assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009432915.1_ASM943291v1	NZ_CP040314	Escherichia coli strain MA11 chromosome, complete genome	1	595338-595487	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|579aa|up_6|NZ_CP040314.1_586503_588240_+,NA|245aa|down_7|NZ_CP040314.1_604564_605299_+	NA|238aa|up_9|NZ_CP040314.1_584406_585120_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP040314.1_585190_585784_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP040314.1_585928_586381_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|579aa|up_6|NZ_CP040314.1_586503_588240_+	NA	NA|335aa|up_5|NZ_CP040314.1_588296_589301_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP040314.1_589462_589879_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP040314.1_589924_590428_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP040314.1_590620_591817_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP040314.1_591871_594727_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP040314.1_594726_595170_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP040314.1_595523_597035_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP040314.1_597301_598402_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP040314.1_598401_599484_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP040314.1_599644_601147_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP040314.1_601276_602296_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|425aa|down_5|NZ_CP040314.1_602740_604015_+	PRK09692, PRK09692, integrase; Provisional	NA|102aa|down_6|NZ_CP040314.1_604182_604488_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|245aa|down_7|NZ_CP040314.1_604564_605299_+	NA	NA|415aa|down_8|NZ_CP040314.1_605336_606581_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|191aa|down_9|NZ_CP040314.1_606906_607479_-	pfam07455, Psu, Phage polarity suppression protein (Psu)
GCF_009432915.1_ASM943291v1	NZ_CP040314	Escherichia coli strain MA11 chromosome, complete genome	2	826889-827023	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|251aa|up_4|NZ_CP040314.1_818842_819595_+,NA|190aa|down_7|NZ_CP040314.1_836064_836634_+	NA|274aa|up_9|NZ_CP040314.1_811977_812799_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP040314.1_812795_813785_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP040314.1_813784_815071_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP040314.1_815123_817478_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP040314.1_817732_818548_+	PRK09430, djlA, co-chaperone DjlA	NA|251aa|up_4|NZ_CP040314.1_818842_819595_+	NA	NA|220aa|up_3|NZ_CP040314.1_820012_820672_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP040314.1_820683_823590_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP040314.1_823753_826105_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP040314.1_826179_826875_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP040314.1_827074_828577_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP040314.1_828587_830288_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP040314.1_830626_831505_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP040314.1_831590_832355_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP040314.1_832441_833140_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP040314.1_833123_834734_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP040314.1_834709_835693_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP040314.1_836064_836634_+	NA	NA|553aa|down_8|NZ_CP040314.1_836862_838521_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP040314.1_838609_838741_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_009432915.1_ASM943291v1	NZ_CP040314	Escherichia coli strain MA11 chromosome, complete genome	3	4326620-4326832	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP040314.1_4318432_4319194_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP040314.1_4319174_4320224_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP040314.1_4320220_4320700_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP040314.1_4320699_4321410_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP040314.1_4321428_4321740_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP040314.1_4321933_4322257_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP040314.1_4322306_4322912_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP040314.1_4322911_4324339_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP040314.1_4324340_4325249_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP040314.1_4325500_4326538_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP040314.1_4326927_4327221_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP040314.1_4327217_4328141_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP040314.1_4328137_4328788_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP040314.1_4328769_4329516_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP040314.1_4329526_4330582_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP040314.1_4330593_4331130_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP040314.1_4331126_4332689_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP040314.1_4332786_4335486_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP040314.1_4335677_4335830_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP040314.1_4336093_4336828_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_009432915.1_ASM943291v1	NZ_CP040314	Escherichia coli strain MA11 chromosome, complete genome	4	4352523-4352611	4	CRISPRCasFinder	no	cas3	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|600aa|up_9|NZ_CP040314.1_4338613_4340413_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_8|NZ_CP040314.1_4340728_4341094_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP040314.1_4341171_4342443_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP040314.1_4342433_4342694_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP040314.1_4342710_4343286_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP040314.1_4344290_4345070_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP040314.1_4346477_4347932_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP040314.1_4348001_4348787_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP040314.1_4349105_4350383_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP040314.1_4350409_4351888_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP040314.1_4352950_4353622_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP040314.1_4353776_4354397_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP040314.1_4354410_4355085_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP040314.1_4355318_4356467_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP040314.1_4356463_4357378_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP040314.1_4357437_4358736_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP040314.1_4358823_4360461_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP040314.1_4360688_4361480_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP040314.1_4361550_4361886_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP040314.1_4361885_4362134_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_009432915.1_ASM943291v1	NZ_CP040314	Escherichia coli strain MA11 chromosome, complete genome	5	4475965-4476054	5	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	AAAAATGTCTAAAGCCCCTTTAGATAAAAAT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|124aa|up_8|NZ_CP040314.1_4470394_4470766_-,NA|72aa|up_7|NZ_CP040314.1_4470768_4470984_-,NA|71aa|up_6|NZ_CP040314.1_4471857_4472070_-,NA|103aa|up_5|NZ_CP040314.1_4472066_4472375_-,NA|74aa|up_4|NZ_CP040314.1_4472374_4472596_-,NA|127aa|up_3|NZ_CP040314.1_4472637_4473018_-,NA|86aa|up_2|NZ_CP040314.1_4473342_4473600_-,NA|222aa|up_1|NZ_CP040314.1_4473612_4474278_-,NA|61aa|up_0|NZ_CP040314.1_4474425_4474608_-,NA|69aa|down_2|NZ_CP040314.1_4478542_4478749_-	NA|343aa|up_9|NZ_CP040314.1_4469347_4470376_-	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|124aa|up_8|NZ_CP040314.1_4470394_4470766_-	NA	NA|72aa|up_7|NZ_CP040314.1_4470768_4470984_-	NA	NA|71aa|up_6|NZ_CP040314.1_4471857_4472070_-	NA	NA|103aa|up_5|NZ_CP040314.1_4472066_4472375_-	NA	NA|74aa|up_4|NZ_CP040314.1_4472374_4472596_-	NA	NA|127aa|up_3|NZ_CP040314.1_4472637_4473018_-	NA	NA|86aa|up_2|NZ_CP040314.1_4473342_4473600_-	NA	NA|222aa|up_1|NZ_CP040314.1_4473612_4474278_-	NA	NA|61aa|up_0|NZ_CP040314.1_4474425_4474608_-	NA	NA|184aa|down_0|NZ_CP040314.1_4476984_4477536_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|107aa|down_1|NZ_CP040314.1_4478188_4478509_+	pfam13992, YecR, YecR-like lipoprotein	NA|69aa|down_2|NZ_CP040314.1_4478542_4478749_-	NA	NA|252aa|down_3|NZ_CP040314.1_4479398_4480154_-	PRK10871, nlpD, murein hydrolase activator NlpD	NA|766aa|down_4|NZ_CP040314.1_4480569_4482867_+	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional	NA|293aa|down_5|NZ_CP040314.1_4482877_4483756_+	PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB; Provisional	NA|160aa|down_6|NZ_CP040314.1_4483752_4484232_+	PRK09908, PRK09908, xanthine dehydrogenase iron sulfur-binding subunit XdhC	NA|593aa|down_7|NZ_CP040314.1_4484271_4486050_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|396aa|down_8|NZ_CP040314.1_4486528_4487716_+	PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family protein; Validated	NA|399aa|down_9|NZ_CP040314.1_4487773_4488970_+	TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase
