assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	1	200391-206825	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Type I-E	GCGTTCCCCACGCCAGTGGGGATGAACCG,GCGTTCCCCACGCCAGTGGGGATGAACCG,GCGTTCCCCACGCCAGTGGGGATGAACCGN	29,29,30	0	0	NA	NA	I-E:I-E:I-E	104,104,105	105	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA|78aa|up_5|NZ_CP044205.1_197724_197958_+,NA	cse2gr11|170aa|up_9|NZ_CP044205.1_194486_194996_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|357aa|up_8|NZ_CP044205.1_195041_196112_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|255aa|up_7|NZ_CP044205.1_196117_196882_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|266aa|up_6|NZ_CP044205.1_196887_197685_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	NA|78aa|up_5|NZ_CP044205.1_197724_197958_+	NA	NA|80aa|up_4|NZ_CP044205.1_197954_198194_+	cd12870, MqsA, antitoxin MqsA for MqsR toxin	NA|141aa|up_3|NZ_CP044205.1_198243_198666_-	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|85aa|up_2|NZ_CP044205.1_198665_198920_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	cas1|304aa|up_1|NZ_CP044205.1_199037_199949_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|101aa|up_0|NZ_CP044205.1_199929_200232_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|142aa|down_0|NZ_CP044205.1_207156_207582_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|387aa|down_1|NZ_CP044205.1_207601_208762_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|293aa|down_2|NZ_CP044205.1_208758_209637_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|539aa|down_3|NZ_CP044205.1_209633_211250_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|9267aa|down_4|NZ_CP044205.1_211648_239449_-	PRK12316, PRK12316, peptide synthase; Provisional	NA|79aa|down_5|NZ_CP044205.1_239498_239735_-	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|526aa|down_6|NZ_CP044205.1_240078_241656_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|515aa|down_7|NZ_CP044205.1_241965_243510_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|385aa|down_8|NZ_CP044205.1_243514_244669_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1021aa|down_9|NZ_CP044205.1_244665_247728_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	2	648565-648649	2	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Orphan	GGTCATTCTCAAATAATGTGGGT	23	1	5	648588-648626|648588-648626|648588-648626|648588-648626|648588-648626	NZ_CP044205.1_645014-644976|NZ_CP044205.1_2206043-2206005|NZ_CP044205.1_3298661-3298623|NZ_CP044205.1_3692531-3692493|NZ_CP044205.1_4003007-4002969	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA,NA|134aa|down_2|NZ_CP044205.1_652026_652428_-	NA|546aa|up_9|NZ_CP044205.1_633591_635229_-	TIGR03362, VI_chp_7, type VI secretion-associated protein, VC_A0119 family	NA|470aa|up_8|NZ_CP044205.1_635289_636699_-	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional	NA|329aa|up_7|NZ_CP044205.1_636762_637749_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|240aa|up_6|NZ_CP044205.1_637792_638512_-	pfam01738, DLH, Dienelactone hydrolase family	NA|156aa|up_5|NZ_CP044205.1_638783_639251_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|504aa|up_4|NZ_CP044205.1_639691_641203_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|1182aa|up_3|NZ_CP044205.1_641384_644930_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|326aa|up_2|NZ_CP044205.1_645134_646112_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|561aa|up_1|NZ_CP044205.1_646096_647779_-	pfam00665, rve, Integrase core domain	NA|192aa|up_0|NZ_CP044205.1_647753_648329_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|422aa|down_0|NZ_CP044205.1_649991_651257_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|80aa|down_1|NZ_CP044205.1_651621_651861_-	pfam00839, Cys_rich_FGFR, Cysteine rich repeat	NA|134aa|down_2|NZ_CP044205.1_652026_652428_-	NA	NA|263aa|down_3|NZ_CP044205.1_652529_653318_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|232aa|down_4|NZ_CP044205.1_653410_654106_+	pfam09209, DUF1956, Domain of unknown function (DUF1956)	NA|370aa|down_5|NZ_CP044205.1_654115_655225_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1020aa|down_6|NZ_CP044205.1_655221_658281_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|524aa|down_7|NZ_CP044205.1_658277_659849_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|257aa|down_8|NZ_CP044205.1_659944_660715_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|328aa|down_9|NZ_CP044205.1_661505_662489_+	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	3	1255627-1257876	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Type I-U, Type I-U?,Type I-C	GCATCTCCCGGCATTTATGCCGGGAGTGGATTGAAAC,GCATCTCCCGGCATTTATGCCGGGAGTGGATTGAAAC,GCATCTCCCGGCATTTATGCCGGGAGTGGATTGAAAC	37,37,37	1	1	1256736-1256769	NZ_CP044205.1_1315908-1315941	I-C:I-C:I-C	31,31,31	31	TypeI-U,TypeI-U?,TypeI-C	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA|65aa|up_9|NZ_CP044205.1_1246254_1246449_+,NA	NA|65aa|up_9|NZ_CP044205.1_1246254_1246449_+	NA	cas3|773aa|up_8|NZ_CP044205.1_1246454_1248773_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|269aa|up_7|NZ_CP044205.1_1248769_1249576_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|641aa|up_6|NZ_CP044205.1_1249578_1251501_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7b|319aa|up_5|NZ_CP044205.1_1251525_1252482_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	NA|85aa|up_4|NZ_CP044205.1_1252512_1252767_+	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|124aa|up_3|NZ_CP044205.1_1252763_1253135_+	pfam18480, DUF5615, Domain of unknown function (DUF5615)	cas4|215aa|up_2|NZ_CP044205.1_1253131_1253776_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_1|NZ_CP044205.1_1253966_1255001_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP044205.1_1255155_1255446_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|781aa|down_0|NZ_CP044205.1_1257905_1260248_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|202aa|down_1|NZ_CP044205.1_1260591_1261197_+	pfam04011, LemA, LemA family	NA|282aa|down_2|NZ_CP044205.1_1261218_1262064_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|164aa|down_3|NZ_CP044205.1_1262069_1262561_+	COG3762, COG3762, Predicted membrane protein [Function unknown]	NA|498aa|down_4|NZ_CP044205.1_1262567_1264061_+	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|146aa|down_5|NZ_CP044205.1_1264057_1264495_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|160aa|down_6|NZ_CP044205.1_1264609_1265089_-	pfam06073, DUF934, Bacterial protein of unknown function (DUF934)	NA|552aa|down_7|NZ_CP044205.1_1265075_1266731_-	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|464aa|down_8|NZ_CP044205.1_1266974_1268366_+	TIGR00775, CT857_hypothetical_protein, Na+/H+ antiporter, NhaD family	NA|266aa|down_9|NZ_CP044205.1_1268450_1269248_+	pfam14023, DUF4239, Protein of unknown function (DUF4239)
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	4	2209594-2209678	4	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Orphan	GGTCATTCTCAAATAATGTGGGT	23	1	5	2209617-2209655|2209617-2209655|2209617-2209655|2209617-2209655|2209617-2209655	NZ_CP044205.1_645014-644976|NZ_CP044205.1_2206043-2206005|NZ_CP044205.1_3298661-3298623|NZ_CP044205.1_3692531-3692493|NZ_CP044205.1_4003007-4002969	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA|60aa|up_6|NZ_CP044205.1_2203794_2203974_-,NA|84aa|down_3|NZ_CP044205.1_2214345_2214597_+,NA|50aa|down_7|NZ_CP044205.1_2217229_2217379_-	NA|120aa|up_9|NZ_CP044205.1_2201760_2202120_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC	NA|218aa|up_8|NZ_CP044205.1_2202317_2202971_+	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|97aa|up_7|NZ_CP044205.1_2203398_2203689_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|60aa|up_6|NZ_CP044205.1_2203794_2203974_-	NA	NA|96aa|up_5|NZ_CP044205.1_2203980_2204268_-	COG5606, COG5606, Uncharacterized conserved small protein [Function unknown]	NA|107aa|up_4|NZ_CP044205.1_2204264_2204585_-	COG4679, COG4679, Phage-related protein [Function unknown]	NA|269aa|up_3|NZ_CP044205.1_2204941_2205748_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|326aa|up_2|NZ_CP044205.1_2206163_2207141_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|561aa|up_1|NZ_CP044205.1_2207125_2208808_-	pfam00665, rve, Integrase core domain	NA|192aa|up_0|NZ_CP044205.1_2208782_2209358_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|348aa|down_0|NZ_CP044205.1_2210524_2211568_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|508aa|down_1|NZ_CP044205.1_2211652_2213176_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|266aa|down_2|NZ_CP044205.1_2213551_2214349_+	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|84aa|down_3|NZ_CP044205.1_2214345_2214597_+	NA	NA|96aa|down_4|NZ_CP044205.1_2214584_2214872_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|229aa|down_5|NZ_CP044205.1_2214947_2215634_-	pfam05707, Zot, Zonular occludens toxin (Zot)	NA|331aa|down_6|NZ_CP044205.1_2215664_2216657_-	COG4542, PduX, Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|50aa|down_7|NZ_CP044205.1_2217229_2217379_-	NA	NA|768aa|down_8|NZ_CP044205.1_2217420_2219724_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|164aa|down_9|NZ_CP044205.1_2219773_2220265_-	pfam11026, DUF2721, Protein of unknown function (DUF2721)
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	5	3302212-3302296	5	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Orphan	GGTCATTCTCAAATAATGTGGGT	23	1	5	3302235-3302273|3302235-3302273|3302235-3302273|3302235-3302273|3302235-3302273	NZ_CP044205.1_645014-644976|NZ_CP044205.1_2206043-2206005|NZ_CP044205.1_3298661-3298623|NZ_CP044205.1_3692531-3692493|NZ_CP044205.1_4003007-4002969	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA,NA|154aa|down_3|NZ_CP044205.1_3308457_3308919_-,NA|306aa|down_4|NZ_CP044205.1_3309211_3310129_+,NA|535aa|down_8|NZ_CP044205.1_3313972_3315577_+,NA|78aa|down_9|NZ_CP044205.1_3315654_3315888_+	NA|281aa|up_9|NZ_CP044205.1_3290948_3291791_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|407aa|up_8|NZ_CP044205.1_3291879_3293100_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|182aa|up_7|NZ_CP044205.1_3293277_3293823_-	cd12107, Hemerythrin, Hemerythrin	NA|307aa|up_6|NZ_CP044205.1_3294430_3295351_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|141aa|up_5|NZ_CP044205.1_3295698_3296121_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|361aa|up_4|NZ_CP044205.1_3296355_3297438_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|391aa|up_3|NZ_CP044205.1_3297455_3298628_-	cd01948, EAL, EAL domain	NA|192aa|up_2|NZ_CP044205.1_3298919_3299495_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|561aa|up_1|NZ_CP044205.1_3299469_3301152_+	pfam00665, rve, Integrase core domain	NA|326aa|up_0|NZ_CP044205.1_3301136_3302114_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|773aa|down_0|NZ_CP044205.1_3302318_3304637_-	pfam03924, CHASE, CHASE domain	NA|171aa|down_1|NZ_CP044205.1_3304928_3305441_-	pfam08714, Fae, Formaldehyde-activating enzyme (Fae)	NA|358aa|down_2|NZ_CP044205.1_3305807_3306881_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|154aa|down_3|NZ_CP044205.1_3308457_3308919_-	NA	NA|306aa|down_4|NZ_CP044205.1_3309211_3310129_+	NA	NA|552aa|down_5|NZ_CP044205.1_3310115_3311771_+	cd06453, SufS_like, Cysteine desulfurase (SufS)-like	NA|436aa|down_6|NZ_CP044205.1_3311910_3313218_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|217aa|down_7|NZ_CP044205.1_3313295_3313946_+	pfam01914, MarC, MarC family integral membrane protein	NA|535aa|down_8|NZ_CP044205.1_3313972_3315577_+	NA	NA|78aa|down_9|NZ_CP044205.1_3315654_3315888_+	NA
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	6	3696082-3696166	6	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Orphan	GGTCATTCTCAAATAATGTGGGT	23	1	5	3696105-3696143|3696105-3696143|3696105-3696143|3696105-3696143|3696105-3696143	NZ_CP044205.1_645014-644976|NZ_CP044205.1_2206043-2206005|NZ_CP044205.1_3298661-3298623|NZ_CP044205.1_3692531-3692493|NZ_CP044205.1_4003007-4002969	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA|62aa|up_8|NZ_CP044205.1_3684325_3684511_-,NA|125aa|up_5|NZ_CP044205.1_3687161_3687536_-,NA	NA|138aa|up_9|NZ_CP044205.1_3683824_3684238_+	COG3753, COG3753, Uncharacterized protein conserved in bacteria [Function unknown]	NA|62aa|up_8|NZ_CP044205.1_3684325_3684511_-	NA	NA|404aa|up_7|NZ_CP044205.1_3684585_3685797_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|294aa|up_6|NZ_CP044205.1_3686213_3687095_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|125aa|up_5|NZ_CP044205.1_3687161_3687536_-	NA	NA|363aa|up_4|NZ_CP044205.1_3687961_3689050_-	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|1149aa|up_3|NZ_CP044205.1_3689051_3692498_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|192aa|up_2|NZ_CP044205.1_3692789_3693365_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|561aa|up_1|NZ_CP044205.1_3693339_3695022_+	pfam00665, rve, Integrase core domain	NA|326aa|up_0|NZ_CP044205.1_3695006_3695984_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|414aa|down_0|NZ_CP044205.1_3696188_3697430_-	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|159aa|down_1|NZ_CP044205.1_3697595_3698072_-	pfam14316, DUF4381, Domain of unknown function (DUF4381)	NA|312aa|down_2|NZ_CP044205.1_3698084_3699020_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|360aa|down_3|NZ_CP044205.1_3699312_3700392_+	pfam14415, DUF4424, Domain of unknown function (DUF4424)	NA|622aa|down_4|NZ_CP044205.1_3700474_3702340_-	cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF)	NA|88aa|down_5|NZ_CP044205.1_3702496_3702760_-	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|313aa|down_6|NZ_CP044205.1_3703365_3704304_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|143aa|down_7|NZ_CP044205.1_3704693_3705122_+	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins	NA|131aa|down_8|NZ_CP044205.1_3705133_3705526_+	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins	NA|224aa|down_9|NZ_CP044205.1_3705589_3706261_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	7	4006558-4006642	7	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Orphan	GGTCATTCTCAAATAATGTGGGT	23	1	5	4006581-4006619|4006581-4006619|4006581-4006619|4006581-4006619|4006581-4006619	NZ_CP044205.1_645014-644976|NZ_CP044205.1_2206043-2206005|NZ_CP044205.1_3298661-3298623|NZ_CP044205.1_3692531-3692493|NZ_CP044205.1_4003007-4002969	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA,NA|253aa|down_6|NZ_CP044205.1_4011489_4012248_-	NA|208aa|up_9|NZ_CP044205.1_3994627_3995251_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|394aa|up_8|NZ_CP044205.1_3995247_3996429_-	PRK03715, argD, acetylornithine transaminase protein; Provisional	NA|171aa|up_7|NZ_CP044205.1_3996883_3997396_+	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional	NA|385aa|up_6|NZ_CP044205.1_3997514_3998669_-	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|185aa|up_5|NZ_CP044205.1_3998665_3999220_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|476aa|up_4|NZ_CP044205.1_3999391_4000819_+	COG5316, COG5316, Uncharacterized conserved protein [Function unknown]	NA|375aa|up_3|NZ_CP044205.1_4001180_4002305_+	PRK10983, PRK10983, AI-2E family transporter YdiK	NA|192aa|up_2|NZ_CP044205.1_4003265_4003841_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|561aa|up_1|NZ_CP044205.1_4003815_4005498_+	pfam00665, rve, Integrase core domain	NA|326aa|up_0|NZ_CP044205.1_4005482_4006460_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|255aa|down_0|NZ_CP044205.1_4007238_4008003_-	COG3324, COG3324, Predicted enzyme related to lactoylglutathione lyase [General function prediction only]	NA|134aa|down_1|NZ_CP044205.1_4008237_4008639_-	PRK01842, PRK01842, hypothetical protein; Provisional	NA|127aa|down_2|NZ_CP044205.1_4008658_4009039_-	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase	NA|198aa|down_3|NZ_CP044205.1_4009080_4009674_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|315aa|down_4|NZ_CP044205.1_4009834_4010779_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|147aa|down_5|NZ_CP044205.1_4010768_4011209_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|253aa|down_6|NZ_CP044205.1_4011489_4012248_-	NA	NA|203aa|down_7|NZ_CP044205.1_4012552_4013161_-	cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria	NA|451aa|down_8|NZ_CP044205.1_4013147_4014500_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|349aa|down_9|NZ_CP044205.1_4014559_4015606_-	TIGR03123, one_C_unchar_1, probable H4MPT-linked C1 transfer pathway protein
GCF_009498235.1_ASM949823v1	NZ_CP044205	Candidatus Methylospira mobilis strain Shm1 chromosome, complete genome	8	4651175-4653481	3,8,3	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas6f,cas5f,cas8f,cas3f,cas1	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	Type I-F	TTTCTAAGCTGCCTATGCGGCAGCGAAC,TTTCTAAGCTGCCTATGCGGCAGCGAAC,TTTCTAAGCTGCCTATGCGGCAGCGAAC	28,28,28	2	2	4651503-4651534|4652223-4652254	NZ_CP044205.1_2361654-2361685|NZ_CP044205.1_2392322-2392291	I-F:I-F:I-F	38,38,38	38	TypeI-F	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,cas8c,cas7b,cas4,Cas9_archaeal,csa3,DEDDh,RT,DinG,cas6f,cas5f,cas8f,cas3f	NA,NA	NA|121aa|up_9|NZ_CP044205.1_4641497_4641860_-	pfam07449, HyaE, Hydrogenase-1 expression protein HyaE	NA|101aa|up_8|NZ_CP044205.1_4641856_4642159_-	TIGR00074, Hydrogenase_expression/formation_protein, hydrogenase assembly chaperone HypC/HupF	NA|208aa|up_7|NZ_CP044205.1_4642149_4642773_-	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group	NA|230aa|up_6|NZ_CP044205.1_4642887_4643577_-	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit	NA|218aa|up_5|NZ_CP044205.1_4643682_4644336_-	pfam04955, HupE_UreJ, HupE / UreJ protein	NA|598aa|up_4|NZ_CP044205.1_4644506_4646300_-	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase	NA|361aa|up_3|NZ_CP044205.1_4646313_4647396_-	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|452aa|up_2|NZ_CP044205.1_4647918_4649274_-	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family	NA|239aa|up_1|NZ_CP044205.1_4649507_4650224_-	pfam17172, GST_N_4, Glutathione S-transferase N-terminal domain	WYL|230aa|up_0|NZ_CP044205.1_4650400_4651090_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	cas6f|193aa|down_0|NZ_CP044205.1_4653613_4654192_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas5f|304aa|down_1|NZ_CP044205.1_4655203_4656115_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|398aa|down_2|NZ_CP044205.1_4656117_4657311_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	NA|125aa|down_3|NZ_CP044205.1_4657512_4657887_+	pfam08681, DUF1778, Protein of unknown function (DUF1778)	NA|110aa|down_4|NZ_CP044205.1_4658016_4658346_-	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	cas3f|1095aa|down_5|NZ_CP044205.1_4658657_4661942_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|316aa|down_6|NZ_CP044205.1_4661938_4662886_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|957aa|down_7|NZ_CP044205.1_4662932_4665803_-	sd00045, ANK, ankyrin repeats	NA|291aa|down_8|NZ_CP044205.1_4666416_4667289_+	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|119aa|down_9|NZ_CP044205.1_4667298_4667655_+	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325)
