296_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NZ_CP043090.1_2768283_2768643_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NZ_CP043090.1_2768635_2769379_+	pfam04172, LrgB, LrgB-like family	NA|237aa|up_0|NZ_CP043090.1_2769389_2770100_-	NA	NA|441aa|down_0|NZ_CP043090.1_2770475_2771798_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NZ_CP043090.1_2772116_2772938_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NZ_CP043090.1_2772944_2774198_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NZ_CP043090.1_2774361_2774934_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NZ_CP043090.1_2774973_2776803_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NZ_CP043090.1_2776765_2777827_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NZ_CP043090.1_2777865_2778327_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NZ_CP043090.1_2778411_2779158_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|500aa|down_8|NZ_CP043090.1_2779154_2780654_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|415aa|down_9|NZ_CP043090.1_2783928_2785173_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	5	3081992-3082066	4	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	TGCCTGTCCCCGCGGGGACAGGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|230aa|up_9|NZ_CP043090.1_3068994_3069684_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|255aa|up_8|NZ_CP043090.1_3070512_3071277_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|474aa|up_7|NZ_CP043090.1_3071315_3072737_-	PRK12637, flgE, flagellar hook protein FlgE; Provisional	NA|235aa|up_6|NZ_CP043090.1_3072802_3073507_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|140aa|up_5|NZ_CP043090.1_3073554_3073974_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|136aa|up_4|NZ_CP043090.1_3073986_3074394_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|237aa|up_3|NZ_CP043090.1_3074577_3075288_+	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|97aa|up_2|NZ_CP043090.1_3075414_3075705_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|161aa|up_1|NZ_CP043090.1_3075721_3076204_+	pfam05130, FlgN, FlgN protein	NA|385aa|up_0|NZ_CP043090.1_3080697_3081852_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|211aa|down_0|NZ_CP043090.1_3082078_3082711_-	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional	NA|130aa|down_1|NZ_CP043090.1_3082719_3083109_-	PRK10610, PRK10610, chemotaxis protein CheY	NA|351aa|down_2|NZ_CP043090.1_3083161_3084214_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|287aa|down_3|NZ_CP043090.1_3084210_3085071_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|569aa|down_4|NZ_CP043090.1_3085079_3086786_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|down_5|NZ_CP043090.1_3086859_3087360_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|686aa|down_6|NZ_CP043090.1_3087374_3089432_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional	NA|127aa|down_7|NZ_CP043090.1_3089458_3089839_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|316aa|down_8|NZ_CP043090.1_3089853_3090801_-	PRK09041, motB, motility protein MotB	NA|292aa|down_9|NZ_CP043090.1_3090813_3091689_-	PRK09110, PRK09110, flagellar motor stator protein MotA
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	6	3767623-3767704	5	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	CTGTCCCCGCCGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA|125aa|up_1|NZ_CP043090.1_3764063_3764438_-,NA|81aa|down_4|NZ_CP043090.1_3772045_3772288_-	NA|321aa|up_9|NZ_CP043090.1_3757382_3758345_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|419aa|up_8|NZ_CP043090.1_3758562_3759819_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|142aa|up_7|NZ_CP043090.1_3760021_3760447_+	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|121aa|up_6|NZ_CP043090.1_3760497_3760860_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|118aa|up_5|NZ_CP043090.1_3760872_3761226_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|296aa|up_4|NZ_CP043090.1_3761386_3762274_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|391aa|up_3|NZ_CP043090.1_3762295_3763468_+	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|185aa|up_2|NZ_CP043090.1_3763471_3764026_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|125aa|up_1|NZ_CP043090.1_3764063_3764438_-	NA	NA|917aa|up_0|NZ_CP043090.1_3764770_3767521_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|378aa|down_0|NZ_CP043090.1_3767711_3768845_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|down_1|NZ_CP043090.1_3768945_3770871_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|127aa|down_2|NZ_CP043090.1_3770961_3771342_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|185aa|down_3|NZ_CP043090.1_3771349_3771904_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|81aa|down_4|NZ_CP043090.1_3772045_3772288_-	NA	NA|363aa|down_5|NZ_CP043090.1_3772369_3773458_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|335aa|down_6|NZ_CP043090.1_3773515_3774520_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|down_7|NZ_CP043090.1_3774634_3775534_+	PRK02155, ppnK, NAD kinase	NA|554aa|down_8|NZ_CP043090.1_3775549_3777211_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|407aa|down_9|NZ_CP043090.1_3777243_3778464_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	7	3920648-3920732	6	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|585aa|up_9|NZ_CP043090.1_3908608_3910363_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|299aa|up_8|NZ_CP043090.1_3910469_3911366_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|NZ_CP043090.1_3911430_3912414_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP043090.1_3912549_3913530_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP043090.1_3913546_3914938_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP043090.1_3915089_3915626_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP043090.1_3915556_3916942_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP043090.1_3917084_3917723_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|NZ_CP043090.1_3917809_3919699_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP043090.1_3919695_3920637_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP043090.1_3920742_3921792_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP043090.1_3922044_3922746_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP043090.1_3922742_3923441_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP043090.1_3923441_3924797_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP043090.1_3924793_3925285_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP043090.1_3925303_3926260_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|465aa|down_6|NZ_CP043090.1_3926286_3927681_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|701aa|down_7|NZ_CP043090.1_3927677_3929780_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|347aa|down_8|NZ_CP043090.1_3929950_3930991_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_9|NZ_CP043090.1_3931034_3931778_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_009626295.1_ASM962629v1	NZ_CP043090	Bordetella parapertussis strain J282 chromosome, complete genome	8	4131339-4131432	7	CRISPRCasFinder	no	DEDDh	csa3,RT,cas3,DEDDh,DinG	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|398aa|up_9|NZ_CP043090.1_4119764_4120958_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_CP043090.1_4121023_4122052_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NZ_CP043090.1_4122078_4123251_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|306aa|up_6|NZ_CP043090.1_4123436_4124354_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP043090.1_4124364_4125336_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP043090.1_4125402_4126188_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|410aa|up_3|NZ_CP043090.1_4126184_4127414_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP043090.1_4127609_4128365_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP043090.1_4128475_4128994_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|706aa|up_0|NZ_CP043090.1_4128990_4131108_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|407aa|down_0|NZ_CP043090.1_4131469_4132690_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|down_1|NZ_CP043090.1_4132832_4133303_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_2|NZ_CP043090.1_4133391_4133736_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|482aa|down_3|NZ_CP043090.1_4133835_4135281_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP043090.1_4135424_4136339_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_5|NZ_CP043090.1_4136335_4136995_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_6|NZ_CP043090.1_4137084_4138008_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_7|NZ_CP043090.1_4138013_4138469_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_8|NZ_CP043090.1_4138465_4139569_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|91aa|down_9|NZ_CP043090.1_4139524_4139797_+	pfam04138, GtrA, GtrA-like protein
