The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045384	Ruegeria sp. THAF33 chromosome, complete genome	3455485	354081	412172	3455485	tRNA,terminase,transposase	Acidithiobacillus_phage(15.38%)	44	NA	NA
WP_152456926.1|354081_354975_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	50.4	1.0e-70
WP_152456927.1|355018_356635_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_152456928.1|356702_356948_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
WP_152456929.1|356944_357370_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_005980833.1|357395_357530_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_152456930.1|357825_358557_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_152456931.1|358560_359979_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_172978519.1|360045_361380_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_152456933.1|361871_363542_-	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	46.8	4.2e-86
WP_152456934.1|363538_363943_-	DUF2924 domain-containing protein	NA	K4I3X1	Acidithiobacillus_phage	34.8	6.3e-12
WP_152456935.1|363939_364170_-	DUF3489 domain-containing protein	NA	NA	NA	NA	NA
WP_152459812.1|364684_366019_+	ParB N-terminal domain-containing protein	NA	A0A2H4JGF1	uncultured_Caudovirales_phage	38.1	1.9e-73
WP_172978451.1|366011_366488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172978452.1|366474_367956_+|terminase	phage terminase large subunit	terminase	A0A2K9V3I6	Faecalibacterium_phage	29.2	4.8e-41
WP_152456937.1|368793_369291_-	DNA mismatch endonuclease Vsr	NA	E5E3X5	Burkholderia_phage	48.9	1.6e-36
WP_172978453.1|369358_370891_+	DNA cytosine methyltransferase	NA	G3CB01	Aeropyrum_pernix_spindle-shaped_virus	29.2	1.5e-21
WP_152456939.1|370942_372262_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_152456940.1|372468_373628_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.4	6.6e-46
WP_152456941.1|373738_375544_-	AIPR family protein	NA	NA	NA	NA	NA
WP_152456942.1|375545_376550_-	PD-(D/E)XK motif protein	NA	NA	NA	NA	NA
WP_152456943.1|376533_379422_-	endonuclease	NA	NA	NA	NA	NA
WP_152456944.1|379418_380921_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_152459813.1|380917_382015_-	sigma-70 family RNA polymerase sigma factor	NA	F4YCU2	Synechococcus_phage	29.8	4.2e-18
WP_152456945.1|383846_384707_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_172978454.1|385061_386207_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_152456947.1|387523_389203_+	DUF4071 domain-containing protein	NA	NA	NA	NA	NA
WP_152456948.1|389267_390635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152456949.1|390636_391188_+	DUF882 domain-containing protein	NA	R9ZW03	Cellulophaga_phage	38.1	2.1e-10
WP_172978455.1|391192_392521_+	DUF4071 domain-containing protein	NA	NA	NA	NA	NA
WP_152456952.1|392573_393331_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_152456954.1|393575_394181_-	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_152456955.1|394347_395052_+|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	37.6	3.5e-26
WP_152456957.1|395181_398214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152456958.1|398324_399947_-	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_152456960.1|400828_401521_-	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_152456962.1|401872_402961_-	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_152456964.1|403121_404081_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	33.7	1.1e-19
WP_172978435.1|405260_405554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152456965.1|405737_406145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172978456.1|406194_408135_-	CHAT domain-containing protein	NA	NA	NA	NA	NA
WP_152456969.1|408165_408984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152456971.1|409079_410045_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_152456972.1|410880_411270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152456974.1|411467_412172_+|transposase	IS6 family transposase	transposase	A0A1X9I6E7	Streptococcus_phage	37.4	4.6e-26
>prophage 2
NZ_CP045384	Ruegeria sp. THAF33 chromosome, complete genome	3455485	1831288	1877902	3455485	tRNA,head,portal,capsid,protease,tail	Paracoccus_phage(26.67%)	48	NA	NA
WP_152458279.1|1831288_1832671_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_152458280.1|1832667_1833426_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_152458281.1|1833450_1834521_+	agmatine deiminase family protein	NA	NA	NA	NA	NA
WP_152458282.1|1834539_1835661_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_152458283.1|1835732_1836938_-	DUF4115 domain-containing protein	NA	NA	NA	NA	NA
WP_152458284.1|1837067_1838291_-	5-aminolevulinate synthase	NA	NA	NA	NA	NA
WP_152458285.1|1838616_1840002_+	dipeptidase	NA	NA	NA	NA	NA
WP_152458286.1|1840155_1841550_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_152458287.1|1841763_1842198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152458288.1|1842242_1842818_-	DUF924 family protein	NA	A0A1V0SIY0	Klosneuvirus	31.8	1.0e-15
WP_152458289.1|1842927_1844199_-	MFS transporter	NA	NA	NA	NA	NA
WP_152458290.1|1844310_1845357_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_152458291.1|1845399_1848795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152458292.1|1848854_1849316_+	redoxin domain-containing protein	NA	NA	NA	NA	NA
WP_152458293.1|1849376_1850219_+	DUF455 family protein	NA	NA	NA	NA	NA
WP_152458294.1|1850393_1851725_+	peptidoglycan DD-metalloendopeptidase family protein	NA	G9BW84	Planktothrix_phage	44.4	2.2e-24
WP_117868644.1|1851714_1852215_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA	NA
WP_152458295.1|1852336_1853146_+	zinc-dependent peptidase	NA	NA	NA	NA	NA
WP_152458296.1|1853259_1853949_+	aquaporin Z	NA	NA	NA	NA	NA
WP_152458297.1|1854011_1854569_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.2	8.6e-44
WP_152458298.1|1854561_1855068_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	55.6	5.6e-42
WP_152458299.1|1855201_1856392_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_172978479.1|1856493_1856808_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_171115419.1|1856948_1857248_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_152458301.1|1857418_1858408_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
WP_152458302.1|1858423_1859794_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA	NA
WP_152458303.1|1859808_1861107_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
WP_171231439.1|1861329_1861500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152458304.1|1861504_1862314_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_152458305.1|1862397_1862736_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA	NA
WP_152458306.1|1862716_1863013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152459875.1|1863012_1865577_-	glycoside hydrolase TIM-barrel-like domain-containing protein	NA	A0A0B5A7K5	Paracoccus_phage	38.6	2.3e-160
WP_152458307.1|1867127_1867574_-	peptidase	NA	A0A1V0DYB6	Dinoroseobacter_phage	48.9	1.3e-29
WP_152458308.1|1867570_1868458_-	DUF2163 domain-containing protein	NA	A0A0B5A5B8	Paracoccus_phage	39.6	8.3e-57
WP_152458309.1|1868457_1869090_-	TIGR02217 family protein	NA	A0A0B5A2K3	Paracoccus_phage	52.9	1.2e-60
WP_152458310.1|1869105_1869768_-|tail	phage tail tape measure protein	tail	K7YBG2	uncultured_Mediterranean_phage	39.1	4.4e-10
WP_152458311.1|1869754_1869964_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_152458312.1|1869960_1870281_-	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_152458313.1|1870285_1870699_-|tail	phage major tail protein, TP901-1 family	tail	A0A1J0GVL1	Pseudoalteromonas_phage	31.9	3.1e-06
WP_152458314.1|1870719_1871133_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_152458315.1|1871129_1871468_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_152458316.1|1871464_1872064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152458317.1|1872234_1873413_-|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	39.8	1.1e-67
WP_152458318.1|1873447_1873993_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	52.5	1.1e-32
WP_152458319.1|1874019_1874238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152458320.1|1874230_1875391_-|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	38.3	1.9e-61
WP_152458321.1|1875570_1876539_+	cation transporter	NA	M1Q1N9	Streptococcus_phage	28.2	7.5e-11
WP_172978522.1|1876558_1877902_-	DNA-packaging protein	NA	A0A0K1LMR9	Caulobacter_phage	41.2	6.9e-79
>prophage 3
NZ_CP045384	Ruegeria sp. THAF33 chromosome, complete genome	3455485	3445133	3452664	3455485		Vibrio_phage(16.67%)	7	NA	NA
WP_152459952.1|3445133_3446162_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	1.2e-14
WP_152459785.1|3446181_3447132_-	pyridoxal-phosphate dependent enzyme	NA	A0A1X9I5F1	Streptococcus_phage	36.1	3.0e-36
WP_152459786.1|3447128_3448316_-	glycine C-acetyltransferase	NA	G9E4Q1	Emiliania_huxleyi_virus	28.2	9.8e-37
WP_152459787.1|3448426_3448990_-	helix-turn-helix domain-containing protein	NA	I3VYZ1	Thermoanaerobacterium_phage	41.7	4.7e-05
WP_152459788.1|3449106_3450282_+	beta-ketothiolase BktB	NA	NA	NA	NA	NA
WP_152459789.1|3450378_3451908_-	2-polyprenylphenol 6-hydroxylase	NA	A0A2P0VMP1	Tetraselmis_virus	29.6	5.0e-17
WP_152459790.1|3451911_3452664_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	A0A097BYE1	Leuconostoc_phage	27.4	1.8e-07
