assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009497835.1_ASM949783v1	NZ_CP032490	Salmonella enterica subsp. enterica serovar Typhimurium strain SL26 chromosome, complete genome	1	379228-379317	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Orphan	TTGTCCAACGGATGTCCAACGGAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA|95aa|up_9|NZ_CP032490.1_373386_373671_-,NA|101aa|up_7|NZ_CP032490.1_374715_375018_-,NA|65aa|down_1|NZ_CP032490.1_381234_381429_+,NA|97aa|down_2|NZ_CP032490.1_381428_381719_+,NA|99aa|down_3|NZ_CP032490.1_381721_382018_+,NA|75aa|down_9|NZ_CP032490.1_383841_384066_+	NA|95aa|up_9|NZ_CP032490.1_373386_373671_-	NA	NA|65aa|up_8|NZ_CP032490.1_373707_373902_-	pfam11058, Ral, Antirestriction protein Ral	NA|101aa|up_7|NZ_CP032490.1_374715_375018_-	NA	NA|70aa|up_6|NZ_CP032490.1_375381_375591_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|358aa|up_5|NZ_CP032490.1_375631_376705_-	pfam13614, AAA_31, AAA domain	NA|114aa|up_4|NZ_CP032490.1_376843_377185_-	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|230aa|up_3|NZ_CP032490.1_377251_377941_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|72aa|up_2|NZ_CP032490.1_378051_378267_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|94aa|up_1|NZ_CP032490.1_378377_378659_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|49aa|up_0|NZ_CP032490.1_378693_378840_+	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|479aa|down_0|NZ_CP032490.1_379721_381158_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|65aa|down_1|NZ_CP032490.1_381234_381429_+	NA	NA|97aa|down_2|NZ_CP032490.1_381428_381719_+	NA	NA|99aa|down_3|NZ_CP032490.1_381721_382018_+	NA	NA|149aa|down_4|NZ_CP032490.1_381974_382421_+	pfam05772, NinB, NinB protein	NA|59aa|down_5|NZ_CP032490.1_382557_382734_+	pfam05322, NinE, NINE Protein	NA|114aa|down_6|NZ_CP032490.1_382736_383078_+	PHA01519, PHA01519, hypothetical protein	NA|59aa|down_7|NZ_CP032490.1_383070_383247_+	pfam05810, NinF, NinF protein	NA|202aa|down_8|NZ_CP032490.1_383239_383845_+	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|75aa|down_9|NZ_CP032490.1_383841_384066_+	NA
GCF_009497835.1_ASM949783v1	NZ_CP032490	Salmonella enterica subsp. enterica serovar Typhimurium strain SL26 chromosome, complete genome	2	3057386-3059288	2,1,1,2,3,2	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28,29,29,29	1	1	3059228-3059259	NZ_CP032490.1_2261651-2261620	I-E:I-E:I-E:I-E:I-E:I-E	29,30,31,30,29,31	31	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP032490.1_3049252_3050014_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP032490.1_3049994_3051044_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP032490.1_3051040_3051520_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP032490.1_3051519_3052230_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP032490.1_3052248_3052560_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP032490.1_3052750_3053107_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP032490.1_3053124_3053730_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP032490.1_3053716_3055156_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP032490.1_3055165_3056074_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP032490.1_3056324_3057371_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP032490.1_3059384_3059678_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP032490.1_3059677_3060598_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP032490.1_3060594_3061245_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP032490.1_3061226_3061973_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP032490.1_3061983_3063042_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP032490.1_3063055_3063616_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|down_6|NZ_CP032490.1_3068287_3069241_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_7|NZ_CP032490.1_3069328_3070063_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_8|NZ_CP032490.1_3070138_3071851_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_9|NZ_CP032490.1_3071850_3073650_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_009497835.1_ASM949783v1	NZ_CP032490	Salmonella enterica subsp. enterica serovar Typhimurium strain SL26 chromosome, complete genome	3	3075419-3076912	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,24,23	24	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	NA,NA	cas6e|217aa|up_9|NZ_CP032490.1_3060594_3061245_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|up_8|NZ_CP032490.1_3061226_3061973_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|up_7|NZ_CP032490.1_3061983_3063042_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_6|NZ_CP032490.1_3063055_3063616_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|318aa|up_5|NZ_CP032490.1_3068287_3069241_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP032490.1_3069328_3070063_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP032490.1_3070138_3071851_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP032490.1_3071850_3073650_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP032490.1_3074073_3074436_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP032490.1_3074523_3075321_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP032490.1_3077208_3077880_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP032490.1_3078015_3079314_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP032490.1_3079396_3081034_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP032490.1_3081261_3082062_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP032490.1_3082829_3083126_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP032490.1_3083091_3083448_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP032490.1_3083531_3085766_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP032490.1_3085817_3087113_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP032490.1_3087170_3089927_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP032490.1_3089970_3091113_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
