assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009498155.1_ASM949815v1	NZ_CP042213	Enterococcus faecalis strain L15 chromosome, complete genome	1	526927-527426	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	Type II-A,Type II-B,Type II-C	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	1	1	527031-527060	NZ_CP042213.1_2294915-2294886	II-A,II-B:II-A,II-B:II-A,II-B	7,7,3	7	TypeII-A,TypeII-B,TypeII-C	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	NA|78aa|up_4|NZ_CP042213.1_520260_520494_+,NA	NA|191aa|up_9|NZ_CP042213.1_513706_514279_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|509aa|up_8|NZ_CP042213.1_514345_515872_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|550aa|up_7|NZ_CP042213.1_516075_517725_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|258aa|up_6|NZ_CP042213.1_517794_518568_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|472aa|up_5|NZ_CP042213.1_518701_520117_+	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV	NA|78aa|up_4|NZ_CP042213.1_520260_520494_+	NA	cas9|1338aa|up_3|NZ_CP042213.1_520966_524980_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP042213.1_524980_525847_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_1|NZ_CP042213.1_525843_526173_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|220aa|up_0|NZ_CP042213.1_526173_526833_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|338aa|down_0|NZ_CP042213.1_528243_529257_-	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|318aa|down_1|NZ_CP042213.1_529492_530446_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|506aa|down_2|NZ_CP042213.1_530446_531964_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|152aa|down_3|NZ_CP042213.1_532105_532561_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|507aa|down_4|NZ_CP042213.1_532594_534115_+	PLN02371, PLN02371, phosphoglucosamine mutase family protein	NA|185aa|down_5|NZ_CP042213.1_534125_534680_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|284aa|down_6|NZ_CP042213.1_534803_535655_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|729aa|down_7|NZ_CP042213.1_536008_538195_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|114aa|down_8|NZ_CP042213.1_538257_538599_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|412aa|down_9|NZ_CP042213.1_538754_539990_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain
GCF_009498155.1_ASM949815v1	NZ_CP042213	Enterococcus faecalis strain L15 chromosome, complete genome	2	892435-892529	2	CRISPRCasFinder	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	Orphan	CCAGATGCAAGTGGCGAACCAGA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	NA|40aa|up_9|NZ_CP042213.1_877815_877935_+,NA|362aa|down_4|NZ_CP042213.1_896997_898083_+	NA|40aa|up_9|NZ_CP042213.1_877815_877935_+	NA	NA|111aa|up_8|NZ_CP042213.1_878332_878665_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|882aa|up_7|NZ_CP042213.1_878778_881424_-	TIGR01828, Pyruvate_phosphate_dikinase, pyruvate, phosphate dikinase	NA|210aa|up_6|NZ_CP042213.1_881593_882223_+	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor	NA|271aa|up_5|NZ_CP042213.1_882235_883048_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|844aa|up_4|NZ_CP042213.1_883118_885650_-	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|245aa|up_3|NZ_CP042213.1_885646_886381_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|195aa|up_2|NZ_CP042213.1_886557_887142_+	pfam13238, AAA_18, AAA domain	NA|352aa|up_1|NZ_CP042213.1_887164_888220_+	cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains	NA|746aa|up_0|NZ_CP042213.1_888268_890506_-	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|310aa|down_0|NZ_CP042213.1_892939_893869_+	pfam01636, APH, Phosphotransferase enzyme family	NA|218aa|down_1|NZ_CP042213.1_893911_894565_+	pfam15983, DUF4767, Domain of unknown function (DUF4767)	NA|134aa|down_2|NZ_CP042213.1_894683_895085_+	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate	NA|537aa|down_3|NZ_CP042213.1_895244_896855_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|362aa|down_4|NZ_CP042213.1_896997_898083_+	NA	NA|268aa|down_5|NZ_CP042213.1_898197_899001_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|210aa|down_6|NZ_CP042213.1_899152_899782_+	pfam07099, DUF1361, Protein of unknown function (DUF1361)	NA|469aa|down_7|NZ_CP042213.1_899933_901340_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|399aa|down_8|NZ_CP042213.1_901549_902746_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|62aa|down_9|NZ_CP042213.1_902800_902986_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)
GCF_009498155.1_ASM949815v1	NZ_CP042213	Enterococcus faecalis strain L15 chromosome, complete genome	3	1815279-1815710	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	Orphan	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	6,6,5	6	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	NA|44aa|up_8|NZ_CP042213.1_1805407_1805539_-,NA|33aa|up_0|NZ_CP042213.1_1815031_1815130_-,NA|50aa|down_6|NZ_CP042213.1_1821936_1822086_-	NA|808aa|up_9|NZ_CP042213.1_1802878_1805302_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|44aa|up_8|NZ_CP042213.1_1805407_1805539_-	NA	NA|404aa|up_7|NZ_CP042213.1_1805615_1806827_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_6|NZ_CP042213.1_1806855_1807761_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_5|NZ_CP042213.1_1807882_1808863_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_4|NZ_CP042213.1_1808942_1810709_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_3|NZ_CP042213.1_1810705_1812439_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_2|NZ_CP042213.1_1812443_1813457_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_1|NZ_CP042213.1_1813453_1814872_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|33aa|up_0|NZ_CP042213.1_1815031_1815130_-	NA	NA|288aa|down_0|NZ_CP042213.1_1815867_1816731_-	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|694aa|down_1|NZ_CP042213.1_1816815_1818897_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|NZ_CP042213.1_1819027_1819393_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|NZ_CP042213.1_1819490_1820060_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|NZ_CP042213.1_1820192_1820708_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|413aa|down_5|NZ_CP042213.1_1820724_1821963_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|50aa|down_6|NZ_CP042213.1_1821936_1822086_-	NA	NA|375aa|down_7|NZ_CP042213.1_1822142_1823267_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_8|NZ_CP042213.1_1823492_1823837_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_9|NZ_CP042213.1_1823904_1825050_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_009498155.1_ASM949815v1	NZ_CP042213	Enterococcus faecalis strain L15 chromosome, complete genome	4	1835216-1835326	4	CRISPRCasFinder	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	Orphan	TTCGTGTAAATGACACAACTTGCCCTTCG	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	NA|36aa|up_4|NZ_CP042213.1_1830662_1830770_-,NA|69aa|down_0|NZ_CP042213.1_1835745_1835952_+,NA|83aa|down_1|NZ_CP042213.1_1836193_1836442_+,NA|85aa|down_5|NZ_CP042213.1_1839490_1839745_-,NA|163aa|down_8|NZ_CP042213.1_1841011_1841500_-,NA|230aa|down_9|NZ_CP042213.1_1841512_1842202_-	NA|325aa|up_9|NZ_CP042213.1_1825206_1826181_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|250aa|up_8|NZ_CP042213.1_1826393_1827143_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|290aa|up_7|NZ_CP042213.1_1827139_1828009_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|309aa|up_6|NZ_CP042213.1_1827995_1828922_+	cd01137, PsaA, Metal binding protein PsaA	NA|513aa|up_5|NZ_CP042213.1_1828976_1830515_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|36aa|up_4|NZ_CP042213.1_1830662_1830770_-	NA	NA|398aa|up_3|NZ_CP042213.1_1830884_1832078_-	cd08019, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|278aa|up_2|NZ_CP042213.1_1832092_1832926_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|227aa|up_1|NZ_CP042213.1_1832945_1833626_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP042213.1_1833644_1834715_-	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|69aa|down_0|NZ_CP042213.1_1835745_1835952_+	NA	NA|83aa|down_1|NZ_CP042213.1_1836193_1836442_+	NA	NA|323aa|down_2|NZ_CP042213.1_1836460_1837429_-	pfam07751, Abi_2, Abi-like protein	NA|329aa|down_3|NZ_CP042213.1_1838239_1839226_-	cd06417, GH25_LysA-like, LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|93aa|down_4|NZ_CP042213.1_1839212_1839491_-	pfam16079, Phage_holin_5_2, Phage holin family Hol44, in holin superfamily V	NA|85aa|down_5|NZ_CP042213.1_1839490_1839745_-	NA	NA|140aa|down_6|NZ_CP042213.1_1839757_1840177_-	pfam09693, Phage_XkdX, Phage uncharacterized protein (Phage_XkdX)	NA|286aa|down_7|NZ_CP042213.1_1840164_1841022_-	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|163aa|down_8|NZ_CP042213.1_1841011_1841500_-	NA	NA|230aa|down_9|NZ_CP042213.1_1841512_1842202_-	NA
GCF_009498155.1_ASM949815v1	NZ_CP042213	Enterococcus faecalis strain L15 chromosome, complete genome	5	2716570-2716643	5	CRISPRCasFinder	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	Orphan	ATAGTTGGCGAGCAACAGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh,RT	NA|71aa|up_9|NZ_CP042213.1_2705349_2705562_-,NA	NA|71aa|up_9|NZ_CP042213.1_2705349_2705562_-	NA	NA|289aa|up_8|NZ_CP042213.1_2705686_2706553_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|435aa|up_7|NZ_CP042213.1_2706720_2708025_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|423aa|up_6|NZ_CP042213.1_2708017_2709286_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|150aa|up_5|NZ_CP042213.1_2709494_2709944_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|236aa|up_4|NZ_CP042213.1_2709984_2710692_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|227aa|up_3|NZ_CP042213.1_2710787_2711468_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|238aa|up_2|NZ_CP042213.1_2711863_2712577_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|915aa|up_1|NZ_CP042213.1_2712837_2715582_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|217aa|up_0|NZ_CP042213.1_2715596_2716247_+	TIGR01990, bPGM, beta-phosphoglucomutase	NA|324aa|down_0|NZ_CP042213.1_2718048_2719020_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|146aa|down_1|NZ_CP042213.1_2719194_2719632_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|185aa|down_2|NZ_CP042213.1_2719764_2720319_-	cd00555, Maf, Nucleotide binding protein Maf	NA|711aa|down_3|NZ_CP042213.1_2720343_2722476_-	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|859aa|down_4|NZ_CP042213.1_2722507_2725084_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|124aa|down_5|NZ_CP042213.1_2725084_2725456_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|266aa|down_6|NZ_CP042213.1_2725543_2726341_-	pfam13277, YmdB, YmdB-like protein	NA|519aa|down_7|NZ_CP042213.1_2726500_2728057_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|349aa|down_8|NZ_CP042213.1_2728453_2729500_-	PRK09354, recA, recombinase A; Provisional	NA|415aa|down_9|NZ_CP042213.1_2729613_2730858_-	PRK00549, PRK00549, competence damage-inducible protein A; Provisional
