assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009498435.1_ASM949843v1	NZ_CP045646	Bifidobacterium breve strain JSRL01 chromosome, complete genome	1	1646212-1647191	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGA,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,28,33	0	0	NA	NA	I-C:I-C:I-C	14,14,13	14	TypeI-U?,TypeI-U,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_2|NZ_CP045646.1_1655203_1655437_-	NA|238aa|up_9|NZ_CP045646.1_1632734_1633448_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP045646.1_1633507_1635082_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP045646.1_1635135_1635831_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP045646.1_1635851_1636604_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP045646.1_1636651_1638961_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP045646.1_1639205_1639910_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP045646.1_1640048_1641062_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP045646.1_1641356_1643219_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP045646.1_1643385_1643670_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP045646.1_1643955_1645176_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|486aa|down_0|NZ_CP045646.1_1647346_1648804_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|down_1|NZ_CP045646.1_1648800_1649562_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_2|NZ_CP045646.1_1655203_1655437_-	NA	cas2|97aa|down_3|NZ_CP045646.1_1655901_1656192_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_4|NZ_CP045646.1_1656248_1657280_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_5|NZ_CP045646.1_1657281_1657971_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_6|NZ_CP045646.1_1658009_1658861_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_7|NZ_CP045646.1_1658864_1660823_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_8|NZ_CP045646.1_1660825_1661530_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|181aa|down_9|NZ_CP045646.1_1664633_1665176_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3
GCF_009498435.1_ASM949843v1	NZ_CP045646	Bifidobacterium breve strain JSRL01 chromosome, complete genome	2	1651375-1654379	2,2,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	44,43,21	44	TypeI-U?,TypeI-U,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP045646.1_1655203_1655437_-	NA|232aa|up_9|NZ_CP045646.1_1635135_1635831_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_8|NZ_CP045646.1_1635851_1636604_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_7|NZ_CP045646.1_1636651_1638961_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_6|NZ_CP045646.1_1639205_1639910_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_5|NZ_CP045646.1_1640048_1641062_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_4|NZ_CP045646.1_1641356_1643219_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_3|NZ_CP045646.1_1643385_1643670_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_2|NZ_CP045646.1_1643955_1645176_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|486aa|up_1|NZ_CP045646.1_1647346_1648804_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|up_0|NZ_CP045646.1_1648800_1649562_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_0|NZ_CP045646.1_1655203_1655437_-	NA	cas2|97aa|down_1|NZ_CP045646.1_1655901_1656192_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP045646.1_1656248_1657280_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP045646.1_1657281_1657971_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP045646.1_1658009_1658861_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP045646.1_1658864_1660823_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP045646.1_1660825_1661530_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|181aa|down_7|NZ_CP045646.1_1664633_1665176_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|1103aa|down_8|NZ_CP045646.1_1665593_1668902_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|322aa|down_9|NZ_CP045646.1_1669574_1670540_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP
GCF_009498435.1_ASM949843v1	NZ_CP045646	Bifidobacterium breve strain JSRL01 chromosome, complete genome	3	2010638-2010784	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|700aa|up_3|NZ_CP045646.1_2005833_2007933_+,NA|318aa|down_0|NZ_CP045646.1_2010898_2011852_+	NA|145aa|up_9|NZ_CP045646.1_1989260_1989695_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3161aa|up_8|NZ_CP045646.1_1990571_2000054_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP045646.1_2000093_2001716_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP045646.1_2001708_2003589_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP045646.1_2004101_2004701_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP045646.1_2004702_2005662_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP045646.1_2005833_2007933_+	NA	NA|286aa|up_2|NZ_CP045646.1_2008011_2008869_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP045646.1_2009142_2009835_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP045646.1_2009850_2010282_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP045646.1_2010898_2011852_+	NA	NA|276aa|down_1|NZ_CP045646.1_2012207_2013035_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP045646.1_2013067_2013295_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP045646.1_2013624_2014830_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP045646.1_2014971_2016234_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP045646.1_2016329_2017463_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP045646.1_2017568_2019260_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP045646.1_2019326_2019578_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP045646.1_2019600_2019909_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1006aa|down_9|NZ_CP045646.1_2020095_2023113_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_009498435.1_ASM949843v1	NZ_CP045646	Bifidobacterium breve strain JSRL01 chromosome, complete genome	4	2158278-2158354	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCCAACCAATCGAAGAACCACCCCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|224aa|up_9|NZ_CP045646.1_2141007_2141679_+,NA|116aa|up_8|NZ_CP045646.1_2141669_2142017_+,NA	NA|224aa|up_9|NZ_CP045646.1_2141007_2141679_+	NA	NA|116aa|up_8|NZ_CP045646.1_2141669_2142017_+	NA	NA|350aa|up_7|NZ_CP045646.1_2142137_2143187_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_6|NZ_CP045646.1_2143816_2145235_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_5|NZ_CP045646.1_2145339_2146281_+	pfam02424, ApbE, ApbE family	NA|610aa|up_4|NZ_CP045646.1_2146289_2148119_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_3|NZ_CP045646.1_2148250_2150119_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|508aa|up_2|NZ_CP045646.1_2151748_2153272_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP045646.1_2153525_2157284_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP045646.1_2157293_2157995_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP045646.1_2158476_2159949_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP045646.1_2160000_2160606_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP045646.1_2160757_2161600_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP045646.1_2161599_2162454_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP045646.1_2162824_2163841_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP045646.1_2164048_2165377_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP045646.1_2165797_2166496_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP045646.1_2166582_2166960_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP045646.1_2167055_2167823_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP045646.1_2167988_2170736_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
