The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	954315	963267	4100340		Catovirus(50.0%)	8	NA	NA
WP_009906099.1|954315_955155_+	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	25.9	1.8e-05
WP_022615338.1|955169_956345_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_003422862.1|956373_957123_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_003422864.1|957144_958053_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003422866.1|958100_958853_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	3.5e-16
WP_170324422.1|958830_960174_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.4	1.1e-89
WP_003422869.1|960179_961271_+	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.0e-16
WP_009906096.1|961353_963267_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
>prophage 2
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	1126777	1144299	4100340	integrase	Streptococcus_phage(100.0%)	19	1125692:1125708	1148011:1148027
1125692:1125708	attL	ATCAGGAGAAGATAGAA	NA	NA	NA	NA
WP_000420682.1|1126777_1127092_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1127107_1127494_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1127522_1128908_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|1128910_1129063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|1129085_1130291_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|1130333_1130555_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1130671_1131169_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1131143_1131650_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000804748.1|1134082_1136260_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|1136256_1137258_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224319.1|1137254_1138187_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	100.0	1.1e-171
WP_001791010.1|1138431_1138548_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691727.1|1138563_1140483_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	100.0	0.0e+00
WP_000336323.1|1140601_1140769_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|1140828_1141182_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|1141686_1142109_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1142105_1142336_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1142796_1143000_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1143081_1144299_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
1148011:1148027	attR	ATCAGGAGAAGATAGAA	NA	NA	NA	NA
>prophage 3
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	1938110	1959461	4100340	integrase	Streptococcus_phage(94.74%)	22	1926685:1926699	1959686:1959700
1926685:1926699	attL	AATTATATTAAAGTA	NA	NA	NA	NA
WP_000420682.1|1938110_1938425_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1938440_1938827_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1938855_1940241_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|1940243_1940396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|1940418_1941624_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|1941666_1941888_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000506270.1|1942475_1942982_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|1942965_1945413_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000804748.1|1945415_1947593_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|1947589_1948591_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224319.1|1948587_1949520_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	100.0	1.1e-171
WP_001791010.1|1949764_1949881_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691727.1|1949896_1951816_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	100.0	0.0e+00
WP_000336323.1|1951934_1952102_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|1952161_1952515_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|1953019_1953442_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1953438_1953669_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1954129_1954333_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1954414_1955632_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_009905633.1|1955906_1956464_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003424097.1|1956704_1957565_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	32.8	1.3e-35
WP_003424094.1|1958063_1959461_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.2	2.0e-20
1959686:1959700	attR	AATTATATTAAAGTA	NA	NA	NA	NA
>prophage 4
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	2559326	2569055	4100340		Pandoravirus(37.5%)	11	NA	NA
WP_003419891.1|2559326_2560493_-	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.6e-37
WP_009905444.1|2560510_2562301_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
WP_003419887.1|2562555_2563341_-	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
WP_003419886.1|2563321_2563828_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	33.9	4.2e-13
WP_022615216.1|2563820_2564186_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003419883.1|2564196_2564988_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.0	1.1e-23
WP_003419881.1|2565053_2565626_-	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	2.3e-44
WP_003419879.1|2565651_2566353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003419877.1|2566386_2567130_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_003419875.1|2567119_2568469_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.6	7.7e-38
WP_003419873.1|2568470_2569055_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.2	2.5e-57
>prophage 5
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	2597782	2671888	4100340	tail,integrase,portal,plate	Clostridium_phage(46.43%)	67	2592489:2592507	2644184:2644202
2592489:2592507	attL	TAATTACTTTAACTCAAAA	NA	NA	NA	NA
WP_003419836.1|2597782_2598127_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A090EUH1	Clostridium_phage	69.1	2.6e-30
WP_003419835.1|2598317_2599673_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_003419834.1|2599790_2600459_-	diphthine--ammonia ligase	NA	NA	NA	NA	NA
WP_003419833.1|2600525_2600954_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003419829.1|2601065_2601659_+	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_009905437.1|2601778_2602714_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	62.3	9.1e-46
WP_003419824.1|2603015_2603960_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003419821.1|2604277_2605720_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_003419819.1|2605919_2606504_+	zinc dependent phospholipase C family protein	NA	NA	NA	NA	NA
WP_003419804.1|2606597_2607377_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003419802.1|2607434_2608691_-	competence/damage-inducible protein A	NA	B5TK85	Pseudomonas_phage	34.0	5.5e-14
WP_003419800.1|2608948_2609848_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_003419798.1|2609871_2611320_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003419795.1|2611378_2612185_+	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_003419773.1|2616263_2616611_-	PqqD family protein	NA	NA	NA	NA	NA
WP_009905432.1|2616597_2618529_-	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_003419766.1|2618939_2621129_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	32.1	4.4e-59
WP_003419763.1|2621462_2622194_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	33.8	1.0e-23
WP_003419760.1|2622273_2622909_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003419758.1|2623160_2623754_-	DUF3867 domain-containing protein	NA	NA	NA	NA	NA
WP_003419753.1|2623824_2624688_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_003419751.1|2624850_2626020_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003419749.1|2626120_2626597_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_022615211.1|2627162_2627957_+	M55 family metallopeptidase	NA	NA	NA	NA	NA
WP_003424678.1|2627980_2628424_+	membrane protein	NA	NA	NA	NA	NA
WP_003419735.1|2628512_2629799_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_003419730.1|2630016_2630907_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003419725.1|2631198_2631543_+	RidA family protein	NA	NA	NA	NA	NA
WP_003419722.1|2631703_2633800_-	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_003419720.1|2633812_2634973_-	DUF819 family protein	NA	NA	NA	NA	NA
WP_003419717.1|2634991_2636059_-	dipeptide epimerase	NA	Q6A202	Oenococcus_phage	27.9	3.1e-18
WP_003419715.1|2636409_2636976_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003419711.1|2637193_2638180_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_009905429.1|2638209_2638905_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003419704.1|2638924_2640145_-	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_003419698.1|2640173_2640965_-	LamB/YcsF family protein	NA	NA	NA	NA	NA
WP_003419696.1|2641551_2642181_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009905427.1|2642291_2643806_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003419690.1|2644049_2644592_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
2644184:2644202	attR	TAATTACTTTAACTCAAAA	NA	NA	NA	NA
WP_003419688.1|2644593_2647098_+	MFS transporter	NA	NA	NA	NA	NA
WP_003419686.1|2647515_2647914_+	helix-turn-helix domain-containing protein	NA	A0A059T669	Listeria_phage	34.5	1.0e-06
WP_009905424.1|2648130_2648340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003419680.1|2648371_2648581_-	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003419677.1|2648876_2649296_+	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	35.9	1.6e-05
WP_003419674.1|2649523_2649979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003419670.1|2650189_2650450_-	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419667.1|2650712_2651066_-	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	5.5e-12
WP_003419666.1|2651082_2656260_-	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	27.2	2.6e-81
WP_003419664.1|2656281_2657268_-|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	7.6e-59
WP_003419661.1|2657268_2657967_-	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	9.5e-48
WP_003419658.1|2657963_2659016_-|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	70.4	3.5e-139
WP_003419656.1|2659008_2659437_-	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	81.0	3.7e-63
WP_003419655.1|2659436_2659763_-	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	92.6	3.9e-52
WP_003419653.1|2659778_2661308_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.3e-243
WP_003419651.1|2661589_2662012_-	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
WP_003419649.1|2662011_2664465_-	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	58.4	1.4e-16
WP_003419647.1|2664658_2665105_-|portal	phage portal protein	portal	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
WP_003419646.1|2665218_2665647_-|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_003419645.1|2665660_2666725_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1V0DZX4	Clostridioides_phage	53.1	5.8e-97
WP_003419644.1|2666729_2667173_-	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	2.0e-19
WP_003419643.1|2667421_2667862_-	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	47.9	1.1e-28
WP_003419641.1|2667965_2668163_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003419639.1|2668331_2668652_+	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	55.5	9.7e-24
WP_003419636.1|2668733_2669240_+	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.7	1.1e-56
WP_009889131.1|2669940_2670696_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009889129.1|2670838_2671267_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|2671687_2671888_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
>prophage 6
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	3385345	3455158	4100340	tRNA,protease,transposase,coat	Streptococcus_phage(25.0%)	59	NA	NA
WP_003418123.1|3385345_3386443_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_003418119.1|3386815_3386986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003418116.1|3387157_3387601_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003418111.1|3388314_3389205_-	radical SAM protein	NA	NA	NA	NA	NA
WP_003418110.1|3389584_3390382_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003418109.1|3390764_3391286_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003418107.1|3391816_3392494_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003418106.1|3393067_3393649_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003418105.1|3393641_3393872_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003418102.1|3394929_3395205_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_003418100.1|3395280_3396582_-	AAA family ATPase	NA	A0A218KST2	Xenohaliotis_phage	29.3	6.3e-21
WP_009904996.1|3397050_3398289_-	conserved phage C-terminal domain-containing protein	NA	A0A1V0E018	Clostridioides_phage	40.6	3.8e-15
WP_003418096.1|3398736_3398994_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_003418094.1|3399572_3399794_+	DUF1659 domain-containing protein	NA	NA	NA	NA	NA
WP_003418092.1|3400118_3400358_+	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
WP_003418089.1|3400362_3400512_+	YvrJ family protein	NA	NA	NA	NA	NA
WP_003418088.1|3400768_3401206_+	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003418087.1|3401459_3402353_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003418086.1|3402518_3403343_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_170324423.1|3403438_3404047_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003418084.1|3404150_3404327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003418082.1|3404620_3405895_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	23.9	1.4e-12
WP_003418080.1|3406231_3406801_-	GrpB family protein	NA	NA	NA	NA	NA
WP_003418078.1|3407171_3407777_+	urea carboxylase-associated family protein	NA	NA	NA	NA	NA
WP_003418075.1|3408465_3410040_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_009904989.1|3410200_3410737_-	GrpB family protein	NA	NA	NA	NA	NA
WP_003418071.1|3410810_3411224_-	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_003418069.1|3411687_3412473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003418066.1|3413026_3413560_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	49.4	5.9e-34
WP_003418064.1|3413721_3414375_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003418062.1|3415166_3415739_-	manganese catalase family protein	NA	NA	NA	NA	NA
WP_003418056.1|3415802_3416066_-|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003418053.1|3416065_3416287_-|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_003418051.1|3416784_3417321_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	69.7	2.1e-63
WP_003418050.1|3417338_3418652_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.5	3.3e-94
WP_003418048.1|3418986_3419427_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009904984.1|3419596_3419785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003418041.1|3420682_3425893_-	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
WP_003418039.1|3425907_3428424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003418037.1|3428843_3429131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003418035.1|3429150_3429426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003418032.1|3430552_3431734_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	26.0	6.6e-09
WP_029158113.1|3432083_3432965_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003418025.1|3433012_3435097_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	26.6	2.9e-07
WP_009904978.1|3435356_3437924_-	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.2	3.5e-47
WP_003418018.1|3437926_3438532_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003418016.1|3438900_3440361_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003418014.1|3440661_3441240_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003418012.1|3441290_3441524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003421731.1|3441532_3442783_+	MFS transporter	NA	NA	NA	NA	NA
WP_009902004.1|3442943_3443513_+	hydrolase	NA	NA	NA	NA	NA
WP_003418006.1|3443854_3445195_-	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	39.7	1.4e-79
WP_003418003.1|3445554_3445752_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003418000.1|3446099_3447191_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_009904969.1|3447915_3449835_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.8e-144
WP_003417996.1|3450627_3451230_-	DUF445 family protein	NA	NA	NA	NA	NA
WP_003417993.1|3451408_3452227_-	putative sporulation protein YtxC	NA	NA	NA	NA	NA
WP_003417991.1|3452229_3452991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041160395.1|3454039_3455158_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	52.7	1.4e-109
>prophage 7
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	3535655	3570590	4100340	integrase	Streptococcus_phage(81.48%)	39	3528781:3528796	3565605:3565620
3528781:3528796	attL	CTAACTTTCTACTAAA	NA	NA	NA	NA
WP_003417815.1|3535655_3536846_-|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.0	3.1e-155
WP_002347229.1|3536924_3537128_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	1.9e-25
WP_009896525.1|3537503_3537743_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_009896527.1|3537735_3538164_-	hypothetical protein	NA	A0A1S5SEW0	Streptococcus_phage	43.1	1.9e-22
WP_003417802.1|3538444_3538669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417799.1|3538795_3540529_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.7	7.1e-44
WP_003417796.1|3540578_3542129_+	recombinase family protein	NA	A0A2K5B2B2	Erysipelothrix_phage	55.4	8.6e-158
WP_000510187.1|3542129_3542543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417792.1|3542546_3544118_+	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	61.1	1.1e-173
WP_000228166.1|3544472_3545342_+	nucleotidyltransferase domain-containing protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000662263.1|3545322_3546057_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_001255864.1|3546089_3546998_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	93.4	2.0e-167
WP_000627290.1|3546994_3547537_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001096887.1|3547629_3548424_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001079938.1|3548699_3549272_+	HTH domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
WP_072387101.1|3549244_3549652_+	WYL domain-containing protein	NA	A0A1B0RXM3	Streptococcus_phage	98.3	1.1e-59
WP_000802831.1|3549762_3550422_+	RibD family protein	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
WP_000582200.1|3551083_3551335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001277639.1|3551453_3551825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085751.1|3553255_3555073_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	4.8e-35
WP_003417631.1|3555196_3556156_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000473997.1|3556268_3557180_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.1	4.1e-83
WP_000768246.1|3557196_3558204_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	68.8	3.1e-132
WP_003417629.1|3558200_3560411_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	59.9	1.6e-186
WP_003417628.1|3560410_3562861_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
WP_003061368.1|3562838_3563237_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	4.1e-48
WP_003417623.1|3563346_3563850_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
WP_003417621.1|3563867_3564371_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_010774377.1|3564289_3564586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417620.1|3564686_3565160_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002323342.1|3565236_3565458_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_003417615.1|3565458_3565593_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_003417612.1|3565604_3566801_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.8	4.3e-149
3565605:3565620	attR	CTAACTTTCTACTAAA	NA	NA	NA	NA
WP_003417609.1|3567045_3567462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417607.1|3567465_3568848_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.7	2.0e-174
WP_009274548.1|3568948_3569275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417606.1|3569290_3569698_-	helix-turn-helix domain-containing protein	NA	A0A0A7AQV8	Bacillus_phage	42.3	2.6e-05
WP_003417604.1|3569864_3570248_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	2.3e-32
WP_003417601.1|3570263_3570590_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
>prophage 8
NZ_CP045224	Clostridioides difficile strain TW11 chromosome, complete genome	4100340	3802273	3808977	4100340		Synechococcus_phage(42.86%)	7	NA	NA
WP_003420974.1|3802273_3803806_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_003420972.1|3803798_3804392_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.9	3.6e-24
WP_003420970.1|3804385_3805462_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	42.8	2.9e-64
WP_003420968.1|3805455_3806823_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	1.2e-49
WP_003420966.1|3806834_3807533_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003420964.1|3807538_3808015_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	3.1e-26
WP_003420963.1|3808464_3808977_+	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.6	1.7e-83
