assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009363175.1_ASM936317v1	NZ_CP045205	Citrobacter sp. NMI7904_11 chromosome, complete genome	1	187857-187959	1	CRISPRCasFinder	no		cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	Orphan	TGCCGGGGGCGCTTCGCTTGCCCGGCCTGCATTT	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	NA,NA	NA|159aa|up_9|NZ_CP045205.1_179366_179843_+	COG4706, COG4706, Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]	NA|244aa|up_8|NZ_CP045205.1_179839_180571_+	TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative	NA|410aa|up_7|NZ_CP045205.1_180567_181797_+	PRK09116, PRK09116, beta-ketoacyl-ACP synthase	NA|195aa|up_6|NZ_CP045205.1_181798_182383_+	PRK10351, PRK10351, 4'-phosphopantetheinyl transferase AcpT	NA|525aa|up_5|NZ_CP045205.1_182519_184094_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|315aa|up_4|NZ_CP045205.1_184093_185038_+	PRK10352, PRK10352, nickel transporter permease NikB; Provisional	NA|278aa|up_3|NZ_CP045205.1_185034_185868_+	PRK10417, nikC, nickel transporter permease NikC; Provisional	NA|255aa|up_2|NZ_CP045205.1_185867_186632_+	PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional	NA|267aa|up_1|NZ_CP045205.1_186628_187429_+	PRK10419, nikE, nickel ABC transporter ATP-binding protein NikE	NA|134aa|up_0|NZ_CP045205.1_187441_187843_+	PRK02967, PRK02967, nickel-responsive transcriptional regulator NikR	NA|375aa|down_0|NZ_CP045205.1_188057_189182_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|913aa|down_1|NZ_CP045205.1_189181_191920_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|356aa|down_2|NZ_CP045205.1_191916_192984_-	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|398aa|down_3|NZ_CP045205.1_193305_194499_-	COG2081, COG2081, Predicted flavoproteins [General function prediction only]	NA|500aa|down_4|NZ_CP045205.1_194729_196229_+	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|112aa|down_5|NZ_CP045205.1_196291_196627_-	PRK04960, PRK04960, universal stress protein UspB; Provisional	NA|145aa|down_6|NZ_CP045205.1_197025_197460_+	PRK15118, PRK15118, universal stress protein UspA	NA|493aa|down_7|NZ_CP045205.1_197724_199203_+	PRK10207, PRK10207, dipeptide/tripeptide permease DtpB	NA|168aa|down_8|NZ_CP045205.1_199291_199795_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|401aa|down_9|NZ_CP045205.1_200027_201230_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
GCF_009363175.1_ASM936317v1	NZ_CP045205	Citrobacter sp. NMI7904_11 chromosome, complete genome	2	899318-899422	2	CRISPRCasFinder	no		cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	Orphan	CTGAAGCGCGAGTAGGTCGGATAAGGCAA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	NA|81aa|up_3|NZ_CP045205.1_894973_895216_+,NA	NA|527aa|up_9|NZ_CP045205.1_885950_887531_-	COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]	NA|376aa|up_8|NZ_CP045205.1_887984_889112_+	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|409aa|up_7|NZ_CP045205.1_889117_890344_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|262aa|up_6|NZ_CP045205.1_890350_891136_+	pfam10127, Nuc-transf, Predicted nucleotidyltransferase	NA|450aa|up_5|NZ_CP045205.1_891234_892584_-	PRK09084, PRK09084, aspartate kinase III; Validated	NA|549aa|up_4|NZ_CP045205.1_892876_894523_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|81aa|up_3|NZ_CP045205.1_894973_895216_+	NA	NA|213aa|up_2|NZ_CP045205.1_895279_895918_+	pfam11102, YjbF, Group 4 capsule polysaccharide lipoprotein gfcB, YjbF	NA|246aa|up_1|NZ_CP045205.1_895914_896652_+	pfam06251, Caps_synth_GfcC, Capsule biosynthesis GfcC	NA|699aa|up_0|NZ_CP045205.1_896651_898748_+	pfam06082, YjbH, Exopolysaccharide biosynthesis protein YbjH	NA|297aa|down_0|NZ_CP045205.1_899535_900426_-	PRK10998, malG, maltose ABC transporter permease MalG	NA|515aa|down_1|NZ_CP045205.1_900526_902071_-	PRK10999, malF, maltose ABC transporter permease MalF	NA|397aa|down_2|NZ_CP045205.1_902197_903388_-	PRK09474, malE, maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA|370aa|down_3|NZ_CP045205.1_903756_904866_+	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA|434aa|down_4|NZ_CP045205.1_904940_906242_+	PRK09360, lamB, maltoporin LamB	NA|315aa|down_5|NZ_CP045205.1_906434_907379_+	PRK10564, PRK10564, maltose operon protein MalM	NA|166aa|down_6|NZ_CP045205.1_907559_908057_+	PRK11655, ubiC, chorismate pyruvate lyase; Provisional	NA|291aa|down_7|NZ_CP045205.1_908069_908942_+	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|807aa|down_8|NZ_CP045205.1_909077_911498_-	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB	NA|123aa|down_9|NZ_CP045205.1_911668_912037_+	COG0818, DgkA, Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
GCF_009363175.1_ASM936317v1	NZ_CP045205	Citrobacter sp. NMI7904_11 chromosome, complete genome	3	1832994-1833092	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	Unclear	CGCACATGAAGGCGCACATACATCCGCACA	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	NA|95aa|up_9|NZ_CP045205.1_1824846_1825131_-,NA|96aa|up_5|NZ_CP045205.1_1829687_1829975_-,NA|53aa|up_4|NZ_CP045205.1_1830060_1830219_-,NA|238aa|down_1|NZ_CP045205.1_1834258_1834972_+,NA|76aa|down_2|NZ_CP045205.1_1834968_1835196_+,NA|60aa|down_3|NZ_CP045205.1_1835192_1835372_+,NA|243aa|down_4|NZ_CP045205.1_1835375_1836104_+,NA|99aa|down_5|NZ_CP045205.1_1836096_1836393_+,NA|86aa|down_6|NZ_CP045205.1_1836621_1836879_+,NA|74aa|down_9|NZ_CP045205.1_1839340_1839562_+	NA|95aa|up_9|NZ_CP045205.1_1824846_1825131_-	NA	NA|80aa|up_8|NZ_CP045205.1_1825177_1825417_-	pfam13269, DUF4060, Protein of unknown function (DUF4060)	NA|361aa|up_7|NZ_CP045205.1_1825458_1826541_-	pfam03837, RecT, RecT family	NA|1003aa|up_6|NZ_CP045205.1_1826551_1829560_-	PRK09709, PRK09709, exodeoxyribonuclease VIII	NA|96aa|up_5|NZ_CP045205.1_1829687_1829975_-	NA	NA|53aa|up_4|NZ_CP045205.1_1830060_1830219_-	NA	NA|65aa|up_3|NZ_CP045205.1_1830218_1830413_-	pfam07358, DUF1482, Protein of unknown function (DUF1482)	NA|137aa|up_2|NZ_CP045205.1_1830875_1831286_-	pfam01381, HTH_3, Helix-turn-helix	NA|78aa|up_1|NZ_CP045205.1_1831401_1831635_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|165aa|up_0|NZ_CP045205.1_1831685_1832180_+	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|232aa|down_0|NZ_CP045205.1_1833551_1834247_+	pfam06992, Phage_lambda_P, Replication protein P	NA|238aa|down_1|NZ_CP045205.1_1834258_1834972_+	NA	NA|76aa|down_2|NZ_CP045205.1_1834968_1835196_+	NA	NA|60aa|down_3|NZ_CP045205.1_1835192_1835372_+	NA	NA|243aa|down_4|NZ_CP045205.1_1835375_1836104_+	NA	NA|99aa|down_5|NZ_CP045205.1_1836096_1836393_+	NA	NA|86aa|down_6|NZ_CP045205.1_1836621_1836879_+	NA	NA|660aa|down_7|NZ_CP045205.1_1836875_1838855_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|78aa|down_8|NZ_CP045205.1_1838998_1839232_+	PRK10597, PRK10597, DNA damage-inducible protein I; Provisional	NA|74aa|down_9|NZ_CP045205.1_1839340_1839562_+	NA
GCF_009363175.1_ASM936317v1	NZ_CP045205	Citrobacter sp. NMI7904_11 chromosome, complete genome	4	3279152-3279243	4	CRISPRCasFinder	no		cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	Orphan	CAAAAAGCGCAGGCCGCTAAAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	NA,NA|28aa|down_0|NZ_CP045205.1_3279398_3279482_+,NA|57aa|down_4|NZ_CP045205.1_3281233_3281404_-	NA|205aa|up_9|NZ_CP045205.1_3268186_3268801_+	PRK11621, PRK11621, Tat proofreading chaperone DmsD	NA|237aa|up_8|NZ_CP045205.1_3269094_3269805_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|301aa|up_7|NZ_CP045205.1_3269833_3270736_+	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|216aa|up_6|NZ_CP045205.1_3270745_3271393_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|383aa|up_5|NZ_CP045205.1_3271392_3272541_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|232aa|up_4|NZ_CP045205.1_3272620_3273316_-	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD	NA|407aa|up_3|NZ_CP045205.1_3273441_3274662_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|300aa|up_2|NZ_CP045205.1_3274790_3275690_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|418aa|up_1|NZ_CP045205.1_3275811_3277065_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|495aa|up_0|NZ_CP045205.1_3277343_3278828_+	cd06460, M32_Taq, Peptidase family M32, which includes thermostable carboxypeptidases TaqCP, PfuCP and FisCP	NA|28aa|down_0|NZ_CP045205.1_3279398_3279482_+	NA	NA|274aa|down_1|NZ_CP045205.1_3279583_3280405_+	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|110aa|down_2|NZ_CP045205.1_3280444_3280774_-	PRK10650, PRK10650, multidrug/spermidine efflux SMR transporter subunit MdtI	NA|121aa|down_3|NZ_CP045205.1_3280760_3281123_-	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ	NA|57aa|down_4|NZ_CP045205.1_3281233_3281404_-	NA	NA|345aa|down_5|NZ_CP045205.1_3281540_3282575_+	PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed	NA|463aa|down_6|NZ_CP045205.1_3282623_3284012_-	PRK09444, pntB, Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA|510aa|down_7|NZ_CP045205.1_3284022_3285552_-	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA|315aa|down_8|NZ_CP045205.1_3286078_3287023_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|461aa|down_9|NZ_CP045205.1_3287209_3288592_+	TIGR00905, Arginine/ornithine_antiporter, transporter, basic amino acid/polyamine antiporter (APA) family
GCF_009363175.1_ASM936317v1	NZ_CP045205	Citrobacter sp. NMI7904_11 chromosome, complete genome	5	4473123-4473245	5	CRISPRCasFinder	no	WYL	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	Unclear	GTATAAGCCGCACCCCGTGGCCGGATATAAATAAG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	NA|360aa|up_8|NZ_CP045205.1_4461597_4462677_+,NA	NA|197aa|up_9|NZ_CP045205.1_4460957_4461548_+	PRK11574, PRK11574, protein deglycase YajL	NA|360aa|up_8|NZ_CP045205.1_4461597_4462677_+	NA	NA|263aa|up_7|NZ_CP045205.1_4462762_4463551_-	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|173aa|up_6|NZ_CP045205.1_4463561_4464080_-	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|778aa|up_5|NZ_CP045205.1_4464112_4466446_-	COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	NA|232aa|up_4|NZ_CP045205.1_4466616_4467312_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|483aa|up_3|NZ_CP045205.1_4467348_4468797_-	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional	NA|81aa|up_2|NZ_CP045205.1_4469051_4469294_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|300aa|up_1|NZ_CP045205.1_4469294_4470194_+	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|621aa|up_0|NZ_CP045205.1_4470262_4472125_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|172aa|down_0|NZ_CP045205.1_4473345_4473861_-	PRK11068, PRK11068, phosphatidylglycerophosphatase A; Provisional	NA|326aa|down_1|NZ_CP045205.1_4473838_4474816_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|140aa|down_2|NZ_CP045205.1_4474893_4475313_-	PRK00202, nusB, transcription antitermination factor NusB	NA|157aa|down_3|NZ_CP045205.1_4475332_4475803_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|368aa|down_4|NZ_CP045205.1_4475891_4476995_-	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|150aa|down_5|NZ_CP045205.1_4476998_4477448_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|180aa|down_6|NZ_CP045205.1_4477600_4478140_+	PRK11530, PRK11530, hypothetical protein; Provisional	NA|295aa|down_7|NZ_CP045205.1_4478438_4479323_+	PRK15106, PRK15106, nucleoside-specific channel-forming protein Tsx; Provisional	WYL|231aa|down_8|NZ_CP045205.1_4479367_4480060_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|122aa|down_9|NZ_CP045205.1_4480075_4480441_-	COG3324, COG3324, Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
GCF_009363175.1_ASM936317v1	NZ_CP045205	Citrobacter sp. NMI7904_11 chromosome, complete genome	6	5273142-5273257	6	CRISPRCasFinder	no		cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	Orphan	TTCGTAGGCCTGATAAGCGAAGCGCCATCAGGCAACAGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,WYL,csa3,DinG,PD-DExK	NA,NA	NA|299aa|up_9|NZ_CP045205.1_5258672_5259569_-	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|234aa|up_8|NZ_CP045205.1_5259673_5260375_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|438aa|up_7|NZ_CP045205.1_5260656_5261970_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|444aa|up_6|NZ_CP045205.1_5261991_5263323_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|455aa|up_5|NZ_CP045205.1_5264046_5265411_-	PRK15040, PRK15040, L-serine ammonia-lyase	NA|765aa|up_4|NZ_CP045205.1_5265496_5267791_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|403aa|up_3|NZ_CP045205.1_5267824_5269033_-	PRK12379, PRK12379, propionate kinase	NA|444aa|up_2|NZ_CP045205.1_5269064_5270396_-	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|330aa|up_1|NZ_CP045205.1_5270430_5271420_-	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|313aa|up_0|NZ_CP045205.1_5271519_5272458_-	PRK10341, PRK10341, transcriptional regulator TdcA	NA|382aa|down_0|NZ_CP045205.1_5273719_5274865_-	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|297aa|down_1|NZ_CP045205.1_5274962_5275853_-	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|257aa|down_2|NZ_CP045205.1_5275882_5276653_-	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|445aa|down_3|NZ_CP045205.1_5276681_5278016_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|524aa|down_4|NZ_CP045205.1_5278398_5279970_+	TIGR03248, galactar-dH20, galactarate dehydratase	NA|317aa|down_5|NZ_CP045205.1_5280016_5280967_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|278aa|down_6|NZ_CP045205.1_5280977_5281811_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|285aa|down_7|NZ_CP045205.1_5282150_5283005_+	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|344aa|down_8|NZ_CP045205.1_5283692_5284724_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|476aa|down_9|NZ_CP045205.1_5285111_5286539_+	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]
