assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009626135.1_ASM962613v1	NZ_CP043082	Bordetella parapertussis strain J297 chromosome, complete genome	1	697177-697258	1	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA|81aa|up_4|NZ_CP043082.1_692592_692835_+,NA|125aa|down_1|NZ_CP043082.1_700442_700817_+	NA|407aa|up_9|NZ_CP043082.1_686416_687637_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|554aa|up_8|NZ_CP043082.1_687669_689331_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|300aa|up_7|NZ_CP043082.1_689346_690246_-	PRK02155, ppnK, NAD kinase	NA|335aa|up_6|NZ_CP043082.1_690360_691365_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|363aa|up_5|NZ_CP043082.1_691422_692511_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|81aa|up_4|NZ_CP043082.1_692592_692835_+	NA	NA|185aa|up_3|NZ_CP043082.1_692976_693531_+	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|127aa|up_2|NZ_CP043082.1_693538_693919_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|642aa|up_1|NZ_CP043082.1_694009_695935_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|378aa|up_0|NZ_CP043082.1_696035_697169_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|917aa|down_0|NZ_CP043082.1_697359_700110_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|125aa|down_1|NZ_CP043082.1_700442_700817_+	NA	NA|185aa|down_2|NZ_CP043082.1_700854_701409_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|391aa|down_3|NZ_CP043082.1_701412_702585_-	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_4|NZ_CP043082.1_702606_703494_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|118aa|down_5|NZ_CP043082.1_703654_704008_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|121aa|down_6|NZ_CP043082.1_704020_704383_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|142aa|down_7|NZ_CP043082.1_704433_704859_-	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|419aa|down_8|NZ_CP043082.1_705061_706318_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|321aa|down_9|NZ_CP043082.1_706535_707498_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins
GCF_009626135.1_ASM962613v1	NZ_CP043082	Bordetella parapertussis strain J297 chromosome, complete genome	2	1995785-1995871	2	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	AGTGTGCCTGTCCCCGCAGGGACAG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|252aa|up_9|NZ_CP043082.1_1982432_1983188_-	PRK07023, PRK07023, SDR family oxidoreductase	NA|368aa|up_8|NZ_CP043082.1_1983217_1984322_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|567aa|up_7|NZ_CP043082.1_1984424_1986125_-	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|326aa|up_6|NZ_CP043082.1_1986106_1987084_-	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|427aa|up_5|NZ_CP043082.1_1987093_1988374_+	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|232aa|up_4|NZ_CP043082.1_1988366_1989062_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|276aa|up_3|NZ_CP043082.1_1989095_1989923_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|1077aa|up_2|NZ_CP043082.1_1990204_1993435_+	pfam03797, Autotransporter, Autotransporter beta-domain	NA|407aa|up_1|NZ_CP043082.1_1993555_1994776_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|255aa|up_0|NZ_CP043082.1_1994957_1995722_+	PRK07024, PRK07024, SDR family oxidoreductase	NA|215aa|down_0|NZ_CP043082.1_1995902_1996547_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|300aa|down_1|NZ_CP043082.1_1996557_1997457_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|362aa|down_2|NZ_CP043082.1_1997504_1998590_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|570aa|down_3|NZ_CP043082.1_1998586_2000296_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|440aa|down_4|NZ_CP043082.1_2000372_2001692_-	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|438aa|down_5|NZ_CP043082.1_2001951_2003265_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|546aa|down_6|NZ_CP043082.1_2003295_2004933_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|159aa|down_7|NZ_CP043082.1_2005556_2006033_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|317aa|down_8|NZ_CP043082.1_2006334_2007285_-	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|201aa|down_9|NZ_CP043082.1_2007424_2008027_-	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
GCF_009626135.1_ASM962613v1	NZ_CP043082	Bordetella parapertussis strain J297 chromosome, complete genome	3	2888397-2888493	3	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	GTGCCTGTCCCGGCGGGGACAGGCACCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA|120aa|up_1|NZ_CP043082.1_2885547_2885907_-,NA|139aa|down_2|NZ_CP043082.1_2891439_2891856_-	NA|425aa|up_9|NZ_CP043082.1_2875310_2876585_-	pfam06864, PAP_PilO, Pilin accessory protein (PilO)	NA|526aa|up_8|NZ_CP043082.1_2876588_2878166_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|254aa|up_7|NZ_CP043082.1_2878162_2878924_-	cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type IV secretion system	NA|452aa|up_6|NZ_CP043082.1_2879101_2880457_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|545aa|up_5|NZ_CP043082.1_2880453_2882088_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|277aa|up_4|NZ_CP043082.1_2882080_2882911_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|315aa|up_3|NZ_CP043082.1_2882928_2883873_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|525aa|up_2|NZ_CP043082.1_2883925_2885500_-	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|120aa|up_1|NZ_CP043082.1_2885547_2885907_-	NA	NA|317aa|up_0|NZ_CP043082.1_2887372_2888323_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|407aa|down_0|NZ_CP043082.1_2888554_2889775_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|483aa|down_1|NZ_CP043082.1_2889962_2891411_+	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|139aa|down_2|NZ_CP043082.1_2891439_2891856_-	NA	NA|511aa|down_3|NZ_CP043082.1_2892113_2893646_+	TIGR02095, Glycogen_synthase, glycogen/starch synthase, ADP-glucose type	NA|732aa|down_4|NZ_CP043082.1_2900195_2902391_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|673aa|down_5|NZ_CP043082.1_2906263_2908282_+	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|991aa|down_6|NZ_CP043082.1_2910810_2913783_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|285aa|down_7|NZ_CP043082.1_2913883_2914738_-	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase	NA|268aa|down_8|NZ_CP043082.1_2914734_2915538_-	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|444aa|down_9|NZ_CP043082.1_2915597_2916929_+	PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional
GCF_009626135.1_ASM962613v1	NZ_CP043082	Bordetella parapertussis strain J297 chromosome, complete genome	4	3161559-3161686	4	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	TCAGGCTCGGGTTCAGGCTCGGG	23	1	5	3161645-3161663|3161645-3161663|3161645-3161663|3161645-3161663|3161645-3161663	NZ_CP043082.1_3161669-3161687|NZ_CP043082.1_3161681-3161699|NZ_CP043082.1_1801937-1801919|NZ_CP043082.1_1859493-1859511|NZ_CP043082.1_2169871-2169889	NA	2	2	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|407aa|up_9|NZ_CP043082.1_3148815_3150036_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1081aa|up_8|NZ_CP043082.1_3150097_3153340_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|385aa|up_7|NZ_CP043082.1_3153350_3154505_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|321aa|up_6|NZ_CP043082.1_3154731_3155694_+	PRK05269, PRK05269, transaldolase B; Provisional	NA|265aa|up_5|NZ_CP043082.1_3155735_3156530_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|270aa|up_4|NZ_CP043082.1_3156533_3157343_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|346aa|up_3|NZ_CP043082.1_3157335_3158373_-	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|417aa|up_2|NZ_CP043082.1_3158478_3159729_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|203aa|up_1|NZ_CP043082.1_3159803_3160412_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|109aa|up_0|NZ_CP043082.1_3160461_3160788_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|1135aa|down_0|NZ_CP043082.1_3163664_3167069_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|887aa|down_1|NZ_CP043082.1_3167081_3169742_-	TIGR03623, TIGR03623, probable DNA repair protein	NA|401aa|down_2|NZ_CP043082.1_3169945_3171148_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|371aa|down_3|NZ_CP043082.1_3171882_3172995_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|123aa|down_4|NZ_CP043082.1_3173001_3173370_-	COG4321, COG4321, Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]	NA|193aa|down_5|NZ_CP043082.1_3173464_3174043_-	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|163aa|down_6|NZ_CP043082.1_3174162_3174651_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|311aa|down_7|NZ_CP043082.1_3174664_3175597_-	PRK00283, xerD, tyrosine recombinase	NA|255aa|down_8|NZ_CP043082.1_3175634_3176399_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|565aa|down_9|NZ_CP043082.1_3176556_3178251_+	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated
GCF_009626135.1_ASM962613v1	NZ_CP043082	Bordetella parapertussis strain J297 chromosome, complete genome	5	3412261-3412347	5	CRISPRCasFinder	no	csa3	csa3,RT,cas3,DinG,DEDDh	Type I-A	GTCCCCGCGGGGACAGGCACCACG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA|72aa|up_3|NZ_CP043082.1_3407738_3407954_+,NA	NA|379aa|up_9|NZ_CP043082.1_3400672_3401809_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|322aa|up_8|NZ_CP043082.1_3401852_3402818_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|427aa|up_7|NZ_CP043082.1_3402858_3404139_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	csa3|109aa|up_6|NZ_CP043082.1_3404135_3404462_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|431aa|up_5|NZ_CP043082.1_3404614_3405907_+	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	NA|490aa|up_4|NZ_CP043082.1_3406258_3407728_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|72aa|up_3|NZ_CP043082.1_3407738_3407954_+	NA	NA|725aa|up_2|NZ_CP043082.1_3407931_3410106_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|481aa|up_1|NZ_CP043082.1_3410108_3411551_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|222aa|up_0|NZ_CP043082.1_3411572_3412238_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|2216aa|down_0|NZ_CP043082.1_3412472_3419120_+	NF012211, tand_rpt_95, tandem-95 repeat protein	NA|228aa|down_1|NZ_CP043082.1_3419200_3419884_+	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|659aa|down_2|NZ_CP043082.1_3419899_3421876_+	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain	NA|209aa|down_3|NZ_CP043082.1_3421924_3422551_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|231aa|down_4|NZ_CP043082.1_3424005_3424698_-	PRK10119, PRK10119, putative hydrolase; Provisional	NA|832aa|down_5|NZ_CP043082.1_3424746_3427242_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|123aa|down_6|NZ_CP043082.1_3427341_3427710_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|309aa|down_7|NZ_CP043082.1_3427996_3428923_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|145aa|down_8|NZ_CP043082.1_3429981_3430416_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|263aa|down_9|NZ_CP043082.1_3431538_3432327_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters
GCF_009626135.1_ASM962613v1	NZ_CP043082	Bordetella parapertussis strain J297 chromosome, complete genome	6	3920657-3920741	6	CRISPRCasFinder	no		csa3,RT,cas3,DinG,DEDDh	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|585aa|up_9|NZ_CP043082.1_3908617_3910372_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|299aa|up_8|NZ_CP043082.1_3910478_3911375_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|NZ_CP043082.1_3911439_3912423_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP043082.1_3912558_3913539_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP043082.1_3913555_3914947_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP043082.1_3915098_3915635_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP043082.1_3915565_3916951_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP043082.1_3917093_3917732_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|NZ_CP043082.1_3917818_3919708_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP043082.1_3919704_3920646_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP043082.1_3920751_3921801_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP043082.1_3922053_3922755_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP043082.1_3922751_3923450_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP043082.1_3923450_3924806_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP043082.1_3924802_3925294_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP043082.1_3925312_3926269_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|465aa|down_6|NZ_CP043082.1_3926295_3927690_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|701aa|down_7|NZ_CP043082.1_3927686_3929789_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|347aa|down_8|NZ_CP043082.1_3929959_3931000_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_9|NZ_CP043082.1_3931043_3931787_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_009626135.1_ASM962613v1	NZ_CP043082	Bordetella parapertussis strain J297 chromosome, complete genome	7	4131347-4131440	7	CRISPRCasFinder	no	DEDDh	csa3,RT,cas3,DinG,DEDDh	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DinG,DEDDh	NA,NA	NA|398aa|up_9|NZ_CP043082.1_4119772_4120966_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_CP043082.1_4121031_4122060_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NZ_CP043082.1_4122086_4123259_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|306aa|up_6|NZ_CP043082.1_4123444_4124362_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP043082.1_4124372_4125344_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP043082.1_4125410_4126196_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|410aa|up_3|NZ_CP043082.1_4126192_4127422_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP043082.1_4127617_4128373_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP043082.1_4128483_4129002_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|706aa|up_0|NZ_CP043082.1_4128998_4131116_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|407aa|down_0|NZ_CP043082.1_4131477_4132698_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|down_1|NZ_CP043082.1_4132840_4133311_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_2|NZ_CP043082.1_4133399_4133744_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|482aa|down_3|NZ_CP043082.1_4133843_4135289_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP043082.1_4135432_4136347_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_5|NZ_CP043082.1_4136343_4137003_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_6|NZ_CP043082.1_4137092_4138016_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_7|NZ_CP043082.1_4138021_4138477_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_8|NZ_CP043082.1_4138473_4139577_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|91aa|down_9|NZ_CP043082.1_4139532_4139805_+	pfam04138, GtrA, GtrA-like protein
