assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009387915.1_ASM938791v1	NZ_CP035196	Klebsiella pneumoniae strain LH375 chromosome, complete genome	1	168260-169200	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	168838-168869	NZ_CP035196.1_801072-801041	I-E:I-E:I-E	14,15,15	15	TypeI-E	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL,RT	NA,NA	NA|600aa|up_9|NZ_CP035196.1_155168_156968_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|NZ_CP035196.1_156967_158680_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|NZ_CP035196.1_158778_159513_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|888aa|up_6|NZ_CP035196.1_159719_162383_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cse2gr11|181aa|up_5|NZ_CP035196.1_163947_164490_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP035196.1_164508_165564_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP035196.1_165574_166321_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP035196.1_166302_166953_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP035196.1_166949_167870_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP035196.1_167869_168163_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|674aa|down_0|NZ_CP035196.1_169280_171302_-	cd18422, BTB_POZ_KCNG3, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily G member 3 (KCNG3)	NA|396aa|down_1|NZ_CP035196.1_171288_172476_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|352aa|down_2|NZ_CP035196.1_172511_173567_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|472aa|down_3|NZ_CP035196.1_173804_175220_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_4|NZ_CP035196.1_175229_176138_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_5|NZ_CP035196.1_176147_177575_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_6|NZ_CP035196.1_177574_178180_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_7|NZ_CP035196.1_178230_178557_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|106aa|down_8|NZ_CP035196.1_178697_179015_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_9|NZ_CP035196.1_179034_179745_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase
GCF_009387915.1_ASM938791v1	NZ_CP035196	Klebsiella pneumoniae strain LH375 chromosome, complete genome	2	2644143-2644220	2	CRISPRCasFinder	no		cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL,RT	Orphan	TGCCGGGCGGCGGCTAACGCCTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL,RT	NA|104aa|up_8|NZ_CP035196.1_2636893_2637205_+,NA|71aa|up_7|NZ_CP035196.1_2637328_2637541_+,NA	NA|674aa|up_9|NZ_CP035196.1_2634895_2636917_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|104aa|up_8|NZ_CP035196.1_2636893_2637205_+	NA	NA|71aa|up_7|NZ_CP035196.1_2637328_2637541_+	NA	NA|241aa|up_6|NZ_CP035196.1_2637627_2638350_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|241aa|up_5|NZ_CP035196.1_2638291_2639014_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_4|NZ_CP035196.1_2639006_2639762_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|386aa|up_3|NZ_CP035196.1_2639745_2640903_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_2|NZ_CP035196.1_2640899_2641940_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_1|NZ_CP035196.1_2642153_2643443_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_0|NZ_CP035196.1_2643513_2643990_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|461aa|down_0|NZ_CP035196.1_2644768_2646151_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|509aa|down_1|NZ_CP035196.1_2646249_2647776_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|563aa|down_2|NZ_CP035196.1_2647772_2649461_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|242aa|down_3|NZ_CP035196.1_2649603_2650329_-	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|319aa|down_4|NZ_CP035196.1_2650390_2651347_-	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|406aa|down_5|NZ_CP035196.1_2651343_2652561_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|428aa|down_6|NZ_CP035196.1_2652817_2654101_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|896aa|down_7|NZ_CP035196.1_2654373_2657061_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|144aa|down_8|NZ_CP035196.1_2657112_2657544_-	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|362aa|down_9|NZ_CP035196.1_2658077_2659163_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit
GCF_009387915.1_ASM938791v1	NZ_CP035200	Klebsiella pneumoniae strain LH375 plasmid pLH375-3, complete sequence	1	23465-23545	1	CRISPRCasFinder	no			Orphan	TTCAATTTCGAAGAAATTGTTAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,WYL,RT	NA|76aa|up_8|NZ_CP035200.1_16860_17088_+,NA|102aa|up_1|NZ_CP035200.1_22743_23049_+,NA|102aa|up_0|NZ_CP035200.1_23082_23388_+,NA|252aa|down_1|NZ_CP035200.1_25910_26666_+,NA|114aa|down_3|NZ_CP035200.1_27236_27578_+,NA|78aa|down_4|NZ_CP035200.1_27615_27849_-,NA|227aa|down_6|NZ_CP035200.1_28739_29420_-	NA|235aa|up_9|NZ_CP035200.1_16146_16851_+	pfam07996, T4SS, Type IV secretion system proteins	NA|76aa|up_8|NZ_CP035200.1_16860_17088_+	NA	NA|359aa|up_7|NZ_CP035200.1_17099_18176_+	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|228aa|up_6|NZ_CP035200.1_18397_19081_+	pfam04335, VirB8, VirB8 protein	NA|302aa|up_5|NZ_CP035200.1_19080_19986_+	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9	NA|423aa|up_4|NZ_CP035200.1_20029_21298_+	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|342aa|up_3|NZ_CP035200.1_21287_22313_+	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|136aa|up_2|NZ_CP035200.1_22309_22717_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|102aa|up_1|NZ_CP035200.1_22743_23049_+	NA	NA|102aa|up_0|NZ_CP035200.1_23082_23388_+	NA	NA|579aa|down_0|NZ_CP035200.1_24165_25902_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|252aa|down_1|NZ_CP035200.1_25910_26666_+	NA	NA|158aa|down_2|NZ_CP035200.1_26702_27176_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|114aa|down_3|NZ_CP035200.1_27236_27578_+	NA	NA|78aa|down_4|NZ_CP035200.1_27615_27849_-	NA	NA|216aa|down_5|NZ_CP035200.1_27889_28537_-	cd02042, ParAB_family, partition proteins ParAB family	NA|227aa|down_6|NZ_CP035200.1_28739_29420_-	NA	NA|524aa|down_7|NZ_CP035200.1_29587_31159_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|187aa|down_8|NZ_CP035200.1_31585_32146_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|235aa|down_9|NZ_CP035200.1_34811_35516_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
