assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	1	1037918-1038312	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA|47aa|up_1|NZ_CP045277.1_1036627_1036768_-,NA	NA|434aa|up_9|NZ_CP045277.1_1027324_1028626_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP045277.1_1028673_1030908_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP045277.1_1030985_1031234_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP045277.1_1031233_1031569_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP045277.1_1031639_1032431_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP045277.1_1032658_1034296_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP045277.1_1034383_1035682_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP045277.1_1035741_1036614_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP045277.1_1036627_1036768_-	NA	NA|224aa|up_0|NZ_CP045277.1_1036906_1037578_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP045277.1_1038950_1040429_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP045277.1_1040455_1041733_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP045277.1_1042051_1042837_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|444aa|down_3|NZ_CP045277.1_1042906_1044238_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|34aa|down_4|NZ_CP045277.1_1044259_1044361_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|NZ_CP045277.1_1044454_1045792_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP045277.1_1045769_1046549_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP045277.1_1046545_1047406_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP045277.1_1047553_1048129_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP045277.1_1048145_1048406_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	2	1057884-1058156	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|287aa|up_9|NZ_CP045277.1_1046545_1047406_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP045277.1_1047553_1048129_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP045277.1_1048145_1048406_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP045277.1_1048396_1049668_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_5|NZ_CP045277.1_1049745_1050111_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP045277.1_1050426_1052226_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP045277.1_1052225_1053938_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP045277.1_1054011_1054746_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP045277.1_1055010_1055163_+	pfam01848, HOK_GEF, Hok/gef family	NA|403aa|up_0|NZ_CP045277.1_1055601_1056810_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP045277.1_1058238_1059276_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP045277.1_1059527_1060436_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP045277.1_1060437_1061865_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP045277.1_1061864_1062470_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP045277.1_1062519_1062843_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP045277.1_1063036_1063348_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP045277.1_1063366_1064077_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP045277.1_1064076_1064556_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP045277.1_1064552_1065602_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP045277.1_1065582_1066344_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	3	2214123-2214246	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|30aa|down_7|NZ_CP045277.1_2223142_2223232_+	NA|79aa|up_9|NZ_CP045277.1_2203029_2203266_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP045277.1_2203576_2204989_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP045277.1_2205545_2205755_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP045277.1_2206209_2206836_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP045277.1_2206856_2208959_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_4|NZ_CP045277.1_2208962_2209610_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NZ_CP045277.1_2209673_2210342_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NZ_CP045277.1_2210338_2211124_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NZ_CP045277.1_2211127_2211940_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_0|NZ_CP045277.1_2211951_2213556_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|419aa|down_0|NZ_CP045277.1_2214560_2215817_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP045277.1_2215857_2217231_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP045277.1_2217445_2218087_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP045277.1_2218126_2219275_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP045277.1_2219565_2220777_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP045277.1_2220889_2221822_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP045277.1_2221818_2222844_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP045277.1_2223142_2223232_+	NA	NA|390aa|down_8|NZ_CP045277.1_2223397_2224567_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP045277.1_2224801_2225383_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	4	2959723-2959814	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA|60aa|up_7|NZ_CP045277.1_2953882_2954062_-,NA	NA|1321aa|up_9|NZ_CP045277.1_2949063_2953026_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_8|NZ_CP045277.1_2953065_2953704_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|60aa|up_7|NZ_CP045277.1_2953882_2954062_-	NA	NA|364aa|up_6|NZ_CP045277.1_2953991_2955083_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP045277.1_2955082_2955775_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP045277.1_2955786_2956173_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP045277.1_2956180_2956981_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP045277.1_2956990_2957581_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP045277.1_2957591_2958086_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP045277.1_2958106_2959435_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP045277.1_2960237_2960834_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP045277.1_2960854_2961082_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP045277.1_2961119_2962361_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP045277.1_2962653_2963910_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP045277.1_2964170_2965091_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP045277.1_2965090_2965396_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP045277.1_2965547_2966147_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP045277.1_2966143_2968690_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP045277.1_2968689_2969862_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP045277.1_2969991_2970684_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	5	3223898-3224042	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|330aa|up_9|NZ_CP045277.1_3211796_3212786_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP045277.1_3213182_3214091_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP045277.1_3214282_3216304_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP045277.1_3216882_3217560_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP045277.1_3217552_3218308_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP045277.1_3218294_3219449_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP045277.1_3219445_3220486_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP045277.1_3220572_3221862_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP045277.1_3221920_3222397_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP045277.1_3222548_3223832_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP045277.1_3224065_3226327_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP045277.1_3226509_3227943_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP045277.1_3228018_3229071_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP045277.1_3229254_3230208_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP045277.1_3230248_3231244_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP045277.1_3231398_3232217_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP045277.1_3232217_3233276_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP045277.1_3233278_3233968_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP045277.1_3233967_3234741_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP045277.1_3234907_3235057_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	6	3454428-3454524	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|231aa|up_9|NZ_CP045277.1_3446214_3446907_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP045277.1_3447126_3447669_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP045277.1_3448148_3449015_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP045277.1_3449016_3449229_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|156aa|up_5|NZ_CP045277.1_3449336_3449804_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP045277.1_3449893_3451279_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP045277.1_3451452_3451947_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP045277.1_3451949_3452672_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP045277.1_3452789_3453299_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP045277.1_3453295_3454363_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP045277.1_3454557_3455451_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP045277.1_3455447_3456263_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP045277.1_3456273_3457533_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP045277.1_3457542_3459210_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP045277.1_3459526_3460576_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP045277.1_3460597_3461833_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP045277.1_3461843_3462629_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP045277.1_3462856_3464002_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP045277.1_3464023_3465325_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP045277.1_3465381_3466743_-	PRK08044, PRK08044, allantoinase AllB
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	7	3594670-3594814	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|28aa|down_2|NZ_CP045277.1_3596859_3596943_-	NA|357aa|up_9|NZ_CP045277.1_3579808_3580879_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP045277.1_3580971_3581553_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP045277.1_3581557_3583375_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP045277.1_3583530_3584904_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP045277.1_3584979_3586299_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP045277.1_3586705_3588001_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP045277.1_3588058_3588748_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP045277.1_3588937_3590140_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP045277.1_3590136_3593283_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP045277.1_3593408_3594593_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP045277.1_3594837_3595746_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP045277.1_3595870_3596782_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP045277.1_3596859_3596943_-	NA	NA|95aa|down_3|NZ_CP045277.1_3597428_3597713_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP045277.1_3597784_3598462_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP045277.1_3598719_3598911_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP045277.1_3598960_3599485_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP045277.1_3599667_3600126_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP045277.1_3600245_3601055_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP045277.1_3601071_3602187_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	8	3653170-3653309	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	CACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|82aa|down_4|NZ_CP045277.1_3657259_3657505_-,NA|272aa|down_5|NZ_CP045277.1_3657917_3658733_-	NA|204aa|up_9|NZ_CP045277.1_3641234_3641846_+	PRK09527, lacA, galactoside O-acetyltransferase; Reviewed	NA|394aa|up_8|NZ_CP045277.1_3641948_3643130_-	PRK09705, cynX, putative cyanate transporter; Provisional	NA|157aa|up_7|NZ_CP045277.1_3643135_3643606_-	COG1513, CynS, Cyanate lyase [Inorganic ion transport and metabolism]	NA|220aa|up_6|NZ_CP045277.1_3643636_3644296_-	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|300aa|up_5|NZ_CP045277.1_3644404_3645304_+	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional	NA|428aa|up_4|NZ_CP045277.1_3645640_3646924_-	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|420aa|up_3|NZ_CP045277.1_3646913_3648173_-	PRK11017, codB, cytosine permease; Provisional	NA|629aa|up_2|NZ_CP045277.1_3648502_3650389_-	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|484aa|up_1|NZ_CP045277.1_3650428_3651880_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|390aa|up_0|NZ_CP045277.1_3651913_3653083_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|down_0|NZ_CP045277.1_3653336_3654227_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|down_1|NZ_CP045277.1_3654465_3656052_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|down_2|NZ_CP045277.1_3656149_3656425_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|224aa|down_3|NZ_CP045277.1_3656571_3657243_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|82aa|down_4|NZ_CP045277.1_3657259_3657505_-	NA	NA|272aa|down_5|NZ_CP045277.1_3657917_3658733_-	NA	NA|350aa|down_6|NZ_CP045277.1_3658975_3660025_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|461aa|down_7|NZ_CP045277.1_3660401_3661784_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|down_8|NZ_CP045277.1_3661793_3662744_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|473aa|down_9|NZ_CP045277.1_3662979_3664398_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	9	3992745-3992880	3	PILER-CR	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|126aa|up_9|NZ_CP045277.1_3983453_3983831_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP045277.1_3983837_3984680_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP045277.1_3984757_3985237_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP045277.1_3985428_3987291_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP045277.1_3987283_3987814_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP045277.1_3987921_3989253_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP045277.1_3989309_3989597_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP045277.1_3989593_3990880_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP045277.1_3990930_3991872_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP045277.1_3991886_3992657_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP045277.1_3993129_3994644_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP045277.1_3994674_3995817_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP045277.1_3995945_3997163_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP045277.1_3997236_3998790_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP045277.1_3998898_3999684_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP045277.1_3999689_4000280_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP045277.1_4000488_4000884_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP045277.1_4001145_4004367_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP045277.1_4004384_4005533_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP045277.1_4005988_4006810_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_009363035.1_ASM936303v1	NZ_CP045277	Escherichia coli strain LAU-OXA chromosome, complete genome	10	4000318-4000459	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|96aa|up_9|NZ_CP045277.1_3989309_3989597_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP045277.1_3989593_3990880_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP045277.1_3990930_3991872_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP045277.1_3991886_3992657_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP045277.1_3993129_3994644_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP045277.1_3994674_3995817_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP045277.1_3995945_3997163_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP045277.1_3997236_3998790_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP045277.1_3998898_3999684_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP045277.1_3999689_4000280_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP045277.1_4000488_4000884_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP045277.1_4001145_4004367_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP045277.1_4004384_4005533_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP045277.1_4005988_4006810_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP045277.1_4006976_4007891_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP045277.1_4007956_4008907_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP045277.1_4008908_4009358_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP045277.1_4009482_4009977_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP045277.1_4009976_4012793_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP045277.1_4012835_4013777_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_009363035.1_ASM936303v1	NZ_CP045278	Escherichia coli strain LAU-OXA plasmid pLAU-OXA1, complete sequence	1	1373-1627	1	PILER-CR	no		DEDDh	Orphan	GTATGCTGTCAGCGGT	16	0	0	NA	NA	NA	3	3	Orphan	cas3,csa3,PD-DExK,DEDDh,c2c9_V-U4,DinG,RT	NA|365aa|up_0|NZ_CP045278.1_0_1095_+,NA|71aa|down_0|NZ_CP045278.1_1674_1887_-,NA|112aa|down_1|NZ_CP045278.1_1886_2222_-,NA|60aa|down_2|NZ_CP045278.1_2218_2398_-,NA|92aa|down_3|NZ_CP045278.1_2437_2713_-,NA|67aa|down_6|NZ_CP045278.1_4119_4320_-,NA|89aa|down_8|NZ_CP045278.1_5488_5755_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|365aa|up_0|NZ_CP045278.1_0_1095_+	NA	NA|71aa|down_0|NZ_CP045278.1_1674_1887_-	NA	NA|112aa|down_1|NZ_CP045278.1_1886_2222_-	NA	NA|60aa|down_2|NZ_CP045278.1_2218_2398_-	NA	NA|92aa|down_3|NZ_CP045278.1_2437_2713_-	NA	NA|139aa|down_4|NZ_CP045278.1_2768_3185_-	PHA02053, PHA02053, hypothetical protein	NA|277aa|down_5|NZ_CP045278.1_3285_4116_-	pfam01145, Band_7, SPFH domain / Band 7 family	NA|67aa|down_6|NZ_CP045278.1_4119_4320_-	NA	NA|358aa|down_7|NZ_CP045278.1_4412_5486_-	COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair]	NA|89aa|down_8|NZ_CP045278.1_5488_5755_-	NA	NA|315aa|down_9|NZ_CP045278.1_5754_6699_-	smart00475, 53EXOc, 5'-3' exonuclease
